FFCP PHASE1:Hg19::chr20:24911239..24911260,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr20:24911239..24911260,+
|short_description=p@chr20:24911239..24911260,+
|description=CAGE_peak_at_chr20:24911239..24911260,+
|association_with_transcript=NA
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr20:24911239..24911260,+ | |||
|coexpression_cluster_id=C4020 | |||
|description=CAGE_peak_at_chr20:24911239..24911260,+ | |||
|id=chr20:24911239..24911260,+ | |||
|ontology_enrichment_celltype=CL:0002076!9.78e-10!43;CL:0000223!6.27e-09!59 | |||
|ontology_enrichment_celltype_v019=CL:0002251;1.33e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002251,1.61e-07,20 | |||
|ontology_enrichment_development_v019=UBERON:0006595;1.62e-09;86!UBERON:0007297;7.62e-09;2 | |||
|ontology_enrichment_disease=DOID:1749!2.06e-16!14;DOID:305!1.86e-14!106;DOID:299!2.50e-11!25;DOID:0050687!4.56e-10!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.46e-15;14!DOID:299;3.15e-12;25!DOID:3493;3.62e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.45e-15,14;DOID:305,1.35e-14,106;DOID:299,3.78e-12,25;DOID:0050687,2.60e-11,143;DOID:3493,3.70e-08,2;DOID:162,6.88e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.03e-17!169;UBERON:0000925!1.03e-17!169;UBERON:0006595!1.03e-17!169;UBERON:0001007!7.22e-17!155;UBERON:0001555!7.22e-17!155;UBERON:0007026!7.22e-17!155;UBERON:0004921!1.04e-13!129;UBERON:0004185!1.04e-13!129;UBERON:0000077!4.55e-13!130;UBERON:0000974!1.96e-10!10;UBERON:0005911!2.46e-10!82;UBERON:0000344!4.78e-10!12;UBERON:0001004!9.81e-09!72;UBERON:0000161!1.31e-08!35;UBERON:0005156!1.30e-07!59;UBERON:0000990!1.30e-07!59;UBERON:0000466!1.34e-07!126;UBERON:0007023!1.36e-07!115;UBERON:0001041!1.68e-07!98;UBERON:0003729!1.80e-07!5;UBERON:0002294!3.21e-07!7;UBERON:0001173!3.21e-07!7;UBERON:0004912!3.21e-07!7;UBERON:0000464!3.70e-07!104;UBERON:0005153!6.68e-07!37;UBERON:0003343!8.85e-07!4;UBERON:0004785!8.85e-07!4;UBERON:0003929!9.47e-07!54;UBERON:0004175!1.00e-06!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0000974;1.34e-14;6!UBERON:0006947;2.18e-12;3!UBERON:0004054;2.18e-12;3!UBERON:0000058;2.12e-09;10!UBERON:0005904;2.20e-09;4!UBERON:0003343;8.59e-09;4!UBERON:0004785;8.59e-09;4!UBERON:0001041;1.93e-08;14!UBERON:0001829;4.82e-08;2!UBERON:0000341;1.06e-07;2!UBERON:0004921;6.37e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,8.70e-13,145;UBERON:0001555,8.70e-13,145;UBERON:0007026,8.70e-13,145;UBERON:0006947,2.00e-12,3;UBERON:0004054,2.00e-12,3;UBERON:0000974,4.43e-12,10;UBERON:0004119,5.92e-11,160;UBERON:0000925,5.92e-11,160;UBERON:0006595,5.92e-11,160;UBERON:0005904,2.06e-09,4;UBERON:0003343,8.63e-09,4;UBERON:0004785,8.63e-09,4;UBERON:0004921,1.70e-08,118;UBERON:0001829,5.29e-08,2;UBERON:0000341,6.53e-08,2;UBERON:0001041,1.90e-07,87;UBERON:0001004,2.72e-07,74;UBERON:0005911,3.72e-07,82 | |||
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| ||
|short_description=p@chr20:24911239..24911260,+ | |||
}} | }} |
Latest revision as of 12:38, 28 July 2015
Short description: | p@chr20:24911239..24911260, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:24911239..24911260, + |
Coexpression cluster: | C4020_thyroid_parotid_squamous_ductus_salivary_Neutrophils_seminal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of alimentary canal | 1.61e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
digestive system | 8.70e-13 | 145 |
digestive tract | 8.70e-13 | 145 |
primitive gut | 8.70e-13 | 145 |
male genital duct | 2.00e-12 | 3 |
internal male genitalia | 2.00e-12 | 3 |
neck | 4.43e-12 | 10 |
endoderm-derived structure | 5.92e-11 | 160 |
endoderm | 5.92e-11 | 160 |
presumptive endoderm | 5.92e-11 | 160 |
duct of male reproductive system | 2.06e-09 | 4 |
mucosa of oral region | 8.63e-09 | 4 |
respiratory system mucosa | 8.63e-09 | 4 |
subdivision of digestive tract | 1.70e-08 | 118 |
major salivary gland | 5.29e-08 | 2 |
throat | 6.53e-08 | 2 |
foregut | 1.90e-07 | 87 |
respiratory system | 2.72e-07 | 74 |
endo-epithelium | 3.72e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.45e-15 | 14 |
carcinoma | 1.35e-14 | 106 |
adenocarcinoma | 3.78e-12 | 25 |
cell type cancer | 2.60e-11 | 143 |
signet ring cell adenocarcinoma | 3.70e-08 | 2 |
cancer | 6.88e-07 | 235 |