FFCP PHASE1:Hg19::chr1:54791102..54791151,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23648 | |EntrezGene=23648 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15674 | |HGNC=15674 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000426150_5end | |association_with_transcript=0bp_to_ENST00000426150_5end | ||
|cluster_id=chr1:54791102..54791151,- | |||
|coexpression_cluster_id=C535 | |coexpression_cluster_id=C535 | ||
|description=CAGE_peak_6_at_SSBP3_5end | |description=CAGE_peak_6_at_SSBP3_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002504!3.15e-11!3;CL:1000279!3.15e-11!3;CL:1000280!3.15e-11!3;CL:0002622!1.75e-10!3;CL:1000487!4.88e-08!2 | |ontology_enrichment_celltype=CL:0002504!3.15e-11!3;CL:1000279!3.15e-11!3;CL:1000280!3.15e-11!3;CL:0002622!1.75e-10!3;CL:1000487!4.88e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:0002581;5.71e-21;1!CL:0002599;5.71e-21;1!CL:0002097;2.23e-11;2!CL:1000487;3.52e-11;2!CL:0000174;5.18e-08;3!CL:0002504;7.02e-08;3!CL:1000279;7.02e-08;3!CL:1000280;7.02e-08;3 | |ontology_enrichment_celltype_v019=CL:0002581;5.71e-21;1!CL:0002599;5.71e-21;1!CL:0002097;2.23e-11;2!CL:1000487;3.52e-11;2!CL:0000174;5.18e-08;3!CL:0002504;7.02e-08;3!CL:1000279;7.02e-08;3!CL:1000280;7.02e-08;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002581,5.16e-21,1;CL:0002599,6.31e-21,1;CL:0002097,2.23e-11,2;CL:1000487,3.02e-11,2;CL:0000174,5.18e-08,3;CL:0002504,7.76e-08,3;CL:1000279,7.76e-08,3;CL:1000280,7.76e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0006238;2.82e-08;10!UBERON:0003056;5.54e-08;3 | |ontology_enrichment_development_v019=UBERON:0006238;2.82e-08;10!UBERON:0003056;5.54e-08;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3307;3.52e-11;2!DOID:3093;1.16e-07;11 | |ontology_enrichment_disease_v019=DOID:3307;3.52e-11;2!DOID:3093;1.16e-07;11 | ||
|ontology_enrichment_disease_v019_2=DOID:3307,2.73e-11,2;DOID:3093,1.16e-07,11 | |||
|ontology_enrichment_uberon=UBERON:0002367!1.38e-13!11;UBERON:0010147!1.38e-13!11;UBERON:0009846!1.38e-13!11;UBERON:0003353!1.38e-13!11;UBERON:0004902!1.38e-13!11;UBERON:0003820!1.38e-13!11;UBERON:0009847!1.38e-13!11;UBERON:0000162!1.98e-13!14;UBERON:0001353!1.98e-13!14;UBERON:0000163!1.98e-13!14;UBERON:0006866!1.98e-13!14;UBERON:0000164!1.98e-13!14;UBERON:0000931!1.98e-13!14;UBERON:0003101!1.05e-12!22;UBERON:0000079!1.05e-12!22;UBERON:0004122!1.93e-12!15;UBERON:0003937!2.30e-12!12;UBERON:0005399!2.30e-12!12;UBERON:0001046!1.57e-09!19 | |ontology_enrichment_uberon=UBERON:0002367!1.38e-13!11;UBERON:0010147!1.38e-13!11;UBERON:0009846!1.38e-13!11;UBERON:0003353!1.38e-13!11;UBERON:0004902!1.38e-13!11;UBERON:0003820!1.38e-13!11;UBERON:0009847!1.38e-13!11;UBERON:0000162!1.98e-13!14;UBERON:0001353!1.98e-13!14;UBERON:0000163!1.98e-13!14;UBERON:0006866!1.98e-13!14;UBERON:0000164!1.98e-13!14;UBERON:0000931!1.98e-13!14;UBERON:0003101!1.05e-12!22;UBERON:0000079!1.05e-12!22;UBERON:0004122!1.93e-12!15;UBERON:0003937!2.30e-12!12;UBERON:0005399!2.30e-12!12;UBERON:0001046!1.57e-09!19 | ||
|ontology_enrichment_uberon_v019=UBERON:0005406;3.52e-11;2!UBERON:0002369;5.18e-08;3!UBERON:0001235;5.18e-08;3!UBERON:0006858;5.18e-08;3!UBERON:0001043;7.02e-08;3 | |ontology_enrichment_uberon_v019=UBERON:0005406;3.52e-11;2!UBERON:0002369;5.18e-08;3!UBERON:0001235;5.18e-08;3!UBERON:0006858;5.18e-08;3!UBERON:0001043;7.02e-08;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005406,3.35e-11,2;UBERON:0002369,5.18e-08,3;UBERON:0001235,5.18e-08,3;UBERON:0006858,5.18e-08,3;UBERON:0001043,7.26e-08,3;UBERON:0009143,7.26e-08,3 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0.142977993658148,0,0.823240336780769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0.511707249066704,0,1.48418066444991,0.154209693802656,0,0,0,0,0.120859449591622,0,0,0.229628896329213,0.182091168006717,0.393373244878272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0.214840489736547,0.145016693914229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.899362287916574,1.37268514868027,0.706874414074119,0,0,0,1.46290121726877,0,0,0.545999645631943,1.69686518344455,0,0,0,0,0.578775534266688,0,0,0,0,0,0.196498082026242,0,0,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.844501632511974,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0.0874599999961957,0,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,0,0,0.46112780877612,1.16684937732704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0.123563938946503,0,0,0,0,0,0,0,0.394584402849391,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,6.77908311187531,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.28883182749851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0.703484977438482,0,0.535701835878287,0,0,0,0.177404740325278,0,0,0,0.0657727735628491,0,0,0.078493092850514,0,0,0,0,0,0,3.95034029331817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.82684738750774,0,0,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253397002022874,0,0,0,0,0.0757786982182394,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,1.9307228228694,0,0,0,0,0,0,0 | |phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0.142977993658148,0,0.823240336780769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0.511707249066704,0,1.48418066444991,0.154209693802656,0,0,0,0,0.120859449591622,0,0,0.229628896329213,0.182091168006717,0.393373244878272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0.214840489736547,0.145016693914229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.899362287916574,1.37268514868027,0.706874414074119,0,0,0,1.46290121726877,0,0,0.545999645631943,1.69686518344455,0,0,0,0,0.578775534266688,0,0,0,0,0,0.196498082026242,0,0,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.844501632511974,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0.0874599999961957,0,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,0,0,0.46112780877612,1.16684937732704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0.123563938946503,0,0,0,0,0,0,0,0.394584402849391,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,6.77908311187531,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.28883182749851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0.703484977438482,0,0.535701835878287,0,0,0,0.177404740325278,0,0,0,0.0657727735628491,0,0,0.078493092850514,0,0,0,0,0,0,3.95034029331817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.82684738750774,0,0,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253397002022874,0,0,0,0,0.0757786982182394,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,1.9307228228694,0,0,0,0,0,0,0 | ||
|short_description=p6@SSBP3 | |short_description=p6@SSBP3 | ||
}} | }} |
Latest revision as of 14:43, 18 September 2015
Short description: | p6@SSBP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SSBP3_5end |
Coexpression cluster: | C535_medulloblastoma_small_pineal_retinoblastoma_eye_Retinal_retina |
Association with transcript: | 0bp_to_ENST00000426150_5end |
EntrezGene: | SSBP3 |
HGNC: | 15674 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
perirenal preadipocyte | 5.16e-21 | 1 |
smooth muscle cell of the esophagus | 6.31e-21 | 1 |
cortical cell of adrenal gland | 2.23e-11 | 2 |
smooth muscle cell of prostate | 3.02e-11 | 2 |
steroid hormone secreting cell | 5.18e-08 | 3 |
enteric smooth muscle cell | 7.76e-08 | 3 |
smooth muscle cell of large intestine | 7.76e-08 | 3 |
smooth muscle cell of colon | 7.76e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
perirenal fat | 3.35e-11 | 2 |
adrenal gland | 5.18e-08 | 3 |
adrenal cortex | 5.18e-08 | 3 |
adrenal/interrenal gland | 5.18e-08 | 3 |
esophagus | 7.26e-08 | 3 |
esophageal region | 7.26e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
teratoma | 2.73e-11 | 2 |
nervous system cancer | 1.16e-07 | 11 |