FFCP PHASE1:Hg19::chr22:31487162..31487174,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6525 | |EntrezGene=6525 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11126 | |HGNC=11126 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=215bp_to_uc011alg.1_5end | |association_with_transcript=215bp_to_uc011alg.1_5end | ||
|cluster_id=chr22:31487162..31487174,+ | |||
|coexpression_cluster_id=C48 | |coexpression_cluster_id=C48 | ||
|description=CAGE_peak_18_at_SMTN_5end | |description=CAGE_peak_18_at_SMTN_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0009143;2.32e-12;1!UBERON:0001045;2.32e-12;1!UBERON:0005754;2.32e-12;1!UBERON:0007297;8.28e-07;2 | |ontology_enrichment_development_v019=UBERON:0009143;2.32e-12;1!UBERON:0001045;2.32e-12;1!UBERON:0005754;2.32e-12;1!UBERON:0007297;8.28e-07;2 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.47e-11!115;UBERON:0006947!7.72e-09!3;UBERON:0004054!7.72e-09!3;UBERON:0000059!2.73e-08!11;UBERON:0001155!3.07e-07!9 | |ontology_enrichment_uberon=UBERON:0007023!8.47e-11!115;UBERON:0006947!7.72e-09!3;UBERON:0004054!7.72e-09!3;UBERON:0000059!2.73e-08!11;UBERON:0001155!3.07e-07!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0000059;2.16e-16;11!UBERON:0006947;1.22e-15;3!UBERON:0004054;1.22e-15;3!UBERON:0000160;2.58e-15;17!UBERON:0006834;2.32e-12;1!UBERON:0001154;2.32e-12;1!UBERON:0001000;2.32e-12;1!UBERON:0000998;2.32e-12;1!UBERON:0000996;2.32e-12;1!UBERON:0001153;2.32e-12;1!UBERON:0006868;2.32e-12;1!UBERON:0009854;2.32e-12;1!UBERON:0005352;2.32e-12;1!UBERON:0005409;5.65e-12;22!UBERON:0005904;5.70e-12;4!UBERON:0001155;9.95e-12;9!UBERON:0004921;1.00e-10;33!UBERON:0004907;9.27e-10;5!UBERON:0004175;1.26e-08;21!UBERON:0001255;4.82e-07;2!UBERON:0001556;4.82e-07;2 | |ontology_enrichment_uberon_v019=UBERON:0000059;2.16e-16;11!UBERON:0006947;1.22e-15;3!UBERON:0004054;1.22e-15;3!UBERON:0000160;2.58e-15;17!UBERON:0006834;2.32e-12;1!UBERON:0001154;2.32e-12;1!UBERON:0001000;2.32e-12;1!UBERON:0000998;2.32e-12;1!UBERON:0000996;2.32e-12;1!UBERON:0001153;2.32e-12;1!UBERON:0006868;2.32e-12;1!UBERON:0009854;2.32e-12;1!UBERON:0005352;2.32e-12;1!UBERON:0005409;5.65e-12;22!UBERON:0005904;5.70e-12;4!UBERON:0001155;9.95e-12;9!UBERON:0004921;1.00e-10;33!UBERON:0004907;9.27e-10;5!UBERON:0004175;1.26e-08;21!UBERON:0001255;4.82e-07;2!UBERON:0001556;4.82e-07;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000059,1.84e-16,11;UBERON:0006947,1.42e-15,3;UBERON:0004054,1.42e-15,3;UBERON:0000160,2.79e-15,17;UBERON:0001046,1.26e-14,19;UBERON:0006834,1.25e-12,1;UBERON:0000996,1.96e-12,1;UBERON:0000998,2.20e-12,1;UBERON:0006868,2.20e-12,1;UBERON:0001000,3.08e-12,1;UBERON:0005352,3.08e-12,1;UBERON:0001154,3.85e-12,1;UBERON:0001153,3.85e-12,1;UBERON:0001045,3.85e-12,1;UBERON:0005904,6.37e-12,4;UBERON:0001155,9.79e-12,9;UBERON:0005409,1.47e-10,25;UBERON:0007023,2.44e-10,114;UBERON:0004907,9.70e-10,5;UBERON:0000162,7.85e-08,14;UBERON:0001353,7.85e-08,14;UBERON:0000163,7.85e-08,14;UBERON:0006866,7.85e-08,14;UBERON:0000164,7.85e-08,14;UBERON:0000931,7.85e-08,14;UBERON:0004122,2.43e-07,15;UBERON:0004175,2.61e-07,25;UBERON:0001255,4.83e-07,2;UBERON:0001556,4.83e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.144846518960824,0,0,0,0,0,0.261958150995425,0.728590576585084,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,0,0,0,0,1.06748995729705,0,0,0,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0.169560592310488,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439001141634502,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289562613335158,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0.256278298511402,0,0,0,0.154209693802656,0,0,0,0,0,0.40101294060657,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0.307007349452259,0,0,0,0.0852266274161009,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0.19924798825107,1.10513566212459,0,0,0,0,0,0,0,4.14302303675121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.923403102045565,0,0,0.0897576444097721,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98578579323551,0.884575645033392,1.83309043480088,0,0,0,0,0,0,0,0,0,1.18375320854817,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,1.84279131327997,0,0.225980740780532,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201550417460179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19730191562487,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0.181848659202559,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300841313397029,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43328587836593,0,0,1.82631744101899,0,0,1.50100742770978,0,0,0,0.801711364730253,0,0,0,0,0.118332000730565,0.0852134047591577,1.27016115057279,0,0,0,0,0,0,0,0.102662806856247,1.1598144313382,0,0,0,0.118920090777569,0,0,0,0.617393264863557,0,0,9.56078454840231,0,0,0,0.4226557275834,0,0.0939839179798536,0,0,0,0,0,0,0,0,0,0,0,1.0580536810308,0,0,0.432626562123789,0,0,0,0,0,0,0,0.227336094654718,0,0,0,0.426467963801962,0.23806443146374,0,0,0,0.0636471582781649,0,0,0,0,0.286888821570705,0,0,0,0,0,0,1.833621662743,0,1.33151354837103,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.144846518960824,0,0,0,0,0,0.261958150995425,0.728590576585084,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,0,0,0,0,1.06748995729705,0,0,0,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0.169560592310488,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439001141634502,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289562613335158,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0.256278298511402,0,0,0,0.154209693802656,0,0,0,0,0,0.40101294060657,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0.307007349452259,0,0,0,0.0852266274161009,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0.19924798825107,1.10513566212459,0,0,0,0,0,0,0,4.14302303675121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.923403102045565,0,0,0.0897576444097721,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98578579323551,0.884575645033392,1.83309043480088,0,0,0,0,0,0,0,0,0,1.18375320854817,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,1.84279131327997,0,0.225980740780532,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201550417460179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19730191562487,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0.181848659202559,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300841313397029,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43328587836593,0,0,1.82631744101899,0,0,1.50100742770978,0,0,0,0.801711364730253,0,0,0,0,0.118332000730565,0.0852134047591577,1.27016115057279,0,0,0,0,0,0,0,0.102662806856247,1.1598144313382,0,0,0,0.118920090777569,0,0,0,0.617393264863557,0,0,9.56078454840231,0,0,0,0.4226557275834,0,0.0939839179798536,0,0,0,0,0,0,0,0,0,0,0,1.0580536810308,0,0,0.432626562123789,0,0,0,0,0,0,0,0.227336094654718,0,0,0,0.426467963801962,0.23806443146374,0,0,0,0.0636471582781649,0,0,0,0,0.286888821570705,0,0,0,0,0,0,1.833621662743,0,1.33151354837103,0,0 | ||
|short_description=p18@SMTN | |short_description=p18@SMTN | ||
}} | }} |
Latest revision as of 19:18, 19 September 2015
Short description: | p18@SMTN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_18_at_SMTN_5end |
Coexpression cluster: | C48_smooth_bladder_esophagus_colon_penis_aorta_uterus |
Association with transcript: | 215bp_to_uc011alg.1_5end |
EntrezGene: | SMTN |
HGNC: | 11126 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
large intestine | 1.84e-16 | 11 |
male genital duct | 1.42e-15 | 3 |
internal male genitalia | 1.42e-15 | 3 |
intestine | 2.79e-15 | 17 |
hindgut | 1.26e-14 | 19 |
uterus or analog | 1.25e-12 | 1 |
vagina | 1.96e-12 | 1 |
seminal vesicle | 2.20e-12 | 1 |
seminal fluid secreting gland | 2.20e-12 | 1 |
vas deferens | 3.08e-12 | 1 |
spermatic cord | 3.08e-12 | 1 |
vermiform appendix | 3.85e-12 | 1 |
caecum | 3.85e-12 | 1 |
midgut | 3.85e-12 | 1 |
duct of male reproductive system | 6.37e-12 | 4 |
colon | 9.79e-12 | 9 |
gastrointestinal system | 1.47e-10 | 25 |
adult organism | 2.44e-10 | 114 |
lower digestive tract | 9.70e-10 | 5 |
cloaca | 7.85e-08 | 14 |
anal region | 7.85e-08 | 14 |
embryonic cloaca | 7.85e-08 | 14 |
terminal part of digestive tract | 7.85e-08 | 14 |
primitive urogenital sinus | 7.85e-08 | 14 |
proctodeum | 7.85e-08 | 14 |
genitourinary system | 2.43e-07 | 15 |
internal genitalia | 2.61e-07 | 25 |
urinary bladder | 4.83e-07 | 2 |
lower urinary tract | 4.83e-07 | 2 |