FFCP PHASE1:Hg19::chr3:181429741..181429767,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6657 | |EntrezGene=6657 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11195 | |HGNC=11195 | ||
|TSSclassifier=strong | |||
|UniProt=P48431 | |UniProt=P48431 | ||
|association_with_transcript=19bp_to_ENST00000325404,uc003fkx.2_5end | |association_with_transcript=19bp_to_ENST00000325404,uc003fkx.2_5end | ||
|cluster_id=chr3:181429741..181429767,+ | |||
|coexpression_cluster_id=C1056 | |coexpression_cluster_id=C1056 | ||
|description=CAGE_peak_2_at_SOX2_5end | |description=CAGE_peak_2_at_SOX2_5end | ||
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|ontology_enrichment_celltype=CL:0002319!1.65e-13!25;CL:0000133!4.96e-10!59;CL:0000221!3.09e-09!71;CL:0000047!1.17e-08!8;CL:0002076!2.67e-07!43;CL:0000095!2.98e-07!17;CL:0000123!2.98e-07!17;CL:0000128!3.02e-07!7;CL:0000126!3.02e-07!7;CL:0000127!3.02e-07!7;CL:0002453!3.02e-07!7 | |ontology_enrichment_celltype=CL:0002319!1.65e-13!25;CL:0000133!4.96e-10!59;CL:0000221!3.09e-09!71;CL:0000047!1.17e-08!8;CL:0002076!2.67e-07!43;CL:0000095!2.98e-07!17;CL:0000123!2.98e-07!17;CL:0000128!3.02e-07!7;CL:0000126!3.02e-07!7;CL:0000127!3.02e-07!7;CL:0002453!3.02e-07!7 | ||
|ontology_enrichment_celltype_v019=CL:0002319;6.06e-18;25!CL:0000095;1.18e-09;17!CL:0000128;5.43e-09;7!CL:0000126;5.43e-09;7!CL:0000127;5.43e-09;7!CL:0000540;4.05e-08;6!CL:0000404;4.05e-08;6!CL:0002322;7.74e-08;5!CL:0000243;9.05e-08;15!CL:0000125;9.05e-08;15 | |ontology_enrichment_celltype_v019=CL:0002319;6.06e-18;25!CL:0000095;1.18e-09;17!CL:0000128;5.43e-09;7!CL:0000126;5.43e-09;7!CL:0000127;5.43e-09;7!CL:0000540;4.05e-08;6!CL:0000404;4.05e-08;6!CL:0002322;7.74e-08;5!CL:0000243;9.05e-08;15!CL:0000125;9.05e-08;15 | ||
|ontology_enrichment_celltype_v019_2=CL:0002319,6.33e-18,25;CL:0000133,5.38e-12,59;CL:0000047,8.23e-11,8;CL:0000221,2.74e-10,72;CL:0000095,1.20e-09,17;CL:0000123,1.20e-09,17;CL:0000128,5.64e-09,7;CL:0000126,5.64e-09,7;CL:0000127,5.64e-09,7;CL:0002453,5.64e-09,7;CL:0000540,4.15e-08,6;CL:0000031,4.15e-08,6;CL:0000404,4.15e-08,6;CL:0002322,7.91e-08,5;CL:0000243,9.06e-08,15;CL:0000125,9.06e-08,15;CL:0000030,9.06e-08,15;CL:0000339,9.06e-08,15;CL:0000333,3.75e-07,41 | |||
|ontology_enrichment_development_v019=UBERON:0006601;4.81e-15;82!CL:0000031;4.05e-08;6!CL:0000339;9.05e-08;15!CL:0000133;9.83e-07;59 | |ontology_enrichment_development_v019=UBERON:0006601;4.81e-15;82!CL:0000031;4.05e-08;6!CL:0000339;9.05e-08;15!CL:0000133;9.83e-07;59 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.36e-54!82;UBERON:0000073!1.60e-52!94;UBERON:0001016!1.60e-52!94;UBERON:0005743!2.38e-51!86;UBERON:0001049!8.45e-46!57;UBERON:0005068!8.45e-46!57;UBERON:0006241!8.45e-46!57;UBERON:0007135!8.45e-46!57;UBERON:0000955!7.41e-42!69;UBERON:0006238!7.41e-42!69;UBERON:0000924!9.42e-42!173;UBERON:0006601!9.42e-42!173;UBERON:0002616!2.75e-41!59;UBERON:0004121!3.17e-40!169;UBERON:0002346!6.45e-39!90;UBERON:0003075!1.49e-37!86;UBERON:0007284!1.49e-37!86;UBERON:0007023!3.77e-35!115;UBERON:0002780!3.38e-34!41;UBERON:0001890!3.38e-34!41;UBERON:0006240!3.38e-34!41;UBERON:0000153!2.14e-33!129;UBERON:0007811!2.14e-33!129;UBERON:0003080!5.66e-33!42;UBERON:0000033!8.69e-33!123;UBERON:0001893!3.21e-29!34;UBERON:0002020!3.92e-29!34;UBERON:0003528!3.92e-29!34;UBERON:0002791!2.10e-28!33;UBERON:0001869!1.58e-27!32;UBERON:0003056!1.03e-26!61;UBERON:0000956!1.94e-21!25;UBERON:0000203!1.94e-21!25;UBERON:0002619!1.76e-18!22;UBERON:0001950!1.11e-16!20;UBERON:0000064!9.83e-15!219;UBERON:0003076!1.28e-13!15;UBERON:0003057!1.28e-13!15;UBERON:0000922!2.82e-13!612;UBERON:0000468!6.49e-12!659;UBERON:0000475!8.31e-12!365;UBERON:0004732!4.62e-11!13;UBERON:0004733!1.35e-10!12;UBERON:0002028!1.35e-10!12;UBERON:0007277!1.35e-10!12;UBERON:0002050!2.87e-10!605;UBERON:0005423!2.87e-10!605;UBERON:0000923!5.01e-10!604;UBERON:0005291!5.01e-10!604;UBERON:0006598!5.01e-10!604;UBERON:0002532!5.01e-10!604;UBERON:0004111!5.40e-10!241;UBERON:0002420!2.85e-09!9;UBERON:0007245!2.85e-09!9;UBERON:0010009!2.85e-09!9;UBERON:0010011!2.85e-09!9;UBERON:0000454!2.85e-09!9;UBERON:0000062!3.21e-09!511;UBERON:0002308!4.16e-09!9;UBERON:0000125!4.16e-09!9;UBERON:0000025!5.39e-09!194;UBERON:0000477!7.46e-09!286;UBERON:0000480!9.36e-09!626;UBERON:0000481!1.02e-08!347;UBERON:0000467!1.57e-08!625;UBERON:0002680!5.40e-08!9;UBERON:0001895!5.40e-08!9;UBERON:0010092!5.40e-08!9;UBERON:0000483!5.87e-08!309;UBERON:0000119!1.28e-07!312;UBERON:0009663!1.72e-07!7 | |ontology_enrichment_uberon=UBERON:0001017!8.36e-54!82;UBERON:0000073!1.60e-52!94;UBERON:0001016!1.60e-52!94;UBERON:0005743!2.38e-51!86;UBERON:0001049!8.45e-46!57;UBERON:0005068!8.45e-46!57;UBERON:0006241!8.45e-46!57;UBERON:0007135!8.45e-46!57;UBERON:0000955!7.41e-42!69;UBERON:0006238!7.41e-42!69;UBERON:0000924!9.42e-42!173;UBERON:0006601!9.42e-42!173;UBERON:0002616!2.75e-41!59;UBERON:0004121!3.17e-40!169;UBERON:0002346!6.45e-39!90;UBERON:0003075!1.49e-37!86;UBERON:0007284!1.49e-37!86;UBERON:0007023!3.77e-35!115;UBERON:0002780!3.38e-34!41;UBERON:0001890!3.38e-34!41;UBERON:0006240!3.38e-34!41;UBERON:0000153!2.14e-33!129;UBERON:0007811!2.14e-33!129;UBERON:0003080!5.66e-33!42;UBERON:0000033!8.69e-33!123;UBERON:0001893!3.21e-29!34;UBERON:0002020!3.92e-29!34;UBERON:0003528!3.92e-29!34;UBERON:0002791!2.10e-28!33;UBERON:0001869!1.58e-27!32;UBERON:0003056!1.03e-26!61;UBERON:0000956!1.94e-21!25;UBERON:0000203!1.94e-21!25;UBERON:0002619!1.76e-18!22;UBERON:0001950!1.11e-16!20;UBERON:0000064!9.83e-15!219;UBERON:0003076!1.28e-13!15;UBERON:0003057!1.28e-13!15;UBERON:0000922!2.82e-13!612;UBERON:0000468!6.49e-12!659;UBERON:0000475!8.31e-12!365;UBERON:0004732!4.62e-11!13;UBERON:0004733!1.35e-10!12;UBERON:0002028!1.35e-10!12;UBERON:0007277!1.35e-10!12;UBERON:0002050!2.87e-10!605;UBERON:0005423!2.87e-10!605;UBERON:0000923!5.01e-10!604;UBERON:0005291!5.01e-10!604;UBERON:0006598!5.01e-10!604;UBERON:0002532!5.01e-10!604;UBERON:0004111!5.40e-10!241;UBERON:0002420!2.85e-09!9;UBERON:0007245!2.85e-09!9;UBERON:0010009!2.85e-09!9;UBERON:0010011!2.85e-09!9;UBERON:0000454!2.85e-09!9;UBERON:0000062!3.21e-09!511;UBERON:0002308!4.16e-09!9;UBERON:0000125!4.16e-09!9;UBERON:0000025!5.39e-09!194;UBERON:0000477!7.46e-09!286;UBERON:0000480!9.36e-09!626;UBERON:0000481!1.02e-08!347;UBERON:0000467!1.57e-08!625;UBERON:0002680!5.40e-08!9;UBERON:0001895!5.40e-08!9;UBERON:0010092!5.40e-08!9;UBERON:0000483!5.87e-08!309;UBERON:0000119!1.28e-07!312;UBERON:0009663!1.72e-07!7 | ||
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| ||
|short_description=p2@SOX2 | |short_description=p2@SOX2 | ||
}} | }} |
Latest revision as of 22:08, 16 September 2015
Short description: | p2@SOX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SOX2_5end |
Coexpression cluster: | C1056_small_Neural_Astrocyte_teratocarcinoma_H9_hippocampus_testicular |
Association with transcript: | 19bp_to_ENST00000325404, uc003fkx.2_5end |
EntrezGene: | SOX2 |
HGNC: | 11195 |
UniProt: | P48431 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 6.33e-18 | 25 |
neurectodermal cell | 5.38e-12 | 59 |
neuronal stem cell | 8.23e-11 | 8 |
ectodermal cell | 2.74e-10 | 72 |
neuron associated cell | 1.20e-09 | 17 |
neuron associated cell (sensu Vertebrata) | 1.20e-09 | 17 |
oligodendrocyte | 5.64e-09 | 7 |
macroglial cell | 5.64e-09 | 7 |
astrocyte | 5.64e-09 | 7 |
oligodendrocyte precursor cell | 5.64e-09 | 7 |
neuron | 4.15e-08 | 6 |
neuroblast | 4.15e-08 | 6 |
electrically signaling cell | 4.15e-08 | 6 |
embryonic stem cell | 7.91e-08 | 5 |
glial cell (sensu Vertebrata) | 9.06e-08 | 15 |
glial cell | 9.06e-08 | 15 |
glioblast | 9.06e-08 | 15 |
glioblast (sensu Vertebrata) | 9.06e-08 | 15 |
migratory neural crest cell | 3.75e-07 | 41 |