FFCP PHASE1:Hg19::chr17:42117687..42117722,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:42117687..42117722,- | |||
|coexpression_cluster_id=C50 | |coexpression_cluster_id=C50 | ||
|description=CAGE_peak_at_chr17:42117687..42117722,- | |description=CAGE_peak_at_chr17:42117687..42117722,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002251!8.25e-08!21;CL:0002541!8.61e-08!3;CL:0002621!2.30e-07!3 | |ontology_enrichment_celltype=CL:0002251!8.25e-08!21;CL:0002541!8.61e-08!3;CL:0002621!2.30e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002541;5.56e-29;3!CL:0002251;1.02e-15;20!CL:0002166;3.56e-13;3!CL:0002621;6.16e-13;3!CL:0000511;2.50e-10;1!CL:0002625;2.50e-10;1!CL:0002336;2.50e-10;1!CL:0002261;2.50e-10;1!CL:0002170;2.50e-10;1!CL:0000216;2.50e-10;1!CL:0000349;4.53e-08;19!CL:0002076;5.38e-07;42 | |ontology_enrichment_celltype_v019=CL:0002541;5.56e-29;3!CL:0002251;1.02e-15;20!CL:0002166;3.56e-13;3!CL:0002621;6.16e-13;3!CL:0000511;2.50e-10;1!CL:0002625;2.50e-10;1!CL:0002336;2.50e-10;1!CL:0002261;2.50e-10;1!CL:0002170;2.50e-10;1!CL:0000216;2.50e-10;1!CL:0000349;4.53e-08;19!CL:0002076;5.38e-07;42 | ||
|ontology_enrichment_celltype_v019_2=CL:0002541,5.59e-29,3;CL:0002251,9.69e-16,20;CL:0002166,3.16e-13,3;CL:0002621,4.56e-13,3;CL:0000511,1.57e-10,1;CL:0002625,1.57e-10,1;CL:0000216,1.57e-10,1;CL:0002336,2.50e-10,1;CL:0002261,2.50e-10,1;CL:0002170,2.50e-10,1;CL:0000349,5.16e-08,19;CL:0002076,2.87e-07,42 | |||
|ontology_enrichment_development_v019=UBERON:0003124;8.13e-11;1 | |ontology_enrichment_development_v019=UBERON:0003124;8.13e-11;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005904!3.10e-08!4;UBERON:0000476!8.61e-08!3;UBERON:0000920!8.61e-08!3;UBERON:0001949!2.30e-07!3;UBERON:0005631!8.34e-07!14;UBERON:0000158!8.34e-07!14 | |ontology_enrichment_uberon=UBERON:0005904!3.10e-08!4;UBERON:0000476!8.61e-08!3;UBERON:0000920!8.61e-08!3;UBERON:0001949!2.30e-07!3;UBERON:0005631!8.34e-07!14;UBERON:0000158!8.34e-07!14 | ||
|ontology_enrichment_uberon_v019=UBERON:0003124;5.56e-29;3!UBERON:0000920;5.56e-29;3!UBERON:0005631;3.48e-15;10!UBERON:0000158;3.48e-15;10!UBERON:0001949;6.16e-13;3!UBERON:0003929;3.96e-12;7!UBERON:0003729;2.83e-11;13!UBERON:0000344;4.14e-11;20!UBERON:0003350;1.11e-10;8!UBERON:0001136;2.50e-10;1!UBERON:0001343;2.50e-10;1!UBERON:0002171;2.50e-10;1!UBERON:0006518;2.50e-10;1!UBERON:0008949;2.50e-10;1!UBERON:0004910;2.50e-10;1!UBERON:0000101;2.50e-10;1!UBERON:0004813;2.50e-10;1!UBERON:0002167;2.50e-10;1!UBERON:0001708;4.15e-10;4!UBERON:0008895;4.15e-10;4!UBERON:0000478;1.25e-09;24!UBERON:0011159;2.93e-08;5!UBERON:0004923;2.75e-07;55 | |ontology_enrichment_uberon_v019=UBERON:0003124;5.56e-29;3!UBERON:0000920;5.56e-29;3!UBERON:0005631;3.48e-15;10!UBERON:0000158;3.48e-15;10!UBERON:0001949;6.16e-13;3!UBERON:0003929;3.96e-12;7!UBERON:0003729;2.83e-11;13!UBERON:0000344;4.14e-11;20!UBERON:0003350;1.11e-10;8!UBERON:0001136;2.50e-10;1!UBERON:0001343;2.50e-10;1!UBERON:0002171;2.50e-10;1!UBERON:0006518;2.50e-10;1!UBERON:0008949;2.50e-10;1!UBERON:0004910;2.50e-10;1!UBERON:0000101;2.50e-10;1!UBERON:0004813;2.50e-10;1!UBERON:0002167;2.50e-10;1!UBERON:0001708;4.15e-10;4!UBERON:0008895;4.15e-10;4!UBERON:0000478;1.25e-09;24!UBERON:0011159;2.93e-08;5!UBERON:0004923;2.75e-07;55 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,5.59e-29,3;UBERON:0003124,7.43e-22,7;UBERON:0005631,1.65e-16,14;UBERON:0000158,1.65e-16,14;UBERON:0001949,4.56e-13,3;UBERON:0004923,2.45e-12,66;UBERON:0003729,2.61e-11,13;UBERON:0000344,3.72e-11,20;UBERON:0003350,8.80e-11,8;UBERON:0001136,1.57e-10,1;UBERON:0001343,1.57e-10,1;UBERON:0004910,1.57e-10,1;UBERON:0005154,1.57e-10,1;UBERON:0005295,1.57e-10,1;UBERON:0004813,1.57e-10,1;UBERON:0005297,1.57e-10,1;UBERON:0005294,1.57e-10,1;UBERON:0010141,1.57e-10,1;UBERON:0005891,1.57e-10,1;UBERON:0002171,3.61e-10,1;UBERON:0006518,3.61e-10,1;UBERON:0008949,3.61e-10,1;UBERON:0000101,3.61e-10,1;UBERON:0002167,3.61e-10,1;UBERON:0001708,3.79e-10,4;UBERON:0008895,3.79e-10,4;UBERON:0000478,1.42e-09,24;UBERON:0011159,2.73e-08,5;UBERON:0010188,4.80e-07,6;UBERON:0002539,4.80e-07,6;UBERON:0008816,4.80e-07,6 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0.111410456885174,0,0,0,0.25618263945135,0.910415432919148,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.805658634218294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0.773043412653187,1.36373060295417,1.72082757233402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38882667737794,0,0,0,0,0.234817388471643,1.58803092537181,0.925971025153221,0,0,0,0,0,0,0,2.01578553838631,1.55952606966625,0.179117045405697,0.581267877027924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06375246633948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.623912584592421,0.713715955188647,0.315404830067869,0.702848489956279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0.153461973288062,0.280660094433074,0.256278298511402,0.511707249066704,0,0,0,0,0,0.519254429183621,0,0,0.40101294060657,0,0.34444334449382,0,0.262248829918848,0.451199612907412,0.0770153371044148,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,1.95777922130672,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.19342140668156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,1.12972560932135,0.86101074534246,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71623345421307,0,0.307160702099232,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278847488557207,0.153900517007594,0,0,0.807818799687949,0,4.14701507651495,13.28165104327,18.1231823846336,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0.104421949505455,0,0,0,0,0,0,0.394584402849391,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0.0979923974143777,0.174118413160805,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709251365692784,0,0,0,0,0,0,0,0.542999601753713,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,1.06787412567695,0,1.24271716604159,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57785949122191,0.214441591374926,0,0,0,0.244736704506468,0.358177682162975,0,0.219284049578707,0,0,0.506827321959218,0,0,0.303859956177382,0,0,0,0,0,0,0,0.59996218756479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.531227386766,0,0,0,0,0.252071696221718,0,0,0,0.0981477185010256,0,1.28400018965175,0.577628330751691,0,0,0,0.300841313397029,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27762427639595,0,0,0,0,9.57985597756499,0,0,0,0,0,0,0.156986185701028,0,0,0,0,1.43325506366115,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0.111855431797792,0.098150233615243,0,0,0.102662806856247,0,0,0,0,0,0.11294608203896,0,0,0,0.655678681511872,0,0,0,0,0,0,0,0,0,0.199882311849858,0.71421575442263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,0,0.193766729508018,0.434523000071005,0,2.3549448562921,0.202117188958219,0,0,0.0673520530145875,0.78894425931944,0,0,0,0,0,0,0,0,0.665756774185513,0.201273793591026,0 | |phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0.111410456885174,0,0,0,0.25618263945135,0.910415432919148,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.805658634218294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0.773043412653187,1.36373060295417,1.72082757233402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38882667737794,0,0,0,0,0.234817388471643,1.58803092537181,0.925971025153221,0,0,0,0,0,0,0,2.01578553838631,1.55952606966625,0.179117045405697,0.581267877027924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06375246633948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.623912584592421,0.713715955188647,0.315404830067869,0.702848489956279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0.153461973288062,0.280660094433074,0.256278298511402,0.511707249066704,0,0,0,0,0,0.519254429183621,0,0,0.40101294060657,0,0.34444334449382,0,0.262248829918848,0.451199612907412,0.0770153371044148,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,1.95777922130672,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.19342140668156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,1.12972560932135,0.86101074534246,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71623345421307,0,0.307160702099232,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278847488557207,0.153900517007594,0,0,0.807818799687949,0,4.14701507651495,13.28165104327,18.1231823846336,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0.104421949505455,0,0,0,0,0,0,0.394584402849391,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0.0979923974143777,0.174118413160805,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709251365692784,0,0,0,0,0,0,0,0.542999601753713,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,1.06787412567695,0,1.24271716604159,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57785949122191,0.214441591374926,0,0,0,0.244736704506468,0.358177682162975,0,0.219284049578707,0,0,0.506827321959218,0,0,0.303859956177382,0,0,0,0,0,0,0,0.59996218756479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.531227386766,0,0,0,0,0.252071696221718,0,0,0,0.0981477185010256,0,1.28400018965175,0.577628330751691,0,0,0,0.300841313397029,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27762427639595,0,0,0,0,9.57985597756499,0,0,0,0,0,0,0.156986185701028,0,0,0,0,1.43325506366115,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0.111855431797792,0.098150233615243,0,0,0.102662806856247,0,0,0,0,0,0.11294608203896,0,0,0,0.655678681511872,0,0,0,0,0,0,0,0,0,0.199882311849858,0.71421575442263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,0,0.193766729508018,0.434523000071005,0,2.3549448562921,0.202117188958219,0,0,0.0673520530145875,0.78894425931944,0,0,0,0,0,0,0,0,0.665756774185513,0.201273793591026,0 | ||
|short_description=p@chr17:42117687..42117722,- | |short_description=p@chr17:42117687..42117722,- | ||
}} | }} |
Latest revision as of 17:18, 25 July 2015
Short description: | p@chr17:42117687..42117722, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:42117687..42117722, - |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 5.59e-29 | 3 |
epithelial cell of alimentary canal | 9.69e-16 | 20 |
epithelial cell of Malassez | 3.16e-13 | 3 |
gingival epithelial cell | 4.56e-13 | 3 |
androgen binding protein secreting cell | 1.57e-10 | 1 |
seminiferous tubule epithelial cell | 1.57e-10 | 1 |
Sertoli cell | 1.57e-10 | 1 |
buccal mucosa cell | 2.50e-10 | 1 |
endothelial cell of viscerocranial mucosa | 2.50e-10 | 1 |
keratinized cell of the oral mucosa | 2.50e-10 | 1 |
extraembryonic cell | 5.16e-08 | 19 |
endo-epithelial cell | 2.87e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 5.59e-29 | 3 |
chorion | 7.43e-22 | 7 |
extraembryonic membrane | 1.65e-16 | 14 |
membranous layer | 1.65e-16 | 14 |
gingival epithelium | 4.56e-13 | 3 |
organ component layer | 2.45e-12 | 66 |
mouth mucosa | 2.61e-11 | 13 |
mucosa | 3.72e-11 | 20 |
epithelium of mucosa | 8.80e-11 | 8 |
mesothelium | 1.57e-10 | 1 |
seminiferous tubule of testis | 1.57e-10 | 1 |
epithelium of male gonad | 1.57e-10 | 1 |
epithelial cord | 1.57e-10 | 1 |
sex cord | 1.57e-10 | 1 |
seminiferous tubule epithelium | 1.57e-10 | 1 |
testis sex cord | 1.57e-10 | 1 |
genital ridge | 1.57e-10 | 1 |
primitive sex cord of indifferent gonad | 1.57e-10 | 1 |
coelomic epithelium | 1.57e-10 | 1 |
lower lobe of right lung | 3.61e-10 | 1 |
right lung lobe | 3.61e-10 | 1 |
lower lobe of lung | 3.61e-10 | 1 |
lobe of lung | 3.61e-10 | 1 |
right lung | 3.61e-10 | 1 |
jaw skeleton | 3.79e-10 | 4 |
splanchnocranium | 3.79e-10 | 4 |
extraembryonic structure | 1.42e-09 | 24 |
primary subdivision of cranial skeletal system | 2.73e-08 | 5 |
protuberance | 4.80e-07 | 6 |
pharyngeal arch | 4.80e-07 | 6 |
embryonic head | 4.80e-07 | 6 |