FFCP PHASE1:Hg19::chr4:89514516..89514528,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8916 | |EntrezGene=8916 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4876 | |HGNC=4876 | ||
|TSSclassifier=strong | |||
|UniProt=C9J8E7 | |UniProt=C9J8E7 | ||
|association_with_transcript=0bp_to_ENST00000452979_5end | |association_with_transcript=0bp_to_ENST00000452979_5end | ||
|cluster_id=chr4:89514516..89514528,+ | |||
|coexpression_cluster_id=C68 | |coexpression_cluster_id=C68 | ||
|description=CAGE_peak_7_at_HERC3_5end | |description=CAGE_peak_7_at_HERC3_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002076!1.31e-10!43;CL:0002327!2.13e-10!4;CL:0002621!4.37e-08!3;CL:0000223!1.41e-07!59 | |ontology_enrichment_celltype=CL:0002076!1.31e-10!43;CL:0002327!2.13e-10!4;CL:0002621!4.37e-08!3;CL:0000223!1.41e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0002327;3.86e-32;4!CL:0002541;5.36e-20;3!CL:0002166;6.50e-20;3!CL:0002336;2.06e-15;1!CL:0002261;2.06e-15;1!CL:0002170;2.06e-15;1!CL:0002537;1.26e-12;5!CL:0000349;1.94e-12;19 | |ontology_enrichment_celltype_v019=CL:0002327;3.86e-32;4!CL:0002541;5.36e-20;3!CL:0002166;6.50e-20;3!CL:0002336;2.06e-15;1!CL:0002261;2.06e-15;1!CL:0002170;2.06e-15;1!CL:0002537;1.26e-12;5!CL:0000349;1.94e-12;19 | ||
|ontology_enrichment_celltype_v019_2=CL:0002327,2.80e-32,4;CL:0002541,4.02e-20,3;CL:0002166,6.50e-20,3;CL:0002336,2.38e-15,1;CL:0002261,2.38e-15,1;CL:0002170,2.38e-15,1;CL:0002537,1.26e-12,5;CL:0000349,1.77e-12,19 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001911!2.13e-10!4;UBERON:0005333!2.13e-10!4;UBERON:0008425!2.13e-10!4;UBERON:0005311!2.13e-10!4;UBERON:0001949!4.37e-08!3 | |ontology_enrichment_uberon=UBERON:0001911!2.13e-10!4;UBERON:0005333!2.13e-10!4;UBERON:0008425!2.13e-10!4;UBERON:0005311!2.13e-10!4;UBERON:0001949!4.37e-08!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0001911;3.86e-32;4!UBERON:0005631;2.51e-23;10!UBERON:0000158;2.51e-23;10!UBERON:0003124;5.36e-20;3!UBERON:0000920;5.36e-20;3!UBERON:0001708;3.41e-15;4!UBERON:0008895;3.41e-15;4!UBERON:0011159;2.38e-12;5!UBERON:0000478;6.66e-10;24!UBERON:0000305;2.80e-09;7!UBERON:0001905;2.31e-08;2!UBERON:0002757;2.31e-08;2!UBERON:0010134;2.31e-08;2!UBERON:0005408;2.31e-08;2!UBERON:0001899;2.31e-08;2 | |ontology_enrichment_uberon_v019=UBERON:0001911;3.86e-32;4!UBERON:0005631;2.51e-23;10!UBERON:0000158;2.51e-23;10!UBERON:0003124;5.36e-20;3!UBERON:0000920;5.36e-20;3!UBERON:0001708;3.41e-15;4!UBERON:0008895;3.41e-15;4!UBERON:0011159;2.38e-12;5!UBERON:0000478;6.66e-10;24!UBERON:0000305;2.80e-09;7!UBERON:0001905;2.31e-08;2!UBERON:0002757;2.31e-08;2!UBERON:0010134;2.31e-08;2!UBERON:0005408;2.31e-08;2!UBERON:0001899;2.31e-08;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001911,2.80e-32,4;UBERON:0005333,2.80e-32,4;UBERON:0008425,2.80e-32,4;UBERON:0005311,2.80e-32,4;UBERON:0000920,4.02e-20,3;UBERON:0005631,8.01e-17,14;UBERON:0000158,8.01e-17,14;UBERON:0000076,1.65e-16,8;UBERON:0001708,3.42e-15,4;UBERON:0008895,3.42e-15,4;UBERON:0011159,2.38e-12,5;UBERON:0010188,1.90e-10,6;UBERON:0002539,1.90e-10,6;UBERON:0008816,1.90e-10,6;UBERON:0000478,6.21e-10,24;UBERON:0000305,2.80e-09,7;UBERON:0003124,3.58e-09,7;UBERON:0001905,2.87e-08,2;UBERON:0002757,2.87e-08,2;UBERON:0010134,2.87e-08,2;UBERON:0005408,2.87e-08,2;UBERON:0001899,2.87e-08,2;UBERON:0004871,3.15e-08,8 | |||
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| ||
|short_description=p7@HERC3 | |short_description=p7@HERC3 | ||
}} | }} |
Latest revision as of 07:51, 19 September 2015
Short description: | p7@HERC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_HERC3_5end |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | 0bp_to_ENST00000452979_5end |
EntrezGene: | HERC3 |
HGNC: | 4876 |
UniProt: | C9J8E7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mammary gland epithelial cell | 2.80e-32 | 4 |
chorionic membrane mesenchymal stem cell | 4.02e-20 | 3 |
epithelial cell of Malassez | 6.50e-20 | 3 |
buccal mucosa cell | 2.38e-15 | 1 |
endothelial cell of viscerocranial mucosa | 2.38e-15 | 1 |
keratinized cell of the oral mucosa | 2.38e-15 | 1 |
amnion mesenchymal stem cell | 1.26e-12 | 5 |
extraembryonic cell | 1.77e-12 | 19 |
Ontology term | p-value | n |
---|---|---|
mammary gland | 2.80e-32 | 4 |
mammary bud | 2.80e-32 | 4 |
mammary ridge | 2.80e-32 | 4 |
mammary placode | 2.80e-32 | 4 |
egg chorion | 4.02e-20 | 3 |
extraembryonic membrane | 8.01e-17 | 14 |
membranous layer | 8.01e-17 | 14 |
external ectoderm | 1.65e-16 | 8 |
jaw skeleton | 3.42e-15 | 4 |
splanchnocranium | 3.42e-15 | 4 |
primary subdivision of cranial skeletal system | 2.38e-12 | 5 |
protuberance | 1.90e-10 | 6 |
pharyngeal arch | 1.90e-10 | 6 |
embryonic head | 1.90e-10 | 6 |
extraembryonic structure | 6.21e-10 | 24 |
amnion | 2.80e-09 | 7 |
chorion | 3.58e-09 | 7 |
pineal body | 2.87e-08 | 2 |
regional part of epithalamus | 2.87e-08 | 2 |
secretory circumventricular organ | 2.87e-08 | 2 |
circumventricular organ | 2.87e-08 | 2 |
epithalamus | 2.87e-08 | 2 |
somatic layer of lateral plate mesoderm | 3.15e-08 | 8 |