FFCP PHASE1:Hg19::chr7:101917407..101917443,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1523 | |EntrezGene=1523 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2557 | |HGNC=2557 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-1bp_to_ENST00000487284,uc003uyz.2_5end | |association_with_transcript=-1bp_to_ENST00000487284,uc003uyz.2_5end | ||
|cluster_id=chr7:101917407..101917443,+ | |||
|coexpression_cluster_id=C619 | |coexpression_cluster_id=C619 | ||
|description=CAGE_peak_3_at_CUX1_5end | |description=CAGE_peak_3_at_CUX1_5end | ||
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|ontology_enrichment_celltype=CL:0000066!6.61e-24!254;CL:0000548!3.84e-11!679;CL:0000004!3.84e-11!679;CL:0000255!3.84e-11!679;CL:0000012!7.78e-11!682;CL:0000223!3.08e-09!59;CL:0000077!2.35e-07!19;CL:0000003!4.58e-07!722;CL:0002076!6.15e-07!43;CL:0000082!9.29e-07!19 | |ontology_enrichment_celltype=CL:0000066!6.61e-24!254;CL:0000548!3.84e-11!679;CL:0000004!3.84e-11!679;CL:0000255!3.84e-11!679;CL:0000012!7.78e-11!682;CL:0000223!3.08e-09!59;CL:0000077!2.35e-07!19;CL:0000003!4.58e-07!722;CL:0002076!6.15e-07!43;CL:0000082!9.29e-07!19 | ||
|ontology_enrichment_celltype_v019=CL:0000077;1.23e-11;19!CL:0002586;5.91e-07;3 | |ontology_enrichment_celltype_v019=CL:0000077;1.23e-11;19!CL:0002586;5.91e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.26e-29,253;CL:0000076,3.84e-12,63;CL:0000077,7.50e-12,19;CL:0002586,4.47e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.36e-18;29!UBERON:0001041;2.65e-09;30 | |ontology_enrichment_development_v019=UBERON:0008947;1.36e-18;29!UBERON:0001041;2.65e-09;30 | ||
|ontology_enrichment_disease=DOID:305!3.74e-30!106;DOID:0050687!1.42e-26!143;DOID:14566!2.46e-22!239;DOID:162!2.95e-21!235;DOID:1749!2.87e-11!14;DOID:7!1.72e-10!39;DOID:0050615!2.75e-07!16;DOID:1324!6.07e-07!15 | |ontology_enrichment_disease=DOID:305!3.74e-30!106;DOID:0050687!1.42e-26!143;DOID:14566!2.46e-22!239;DOID:162!2.95e-21!235;DOID:1749!2.87e-11!14;DOID:7!1.72e-10!39;DOID:0050615!2.75e-07!16;DOID:1324!6.07e-07!15 | ||
|ontology_enrichment_disease_v019=DOID:1749;4.06e-17;14!DOID:305;6.02e-10;106!DOID:1324;3.41e-08;15!DOID:0050687;7.03e-08;143!DOID:0050615;1.38e-07;16!DOID:7;4.38e-07;39 | |ontology_enrichment_disease_v019=DOID:1749;4.06e-17;14!DOID:305;6.02e-10;106!DOID:1324;3.41e-08;15!DOID:0050687;7.03e-08;143!DOID:0050615;1.38e-07;16!DOID:7;4.38e-07;39 | ||
|ontology_enrichment_disease_v019_2=DOID:305,1.09e-41,106;DOID:0050687,7.92e-36,143;DOID:14566,2.94e-25,239;DOID:162,4.31e-25,235;DOID:1749,5.99e-17,14;DOID:1324,2.54e-08,15;DOID:0050615,1.06e-07,16;DOID:7,2.52e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0001007!1.59e-19!155;UBERON:0001555!1.59e-19!155;UBERON:0007026!1.59e-19!155;UBERON:0004119!3.91e-19!169;UBERON:0000925!3.91e-19!169;UBERON:0006595!3.91e-19!169;UBERON:0004921!5.27e-14!129;UBERON:0004185!5.27e-14!129;UBERON:0000077!3.74e-13!130;UBERON:0000072!6.89e-12!46;UBERON:0005911!8.04e-12!82;UBERON:0008947!1.30e-11!38;UBERON:0003258!1.30e-11!38;UBERON:0003104!2.06e-11!238;UBERON:0009142!2.06e-11!238;UBERON:0001737!5.40e-11!9;UBERON:0000065!2.16e-10!53;UBERON:0001004!5.83e-10!72;UBERON:0000481!1.33e-08!347;UBERON:0002100!1.49e-08!216;UBERON:0005153!2.19e-08!37;UBERON:0003929!3.96e-08!54;UBERON:0001041!6.56e-08!98;UBERON:0000466!6.90e-08!126;UBERON:0000344!7.27e-08!12;UBERON:0005177!7.82e-08!107;UBERON:0000062!4.49e-07!511;UBERON:0006554!5.42e-07!44;UBERON:0000464!5.97e-07!104;UBERON:0004802!9.29e-07!19;UBERON:0000115!9.29e-07!19 | |ontology_enrichment_uberon=UBERON:0001007!1.59e-19!155;UBERON:0001555!1.59e-19!155;UBERON:0007026!1.59e-19!155;UBERON:0004119!3.91e-19!169;UBERON:0000925!3.91e-19!169;UBERON:0006595!3.91e-19!169;UBERON:0004921!5.27e-14!129;UBERON:0004185!5.27e-14!129;UBERON:0000077!3.74e-13!130;UBERON:0000072!6.89e-12!46;UBERON:0005911!8.04e-12!82;UBERON:0008947!1.30e-11!38;UBERON:0003258!1.30e-11!38;UBERON:0003104!2.06e-11!238;UBERON:0009142!2.06e-11!238;UBERON:0001737!5.40e-11!9;UBERON:0000065!2.16e-10!53;UBERON:0001004!5.83e-10!72;UBERON:0000481!1.33e-08!347;UBERON:0002100!1.49e-08!216;UBERON:0005153!2.19e-08!37;UBERON:0003929!3.96e-08!54;UBERON:0001041!6.56e-08!98;UBERON:0000466!6.90e-08!126;UBERON:0000344!7.27e-08!12;UBERON:0005177!7.82e-08!107;UBERON:0000062!4.49e-07!511;UBERON:0006554!5.42e-07!44;UBERON:0000464!5.97e-07!104;UBERON:0004802!9.29e-07!19;UBERON:0000115!9.29e-07!19 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;3.54e-20;9!UBERON:0001557;3.54e-20;9!UBERON:0000072;7.76e-15;37!UBERON:0000065;1.92e-10;44!UBERON:0001004;1.18e-08;65!UBERON:0005911;2.80e-08;36!UBERON:0001781;5.91e-07;3!UBERON:0001782;5.91e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0001737;3.54e-20;9!UBERON:0001557;3.54e-20;9!UBERON:0000072;7.76e-15;37!UBERON:0000065;1.92e-10;44!UBERON:0001004;1.18e-08;65!UBERON:0005911;2.80e-08;36!UBERON:0001781;5.91e-07;3!UBERON:0001782;5.91e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,3.07e-20,9;UBERON:0001007,6.34e-17,145;UBERON:0001555,6.34e-17,145;UBERON:0007026,6.34e-17,145;UBERON:0004921,2.45e-15,118;UBERON:0000072,2.93e-15,47;UBERON:0004119,3.55e-15,160;UBERON:0000925,3.55e-15,160;UBERON:0006595,3.55e-15,160;UBERON:0008947,1.03e-14,38;UBERON:0003258,1.03e-14,38;UBERON:0005911,3.59e-13,82;UBERON:0000065,1.62e-12,54;UBERON:0001557,2.99e-12,19;UBERON:0001041,6.24e-11,87;UBERON:0001004,1.67e-10,74;UBERON:0003929,1.18e-09,54;UBERON:0005153,5.71e-08,37;UBERON:0005177,1.78e-07,101;UBERON:0001782,4.47e-07,3;UBERON:0005424,4.47e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0.123766352960047,0.331397375727916,0.672325146451775,0,0,0,0,0.204000691244253,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0.30120591877825,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0.0654895377488563,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0.132409180813219,0,0.354668382198357,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0,1.10550885580591,0.103325781175765,0,0,0.910161361938026,3.59309070908119,0.168336113954066,0,0.277064115484183,0.438977620880838,0.612975591598039,0,0,0.358779271377724,0.427114777637135,0,0,0.206105058476878,1.03056216018252,0.744467425326359,0.337552664482532,0.292311015483596,0,0,0.161646056818812,0,0,0.169560592310488,1.15956511897978,0.272746120590835,0,0,0,0,0.207322110030741,0,0,0,0,1.38134921352481,0,0,6.86179440231095,6.40621822296786,5.06123162755312,5.95587452754927,4.79334777003293,2.37270619111097,6.20224017536756,3.92442930250692,5.38646019724947,0,0,0,0,0,0,0,0,1.96781501668982,0.686271241194102,0,2.24803506515239,0,0.277765335475589,0,0,0,0,0.234817388471643,0,0,0,1.58040879591855,3.43394464837949,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0.258543431515556,0,0,1.32969058292435,4.16029747645464,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.579125226670317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0.260650843404249,0.195801157462741,0,0,0,0,0.606255142892519,0,0,0,0,0,0,0,0,0,0,0,0.328508624055237,1.55776328755086,0.348631135379878,1.32945394550784,0.802025881213139,0.184161977871793,0.114814448164607,2.91345868810747,3.01586154406675,2.70719767744447,0.693138033939733,0,0,0.527758144464379,0,0.170093705276516,0,0,2.16757150035082,3.01013864312912,2.03901018436031,0,6.26849313222099,0,0,3.84675187674584,1.64007322849853,3.90454073597164,0,0.27470839445503,0.165018999841176,0,0,0,0.48335359146061,0.154048617114644,0,0,0.214840489736547,0.435050081742686,0.255679882248303,0.445160178233687,0.165284915360978,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0.316379424718726,0,3.07077349573601,0.42793898803392,0,0,0.719489830333259,0.274537029736055,0.235624804691373,0.606547444719948,0,0,1.95053495635836,0,0,1.36499911407986,0,1.13008116620243,0,0,0,1.15755106853338,0,0,0,0,0.143411352204052,0.0982490410131212,0,1.77380532035299,0,0,0,0,0,0.670302275535787,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0.106824071127473,0,5.63592496756373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334330152832435,1.98895302764489,0,0,0.307160702099232,0,0,0.111308705022906,0.16480387422676,0,0,0,0,0.102268682502155,0,0,1.52776196950456,1.25314822272926,0,0.0986434056369336,0,0,0,0,0,0,0.0874599999961957,0,3.07242310370849,3.81380475439149,3.30942754475111,0,0,0,0,0,0,0,0,0,5.44692317594951,0.557694977114413,0,0.113942055847001,0.46112780877612,3.05175990993225,0.869178975376065,0,0.183195186803725,0,0,0,0,0,0.392125068635479,0,0,0,0,0.489698424477443,2.82706142867882,0,0,0.353830258013357,0,0,0,0,0,0,0,0,9.39190170874031,0,0,0,0,0,0,0.103688191397247,0,0,0,0,4.55375273647668,0.554698692052555,0,5.29158946037639,2.43765778425127,0,0,1.25783230675811,4.23918039099876,2.05288642633023,0,0,0,0.274083849293502,0.596143835108969,0,1.17330829640882,4.32857629358282,0.213452994739353,3.79638258206047,0,0,0,0,0,0.942776138467182,1.76675467895698,2.196659772559,0.203996435272644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.12090684996954,4.86253564448882,4.71824806979294,0.885847333632739,0.592713324460491,0,0,0.160753148465019,0.137539436597234,0,0,0,0,0,0,0,0.105600336519406,0.717149357331379,2.68681276247223,0,0,0,0,0.864221491201268,0,0,0,1.19271615249795,0,0,0,0,0,5.47477881229854,0.704815022316672,0,0,0,0,0,0.487170393523584,1.27668251554036,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0.149254802886874,0,0,0.189403005275089,0,0.889811221596536,0,0,0,0,0.159296767163702,0,0,0,0,0.521745061811734,0,0,0.406870733204662,0.363697318405119,0.107410557042488,0,0.398095888698616,0,0,0,0,0,0,0,3.17388295717181,1.85217979459067,2.69210374957114,0.537266523244462,2.47041157728778,3.94711289241673,4.94729608648467,4.05119480368921,3.88567613502067,4.86858885317099,8.98118888501116,1.82315973706429,0,0,0,0,0.327609848846413,2.21195617878347,2.3244333569449,0,0,0,0,0.368211900503681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8374728641192,0,0,0,0,0,0,0,0,8.53885150958923,0.11796972334774,0.183428598521679,2.07946199070609,0,0,0,0,1.61364054962816,0,0.523813388962845,1.47394725759087,0.887136517302272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171488009437418,0,0,2.6002644994473,1.89093383216518,0,0,0,0,7.12561051021451,2.38875843943525,0,0,0,0,0,0,0,0,0,0.946656005844523,2.47118873801557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| ||
|short_description=p3@CUX1 | |short_description=p3@CUX1 | ||
}} | }} |
Latest revision as of 18:35, 24 September 2015
Short description: | p3@CUX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CUX1_5end |
Coexpression cluster: | C619_squamous_bile_Small_Mammary_mucinous_Tracheal_giant |
Association with transcript: | -1bp_to_ENST00000487284, uc003uyz.2_5end |
EntrezGene: | CUX1 |
HGNC: | 2557 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.26e-29 | 253 |
squamous epithelial cell | 3.84e-12 | 63 |
mesothelial cell | 7.50e-12 | 19 |
retinal pigment epithelial cell | 4.47e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
larynx | 3.07e-20 | 9 |
digestive system | 6.34e-17 | 145 |
digestive tract | 6.34e-17 | 145 |
primitive gut | 6.34e-17 | 145 |
subdivision of digestive tract | 2.45e-15 | 118 |
segment of respiratory tract | 2.93e-15 | 47 |
endoderm-derived structure | 3.55e-15 | 160 |
endoderm | 3.55e-15 | 160 |
presumptive endoderm | 3.55e-15 | 160 |
respiratory primordium | 1.03e-14 | 38 |
endoderm of foregut | 1.03e-14 | 38 |
endo-epithelium | 3.59e-13 | 82 |
respiratory tract | 1.62e-12 | 54 |
upper respiratory tract | 2.99e-12 | 19 |
foregut | 6.24e-11 | 87 |
respiratory system | 1.67e-10 | 74 |
gut epithelium | 1.18e-09 | 54 |
epithelial bud | 5.71e-08 | 37 |
trunk region element | 1.78e-07 | 101 |
pigmented layer of retina | 4.47e-07 | 3 |
presumptive retinal pigmented epithelium | 4.47e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.09e-41 | 106 |
cell type cancer | 7.92e-36 | 143 |
disease of cellular proliferation | 2.94e-25 | 239 |
cancer | 4.31e-25 | 235 |
squamous cell carcinoma | 5.99e-17 | 14 |
lung cancer | 2.54e-08 | 15 |
respiratory system cancer | 1.06e-07 | 16 |
disease of anatomical entity | 2.52e-07 | 39 |