FFCP PHASE1:Hg19::chr13:75890705..75890726,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9882 | |EntrezGene=9882 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19165 | |HGNC=19165 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=12bp_to_uc010tht.1,uc010thu.1_5end | |association_with_transcript=12bp_to_uc010tht.1,uc010thu.1_5end | ||
|cluster_id=chr13:75890705..75890726,- | |||
|coexpression_cluster_id=C144 | |coexpression_cluster_id=C144 | ||
|description=CAGE_peak_8_at_TBC1D4_5end | |description=CAGE_peak_8_at_TBC1D4_5end | ||
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|ontology_enrichment_celltype=CL:0000624!6.46e-10!6;CL:0002087!1.24e-07!119;CL:0000738!1.57e-07!140;CL:0000990!1.83e-07!8;CL:0000840!5.69e-07!5;CL:0001029!5.69e-07!5;CL:0000791!7.75e-07!18;CL:0000789!7.75e-07!18;CL:0002420!7.75e-07!18;CL:0002419!7.75e-07!18;CL:0000790!7.75e-07!18 | |ontology_enrichment_celltype=CL:0000624!6.46e-10!6;CL:0002087!1.24e-07!119;CL:0000738!1.57e-07!140;CL:0000990!1.83e-07!8;CL:0000840!5.69e-07!5;CL:0001029!5.69e-07!5;CL:0000791!7.75e-07!18;CL:0000789!7.75e-07!18;CL:0002420!7.75e-07!18;CL:0002419!7.75e-07!18;CL:0000790!7.75e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0000624;4.87e-18;6!CL:0000840;1.36e-07;5!CL:0000898;5.99e-07;3!CL:0000860;7.74e-07;33!CL:0002057;7.74e-07;33 | |ontology_enrichment_celltype_v019=CL:0000624;4.87e-18;6!CL:0000840;1.36e-07;5!CL:0000898;5.99e-07;3!CL:0000860;7.74e-07;33!CL:0002057;7.74e-07;33 | ||
|ontology_enrichment_celltype_v019_2=CL:0000624,2.05e-18,6;CL:0002087,2.40e-08,115;CL:0002194,2.79e-08,59;CL:0000576,2.79e-08,59;CL:0000040,2.79e-08,59;CL:0000559,2.79e-08,59;CL:0002009,6.17e-08,61;CL:0002031,7.69e-08,120;CL:0000840,1.32e-07,5;CL:0001029,1.32e-07,5;CL:0000839,3.63e-07,66;CL:0000898,4.33e-07,3;CL:0000557,5.01e-07,67 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.24e-40!115;UBERON:0001049!3.73e-16!57;UBERON:0005068!3.73e-16!57;UBERON:0006241!3.73e-16!57;UBERON:0007135!3.73e-16!57;UBERON:0002616!7.93e-12!59;UBERON:0002780!5.96e-11!41;UBERON:0001890!5.96e-11!41;UBERON:0006240!5.96e-11!41;UBERON:0002020!1.30e-10!34;UBERON:0003528!1.30e-10!34;UBERON:0001017!1.41e-10!82;UBERON:0003080!1.51e-10!42;UBERON:0005743!1.96e-10!86;UBERON:0001893!2.23e-10!34;UBERON:0001869!4.21e-10!32;UBERON:0002390!5.07e-10!102;UBERON:0003061!5.07e-10!102;UBERON:0003075!7.22e-10!86;UBERON:0007284!7.22e-10!86;UBERON:0002791!8.64e-10!33;UBERON:0002346!1.14e-09!90;UBERON:0002193!1.20e-09!112;UBERON:0000955!1.82e-09!69;UBERON:0006238!1.82e-09!69;UBERON:0000073!1.40e-08!94;UBERON:0001016!1.40e-08!94;UBERON:0002308!2.35e-08!9;UBERON:0000125!2.35e-08!9;UBERON:0003076!3.38e-07!15;UBERON:0003057!3.38e-07!15;UBERON:0003056!8.00e-07!61 | |ontology_enrichment_uberon=UBERON:0007023!5.24e-40!115;UBERON:0001049!3.73e-16!57;UBERON:0005068!3.73e-16!57;UBERON:0006241!3.73e-16!57;UBERON:0007135!3.73e-16!57;UBERON:0002616!7.93e-12!59;UBERON:0002780!5.96e-11!41;UBERON:0001890!5.96e-11!41;UBERON:0006240!5.96e-11!41;UBERON:0002020!1.30e-10!34;UBERON:0003528!1.30e-10!34;UBERON:0001017!1.41e-10!82;UBERON:0003080!1.51e-10!42;UBERON:0005743!1.96e-10!86;UBERON:0001893!2.23e-10!34;UBERON:0001869!4.21e-10!32;UBERON:0002390!5.07e-10!102;UBERON:0003061!5.07e-10!102;UBERON:0003075!7.22e-10!86;UBERON:0007284!7.22e-10!86;UBERON:0002791!8.64e-10!33;UBERON:0002346!1.14e-09!90;UBERON:0002193!1.20e-09!112;UBERON:0000955!1.82e-09!69;UBERON:0006238!1.82e-09!69;UBERON:0000073!1.40e-08!94;UBERON:0001016!1.40e-08!94;UBERON:0002308!2.35e-08!9;UBERON:0000125!2.35e-08!9;UBERON:0003076!3.38e-07!15;UBERON:0003057!3.38e-07!15;UBERON:0003056!8.00e-07!61 | ||
|ontology_enrichment_uberon_v019=UBERON:0004177;4.08e-14;5!UBERON:0005057;4.08e-14;5!UBERON:0002370;1.66e-09;2!UBERON:0005058;1.66e-09;2!UBERON:0009113;1.66e-09;2!UBERON:0002106;8.16e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0004177;4.08e-14;5!UBERON:0005057;4.08e-14;5!UBERON:0002370;1.66e-09;2!UBERON:0005058;1.66e-09;2!UBERON:0009113;1.66e-09;2!UBERON:0002106;8.16e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,2.46e-15,7;UBERON:0005057,2.46e-15,7;UBERON:0002390,8.76e-15,98;UBERON:0003061,8.76e-15,98;UBERON:0002193,1.70e-14,108;UBERON:0002405,1.25e-12,93;UBERON:0002370,3.64e-10,4;UBERON:0005058,3.64e-10,4;UBERON:0009113,3.64e-10,4;UBERON:0003295,3.64e-10,4;UBERON:0005562,3.64e-10,4;UBERON:0002371,4.12e-07,76;UBERON:0001042,4.42e-07,10;UBERON:0009145,4.42e-07,10;UBERON:0003351,6.37e-07,6;UBERON:0002106,7.17e-07,3;UBERON:0004854,7.17e-07,3;UBERON:0009034,7.17e-07,3;UBERON:0002095,7.17e-07,3;UBERON:0004782,7.17e-07,3;UBERON:0003281,7.17e-07,3;UBERON:0009664,7.17e-07,3;UBERON:0002296,7.17e-07,3;UBERON:0005602,7.17e-07,3;UBERON:0001179,7.17e-07,3;UBERON:0006293,7.17e-07,3 | |||
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| ||
|short_description=p8@TBC1D4 | |short_description=p8@TBC1D4 | ||
}} | }} |
Latest revision as of 23:33, 17 September 2015
Short description: | p8@TBC1D4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_TBC1D4_5end |
Coexpression cluster: | C144_CD4_tonsil_NK_appendix_CD8_splenic_mycosis |
Association with transcript: | 12bp_to_uc010tht.1, uc010thu.1_5end |
EntrezGene: | TBC1D4 |
HGNC: | 19165 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta T cell | 2.05e-18 | 6 |
nongranular leukocyte | 2.40e-08 | 115 |
monopoietic cell | 2.79e-08 | 59 |
monocyte | 2.79e-08 | 59 |
monoblast | 2.79e-08 | 59 |
promonocyte | 2.79e-08 | 59 |
macrophage dendritic cell progenitor | 6.17e-08 | 61 |
hematopoietic lineage restricted progenitor cell | 7.69e-08 | 120 |
immature conventional dendritic cell | 1.32e-07 | 5 |
common dendritic progenitor | 1.32e-07 | 5 |
myeloid lineage restricted progenitor cell | 3.63e-07 | 66 |
naive T cell | 4.33e-07 | 3 |
granulocyte monocyte progenitor cell | 5.01e-07 | 67 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 2.46e-15 | 7 |
immune organ | 2.46e-15 | 7 |
hematopoietic system | 8.76e-15 | 98 |
blood island | 8.76e-15 | 98 |
hemolymphoid system | 1.70e-14 | 108 |
immune system | 1.25e-12 | 93 |
thymus | 3.64e-10 | 4 |
hemolymphoid system gland | 3.64e-10 | 4 |
thymic region | 3.64e-10 | 4 |
pharyngeal gland | 3.64e-10 | 4 |
thymus primordium | 3.64e-10 | 4 |
bone marrow | 4.12e-07 | 76 |
chordate pharynx | 4.42e-07 | 10 |
pharyngeal region of foregut | 4.42e-07 | 10 |
pharyngeal epithelium | 6.37e-07 | 6 |
spleen | 7.17e-07 | 3 |
gastrointestinal system mesentery | 7.17e-07 | 3 |
stomach region | 7.17e-07 | 3 |
mesentery | 7.17e-07 | 3 |
gastrointestinal system serosa | 7.17e-07 | 3 |
mesentery of stomach | 7.17e-07 | 3 |
gut mesentery | 7.17e-07 | 3 |
dorsal mesentery | 7.17e-07 | 3 |
dorsal mesogastrium | 7.17e-07 | 3 |
peritoneal cavity | 7.17e-07 | 3 |
spleen primordium | 7.17e-07 | 3 |