FFCP PHASE1:Hg19::chr22:24129138..24129201,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6598 | |EntrezGene=6598 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11103 | |HGNC=11103 | ||
|TSSclassifier=strong | |||
|UniProt=Q12824,G5E975,B5MCL5,C9JTA6,Q17S11,Q9H836,Q86WI7 | |UniProt=Q12824,G5E975,B5MCL5,C9JTA6,Q17S11,Q9H836,Q86WI7 | ||
|association_with_transcript=0bp_to_ENST00000263121,ENST00000344921,ENST00000407082,ENST00000407422,ENST00000417137,NM_001007468,NM_003073,uc002zya.2,uc002zyb.2,uc002zyc.2,uc002zyd.2,uc002zyg.2,uc011ajb.1_5end | |association_with_transcript=0bp_to_ENST00000263121,ENST00000344921,ENST00000407082,ENST00000407422,ENST00000417137,NM_001007468,NM_003073,uc002zya.2,uc002zyb.2,uc002zyc.2,uc002zyd.2,uc002zyg.2,uc011ajb.1_5end | ||
|cluster_id=chr22:24129138..24129201,+ | |||
|description=CAGE_peak_1_at_SMARCB1_5end | |description=CAGE_peak_1_at_SMARCB1_5end | ||
|id=chr22:24129138..24129201,+ | |id=chr22:24129138..24129201,+ | ||
|ontology_enrichment_celltype=CL:0002321!2.28e-10!248;CL:0000220!8.30e-10!246;CL:1000449!9.42e-09!16;CL:0000066!1.43e-08!254;CL:0000221!2.09e-08!71;CL:0000133!5.98e-08!59;CL:0002681!2.75e-07!13;CL:0002584!2.75e-07!13;CL:0000115!3.28e-07!35;CL:1000507!6.51e-07!12;CL:1000494!6.51e-07!12 | |ontology_enrichment_celltype=CL:0002321!2.28e-10!248;CL:0000220!8.30e-10!246;CL:1000449!9.42e-09!16;CL:0000066!1.43e-08!254;CL:0000221!2.09e-08!71;CL:0000133!5.98e-08!59;CL:0002681!2.75e-07!13;CL:0002584!2.75e-07!13;CL:0000115!3.28e-07!35;CL:1000507!6.51e-07!12;CL:1000494!6.51e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:1000449;5.28e-09;15!CL:0002681;1.57e-07;12!CL:0002584;1.57e-07;12!CL:1000497;9.29e-07;17!CL:0002518;9.29e-07;17!CL:1000507;9.46e-07;10!CL:1000494;9.46e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.12e-10,250;CL:1000449,5.61e-09,15;CL:0000066,1.60e-08,253;CL:0000221,3.12e-08,72;CL:0000133,5.98e-08,59;CL:0000115,1.42e-07,36;CL:0002681,1.64e-07,12;CL:0002584,1.64e-07,12;CL:1000497,9.66e-07,17;CL:0002518,9.66e-07,17;CL:1000507,9.79e-07,10;CL:1000494,9.79e-07,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!4.49e-11!312;UBERON:0000483!1.82e-10!309;UBERON:0000064!5.76e-10!219;UBERON:0005085!6.41e-09!29;UBERON:0004211!9.42e-09!16;UBERON:0001285!9.42e-09!16;UBERON:0007684!9.42e-09!16;UBERON:0003220!9.42e-09!16;UBERON:0004208!9.42e-09!16;UBERON:0000924!3.18e-08!173;UBERON:0006601!3.18e-08!173;UBERON:0006555!6.73e-08!17;UBERON:0005103!6.73e-08!17;UBERON:0000083!6.73e-08!17;UBERON:0009201!6.73e-08!17;UBERON:0004819!6.73e-08!17;UBERON:0006553!6.73e-08!17;UBERON:0003074!6.73e-08!17;UBERON:0003060!6.73e-08!17;UBERON:0004121!1.19e-07!169;UBERON:0002104!2.26e-07!21;UBERON:0001225!2.75e-07!13;UBERON:0008987!2.75e-07!13;UBERON:0000080!2.97e-07!18;UBERON:0002120!2.97e-07!18;UBERON:0004875!2.97e-07!18;UBERON:0005721!2.97e-07!18;UBERON:0005754!2.97e-07!18;UBERON:0007297!2.97e-07!18;UBERON:0000970!3.26e-07!20;UBERON:0000019!4.95e-07!19;UBERON:0000047!4.95e-07!19;UBERON:0004088!4.95e-07!19;UBERON:0003072!4.95e-07!19;UBERON:0003071!4.95e-07!19;UBERON:0004128!4.95e-07!19;UBERON:0009773!6.51e-07!12;UBERON:0001231!6.51e-07!12;UBERON:0004810!6.51e-07!12 | |ontology_enrichment_uberon=UBERON:0000119!4.49e-11!312;UBERON:0000483!1.82e-10!309;UBERON:0000064!5.76e-10!219;UBERON:0005085!6.41e-09!29;UBERON:0004211!9.42e-09!16;UBERON:0001285!9.42e-09!16;UBERON:0007684!9.42e-09!16;UBERON:0003220!9.42e-09!16;UBERON:0004208!9.42e-09!16;UBERON:0000924!3.18e-08!173;UBERON:0006601!3.18e-08!173;UBERON:0006555!6.73e-08!17;UBERON:0005103!6.73e-08!17;UBERON:0000083!6.73e-08!17;UBERON:0009201!6.73e-08!17;UBERON:0004819!6.73e-08!17;UBERON:0006553!6.73e-08!17;UBERON:0003074!6.73e-08!17;UBERON:0003060!6.73e-08!17;UBERON:0004121!1.19e-07!169;UBERON:0002104!2.26e-07!21;UBERON:0001225!2.75e-07!13;UBERON:0008987!2.75e-07!13;UBERON:0000080!2.97e-07!18;UBERON:0002120!2.97e-07!18;UBERON:0004875!2.97e-07!18;UBERON:0005721!2.97e-07!18;UBERON:0005754!2.97e-07!18;UBERON:0007297!2.97e-07!18;UBERON:0000970!3.26e-07!20;UBERON:0000019!4.95e-07!19;UBERON:0000047!4.95e-07!19;UBERON:0004088!4.95e-07!19;UBERON:0003072!4.95e-07!19;UBERON:0003071!4.95e-07!19;UBERON:0004128!4.95e-07!19;UBERON:0009773!6.51e-07!12;UBERON:0001231!6.51e-07!12;UBERON:0004810!6.51e-07!12 | ||
|ontology_enrichment_uberon_v019=UBERON:0006555;5.28e-09;15!UBERON:0004819;5.28e-09;15!UBERON:0001285;5.28e-09;15!UBERON:0007684;5.28e-09;15!UBERON:0000353;1.23e-07;15!UBERON:0001225;1.57e-07;12!UBERON:0008987;1.57e-07;12!UBERON:0002104;2.30e-07;21!UBERON:0000970;3.26e-07;20!UBERON:0000019;5.03e-07;19!UBERON:0000047;5.03e-07;19!UBERON:0004088;5.03e-07;19!UBERON:0010230;5.03e-07;19!UBERON:0004211;9.46e-07;10!UBERON:0009773;9.46e-07;10!UBERON:0001231;9.46e-07;10!UBERON:0004810;9.46e-07;10 | |||
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| ||
|short_description=p1@SMARCB1 | |short_description=p1@SMARCB1 | ||
}} | }} |
Latest revision as of 09:20, 19 September 2015
Short description: | p1@SMARCB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SMARCB1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000263121, ENST00000344921, ENST00000407082, ENST00000407422, ENST00000417137, NM_001007468, NM_003073, uc002zya.2, uc002zyb.2, uc002zyc.2, uc002zyd.2, uc002zyg.2, uc011ajb.1_5end |
EntrezGene: | SMARCB1 |
HGNC: | 11103 |
UniProt: | Q12824G5E975B5MCL5C9JTA6Q17S11Q9H836Q86WI7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.12e-10 | 250 |
epithelial cell of nephron | 5.61e-09 | 15 |
epithelial cell | 1.60e-08 | 253 |
ectodermal cell | 3.12e-08 | 72 |
neurectodermal cell | 5.98e-08 | 59 |
endothelial cell | 1.42e-07 | 36 |
kidney cortical cell | 1.64e-07 | 12 |
renal cortical epithelial cell | 1.64e-07 | 12 |
kidney cell | 9.66e-07 | 17 |
kidney epithelial cell | 9.66e-07 | 17 |
kidney tubule cell | 9.79e-07 | 10 |
nephron tubule epithelial cell | 9.79e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
cell layer | 7.83e-12 | 309 |
epithelium | 3.35e-11 | 306 |
nephron epithelium | 5.61e-09 | 15 |
renal tubule | 5.61e-09 | 15 |
nephron tubule | 5.61e-09 | 15 |
nephron | 5.61e-09 | 15 |
uriniferous tubule | 5.61e-09 | 15 |
nephrogenic mesenchyme | 5.61e-09 | 15 |
ectodermal placode | 1.03e-08 | 31 |
ectoderm-derived structure | 1.19e-08 | 171 |
ectoderm | 1.19e-08 | 171 |
presumptive ectoderm | 1.19e-08 | 171 |
excretory tube | 4.59e-08 | 16 |
kidney epithelium | 4.59e-08 | 16 |
parenchyma | 1.22e-07 | 15 |
cortex of kidney | 1.64e-07 | 12 |
renal parenchyma | 1.64e-07 | 12 |
eye | 2.26e-07 | 21 |
visual system | 2.26e-07 | 21 |
camera-type eye | 3.44e-07 | 20 |
simple eye | 3.44e-07 | 20 |
immature eye | 3.44e-07 | 20 |
ocular region | 3.44e-07 | 20 |
eyeball of camera-type eye | 3.44e-07 | 20 |
optic cup | 3.44e-07 | 20 |
optic vesicle | 3.44e-07 | 20 |
eye primordium | 3.44e-07 | 20 |
face | 8.72e-07 | 22 |
nephron tubule epithelium | 9.79e-07 | 10 |