FFCP PHASE1:Hg19::chr15:62352961..62352973,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
|||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54832 | |EntrezGene=54832 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23594 | |HGNC=23594 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-289bp_to_ENST00000249837_5end | |association_with_transcript=-289bp_to_ENST00000249837_5end | ||
|cluster_id=chr15:62352961..62352973,- | |||
|coexpression_cluster_id=C115 | |coexpression_cluster_id=C115 | ||
|description=CAGE_peak_8_at_VPS13C_5end | |description=CAGE_peak_8_at_VPS13C_5end | ||
|id=chr15:62352961..62352973,- | |id=chr15:62352961..62352973,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002535;2.37e-15;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002535,2.74e-15,2 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.84e-09;29 | |||
|ontology_enrichment_disease=DOID:305!3.00e-13!106;DOID:0050687!3.44e-10!143;DOID:3119!8.85e-08!14 | |ontology_enrichment_disease=DOID:305!3.00e-13!106;DOID:0050687!3.44e-10!143;DOID:3119!8.85e-08!14 | ||
|ontology_enrichment_disease_v019=DOID:4362;6.39e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:4362,6.77e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.14e-10!115;UBERON:0005156!8.62e-07!59;UBERON:0000990!8.62e-07!59 | |ontology_enrichment_uberon=UBERON:0007023!1.14e-10!115;UBERON:0005156!8.62e-07!59;UBERON:0000990!8.62e-07!59 | ||
|ontology_enrichment_uberon_v019=UBERON:0000007;1.13e-57;2!UBERON:0003296;1.78e-29;4!UBERON:0010133;1.78e-29;4!UBERON:0001894;2.46e-17;7!UBERON:0003127;2.37e-15;2!UBERON:0006955;2.37e-15;2!UBERON:0004801;2.37e-15;2!UBERON:0005178;6.36e-07;34!UBERON:0002224;6.36e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000007,1.13e-57,2;UBERON:0003296,1.78e-29,4;UBERON:0010133,1.78e-29,4;UBERON:0001894,2.46e-17,7;UBERON:0006222,2.46e-17,7;UBERON:0003127,2.37e-15,2;UBERON:0006955,2.74e-15,2;UBERON:0004801,2.74e-15,2;UBERON:0005178,3.58e-08,34;UBERON:0002224,3.58e-08,34;UBERON:0005181,5.87e-08,35;UBERON:0008947,2.22e-07,38;UBERON:0003258,2.22e-07,38 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164201178899891,0.157421562627358,0,0,0,0,0,0,0.309868802321207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0.241011029883482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0.215627574859517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184161977871793,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0.165018999841176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,1.0077309914171,0,0,0,0.0898683511473268,0.179021174675609,0,0,0,0,0,0,0,0.260427761085233,0.0874599999961957,0,0,0.254253650292766,0,0.344743373241465,0,0,0,0.120596438625408,0,0.110579259931225,0,0,0.10893846351899,0,0.153900517007594,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0.326465616318295,0,0,0,0,0,0,0.123563938946503,0,0.067401132980677,0,0,0,0,0,0.789168805698781,0,0,0,0,0,0,0,0,0,0.853828638089378,0,0.867798691675654,0,0.0870592065804026,0.873633341210151,0,0,0,0,0,0,0.225980740780532,0,0,0.0633107959558787,0.586654148204409,0,0,0,0.432271251462318,0.114536596165916,0.343189995723929,0,0,0.707082103850386,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0.157566364614447,0,0,0.295282444544246,0,0,0,0,0.275078873194468,0,0,0,0.121499113316049,0,0.394028536495991,0,0,0.179287339332845,0.191915197319445,0,0,0,0,0.864221491201268,0,0,0,0,0,0.146552233678082,0,0,0.26446520348538,0,1.40963004463334,0.640724475406168,2.04365596629566,0,0,0.197611631897944,0.121792598380896,0,0,0,0,0,0.628216385000937,0,0,0.1251909307065,0,0.443716206147409,0,0,0,0,0,0,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0.138258436151731,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0.376051641746286,0,0,0,0,0.295712172434091,0,0,0.206686796501184,0.0634158101939068,0,0.548257766857182,0,0,0.127762427639595,0,0,3.64179362541979,6.60220354918763,0,0,0,0,0,0.118193840883968,0,0.156986185701028,0.157115589916002,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0.098150233615243,0,0,0,0,0,0,0.994753875806841,0,0,0,0.452888530700021,0.0771741581079447,0,2.82190377816914,0,0,0,0.297046400327086,0,0,0,0,0,0,0,0.481448200135009,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0.101988829741982,0.26721740526556,0.551369397209069,0,0.454672189309436,0,0,0,0.213233981900981,0.952257725854961,0.129177819672012,0.0620747142958579,0,0.636471582781649,0,0,0,0.0673520530145875,1.29099969706817,0.665320713092027,0.244209805832924,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164201178899891,0.157421562627358,0,0,0,0,0,0,0.309868802321207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0.241011029883482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0.215627574859517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184161977871793,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0.165018999841176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,1.0077309914171,0,0,0,0.0898683511473268,0.179021174675609,0,0,0,0,0,0,0,0.260427761085233,0.0874599999961957,0,0,0.254253650292766,0,0.344743373241465,0,0,0,0.120596438625408,0,0.110579259931225,0,0,0.10893846351899,0,0.153900517007594,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0.326465616318295,0,0,0,0,0,0,0.123563938946503,0,0.067401132980677,0,0,0,0,0,0.789168805698781,0,0,0,0,0,0,0,0,0,0.853828638089378,0,0.867798691675654,0,0.0870592065804026,0.873633341210151,0,0,0,0,0,0,0.225980740780532,0,0,0.0633107959558787,0.586654148204409,0,0,0,0.432271251462318,0.114536596165916,0.343189995723929,0,0,0.707082103850386,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0.157566364614447,0,0,0.295282444544246,0,0,0,0,0.275078873194468,0,0,0,0.121499113316049,0,0.394028536495991,0,0,0.179287339332845,0.191915197319445,0,0,0,0,0.864221491201268,0,0,0,0,0,0.146552233678082,0,0,0.26446520348538,0,1.40963004463334,0.640724475406168,2.04365596629566,0,0,0.197611631897944,0.121792598380896,0,0,0,0,0,0.628216385000937,0,0,0.1251909307065,0,0.443716206147409,0,0,0,0,0,0,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0.138258436151731,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0.376051641746286,0,0,0,0,0.295712172434091,0,0,0.206686796501184,0.0634158101939068,0,0.548257766857182,0,0,0.127762427639595,0,0,3.64179362541979,6.60220354918763,0,0,0,0,0,0.118193840883968,0,0.156986185701028,0.157115589916002,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0.098150233615243,0,0,0,0,0,0,0.994753875806841,0,0,0,0.452888530700021,0.0771741581079447,0,2.82190377816914,0,0,0,0.297046400327086,0,0,0,0,0,0,0,0.481448200135009,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0.101988829741982,0.26721740526556,0.551369397209069,0,0.454672189309436,0,0,0,0.213233981900981,0.952257725854961,0.129177819672012,0.0620747142958579,0,0.636471582781649,0,0,0,0.0673520530145875,1.29099969706817,0.665320713092027,0.244209805832924,0,0,0,0,0,0,0,0,0 | ||
|short_description=p8@VPS13C | |short_description=p8@VPS13C | ||
}} | }} |
Latest revision as of 10:43, 18 September 2015
Short description: | p8@VPS13C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_VPS13C_5end |
Coexpression cluster: | C115_pituitary_Neural_caudate_putamen_amygdala_medulla_hippocampus |
Association with transcript: | -289bp_to_ENST00000249837_5end |
EntrezGene: | VPS13C |
HGNC: | 23594 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 2.74e-15 | 2 |
Ontology term | p-value | n |
---|---|---|
pituitary gland | 1.13e-57 | 2 |
gland of diencephalon | 1.78e-29 | 4 |
neuroendocrine gland | 1.78e-29 | 4 |
diencephalon | 2.46e-17 | 7 |
future diencephalon | 2.46e-17 | 7 |
open tracheal system trachea | 2.37e-15 | 2 |
uterine epithelium | 2.74e-15 | 2 |
cervix epithelium | 2.74e-15 | 2 |
thoracic cavity element | 3.58e-08 | 34 |
thoracic cavity | 3.58e-08 | 34 |
thoracic segment organ | 5.87e-08 | 35 |
respiratory primordium | 2.22e-07 | 38 |
endoderm of foregut | 2.22e-07 | 38 |
Ontology term | p-value | n |
---|---|---|
cervical cancer | 6.77e-07 | 5 |