FFCP PHASE1:Hg19::chr6:35181816..35181850,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=222663 | |EntrezGene=222663 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13655 | |HGNC=13655 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IX30,Q8NAV8 | |UniProt=Q8IX30,Q8NAV8 | ||
|association_with_transcript=-339bp_to_ENST00000394681,NM_152753,uc003okf.1,uc003okg.1_5end | |association_with_transcript=-339bp_to_ENST00000394681,NM_152753,uc003okf.1,uc003okg.1_5end | ||
|cluster_id=chr6:35181816..35181850,+ | |||
|coexpression_cluster_id=C519 | |coexpression_cluster_id=C519 | ||
|description=CAGE_peak_1_at_SCUBE3_5end | |description=CAGE_peak_1_at_SCUBE3_5end | ||
|id=chr6:35181816..35181850,+ | |id=chr6:35181816..35181850,+ | ||
|ontology_enrichment_celltype=CL:0000055!4.13e-29!180;CL:0000057!2.10e-14!75;CL:0002334!1.79e-10!12;CL:0002620!1.94e-09!23;CL:0000680!2.29e-09!57;CL:0000056!2.29e-09!57;CL:0000355!2.29e-09!57;CL:0000183!2.74e-09!59;CL:0000187!3.17e-08!54;CL:0000499!1.48e-07!27;CL:0000062!4.73e-07!11;CL:0000375!4.73e-07!11;CL:0000335!4.73e-07!11;CL:0000188!5.15e-07!9;CL:0000393!7.78e-07!60;CL:0000211!7.78e-07!60 | |ontology_enrichment_celltype=CL:0000055!4.13e-29!180;CL:0000057!2.10e-14!75;CL:0002334!1.79e-10!12;CL:0002620!1.94e-09!23;CL:0000680!2.29e-09!57;CL:0000056!2.29e-09!57;CL:0000355!2.29e-09!57;CL:0000183!2.74e-09!59;CL:0000187!3.17e-08!54;CL:0000499!1.48e-07!27;CL:0000062!4.73e-07!11;CL:0000375!4.73e-07!11;CL:0000335!4.73e-07!11;CL:0000188!5.15e-07!9;CL:0000393!7.78e-07!60;CL:0000211!7.78e-07!60 | ||
|ontology_enrichment_celltype_v019=CL:0002334;7.77e-15;12!CL:0002620;2.85e-12;23!CL:0000499;5.19e-11;28!CL:0000188;1.02e-09;9!CL:0000062;1.47e-09;9!CL:0000327;5.65e-09;15!CL:0000680;1.92e-07;7!CL:0002320;3.64e-07;188!CL:0002540;6.15e-07;6!CL:0000153;9.29e-07;9!CL:0000447;9.29e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.55e-15,76;CL:0002334,7.83e-15,12;CL:0000048,3.11e-12,427;CL:0002620,3.34e-12,23;CL:0000723,1.44e-11,433;CL:0000034,4.10e-11,441;CL:0000499,8.87e-11,28;CL:0000188,1.08e-09,9;CL:0000062,7.01e-09,11;CL:0000375,7.01e-09,11;CL:0000335,7.01e-09,11;CL:0002320,7.65e-09,361;CL:0000327,8.19e-09,15;CL:0000680,3.89e-08,58;CL:0000056,3.89e-08,58;CL:0000355,3.89e-08,58;CL:0000134,5.77e-07,354;CL:0002540,6.11e-07,6;CL:0000136,7.79e-07,15;CL:0000187,9.00e-07,55;CL:0000153,9.42e-07,9;CL:0000447,9.42e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000335;9.11e-09;11 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004290!4.35e-12!70;UBERON:0000486!1.24e-11!82;UBERON:0000914!7.56e-11!83;UBERON:0002329!7.56e-11!83;UBERON:0003077!7.56e-11!83;UBERON:0003059!7.56e-11!83;UBERON:0007282!7.56e-11!83;UBERON:0009618!7.56e-11!83;UBERON:0007285!7.56e-11!83;UBERON:0002199!2.10e-09!45;UBERON:0002416!2.10e-09!45;UBERON:0002385!3.36e-09!63;UBERON:0001015!3.36e-09!63;UBERON:0000383!3.36e-09!63;UBERON:0001134!9.43e-09!61;UBERON:0002036!9.43e-09!61;UBERON:0003082!9.43e-09!61;UBERON:0000475!1.45e-08!365;UBERON:0002097!1.11e-07!40 | |ontology_enrichment_uberon=UBERON:0004290!4.35e-12!70;UBERON:0000486!1.24e-11!82;UBERON:0000914!7.56e-11!83;UBERON:0002329!7.56e-11!83;UBERON:0003077!7.56e-11!83;UBERON:0003059!7.56e-11!83;UBERON:0007282!7.56e-11!83;UBERON:0009618!7.56e-11!83;UBERON:0007285!7.56e-11!83;UBERON:0002199!2.10e-09!45;UBERON:0002416!2.10e-09!45;UBERON:0002385!3.36e-09!63;UBERON:0001015!3.36e-09!63;UBERON:0000383!3.36e-09!63;UBERON:0001134!9.43e-09!61;UBERON:0002036!9.43e-09!61;UBERON:0003082!9.43e-09!61;UBERON:0000475!1.45e-08!365;UBERON:0002097!1.11e-07!40 | ||
|ontology_enrichment_uberon_v019=UBERON:0004457;6.17e-10;9!UBERON:0000042;6.17e-10;9!UBERON:0002097;6.73e-09;41!UBERON:0002204;1.45e-08;70!UBERON:0002199;1.99e-08;46!UBERON:0002416;1.99e-08;46!UBERON:0002385;2.88e-08;31!UBERON:0001015;2.88e-08;31!UBERON:0000383;2.88e-08;31!UBERON:0001013;3.36e-08;14!UBERON:0001134;5.81e-08;16!UBERON:0002036;5.81e-08;16!UBERON:0003688;1.04e-07;6!UBERON:0002358;1.04e-07;6!UBERON:0003684;1.04e-07;6!UBERON:0001178;1.04e-07;6!UBERON:0004765;2.53e-07;26!UBERON:0004905;3.07e-07;8!UBERON:0000982;3.07e-07;8!UBERON:0004770;3.07e-07;8!UBERON:0003102;6.04e-07;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,2.60e-13,46;UBERON:0002416,2.60e-13,46;UBERON:0002097,1.52e-10,41;UBERON:0007503,2.71e-10,78;UBERON:0002329,4.48e-10,71;UBERON:0003059,4.48e-10,71;UBERON:0007282,4.48e-10,71;UBERON:0004290,4.48e-10,71;UBERON:0009618,4.48e-10,71;UBERON:0003077,8.67e-10,72;UBERON:0007285,8.67e-10,72;UBERON:0007524,1.64e-09,73;UBERON:0000486,3.88e-09,83;UBERON:0002384,4.92e-09,371;UBERON:0001013,3.49e-08,14;UBERON:0003688,1.03e-07,6;UBERON:0002358,1.03e-07,6;UBERON:0003684,1.03e-07,6;UBERON:0001178,1.03e-07,6;UBERON:0005256,1.74e-07,122;UBERON:0002385,2.70e-07,64;UBERON:0001015,2.70e-07,64;UBERON:0000383,2.70e-07,64;UBERON:0004905,2.95e-07,8;UBERON:0000982,2.95e-07,8;UBERON:0004770,2.95e-07,8;UBERON:0003104,3.16e-07,160;UBERON:0009142,3.16e-07,160;UBERON:0001134,4.29e-07,62;UBERON:0002036,4.29e-07,62;UBERON:0003082,4.29e-07,62;UBERON:0004457,7.98e-07,12;UBERON:0000042,7.98e-07,12 | |||
|phase1_expression=47.7814137481564,20.3395497696434,9.44394507443007,51.0373821600965,10.2801051718276,5.23403114460221,43.0609792886128,10.7392378482561,0,0,0,0.218441372130172,0.263766978228454,3.21792517696121,9.27912652038164,1.34465029290355,0.602694528023977,1.46062018077475,2.43966399395253,1.72369481307503,1.22400414746552,0.626909442956176,0,0.273748850145768,2.38531015230125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.1686349143074,31.584288370061,5.21447468258965,3.9764297352555,8.75942766544745,0.378139268656271,0.665188192387692,1.05401742831751,0.327447688744282,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0.417989933073621,0,0.71153252537342,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0.366403487860815,0,0,0,89.4549513051573,0.886413581652058,0,1.43418310374407,1.41867352879343,11.7742296029885,2.1349799145941,0.98667019366864,0.311211035399766,0,0.326923806226917,1.66493170409425,1.72852777344,0.234321431833797,7.17968176709737,2.2818872861778,14.0481759718693,0.352303495931295,1.13311061057692,0.842704840213491,0,0.122834317311768,0,0,0,4.55080680969013,0.718618141816238,0,0.500474079487857,0,0,0.30648779579902,5.25833206173089,0.226864366320042,26.7290557176404,4.69826255400848,4.23863802319124,40.2122068753099,3.60683852334536,17.5195567231028,9.49195967291108,17.0464095563679,13.738617727729,14.6411589061586,3.22174645248048,0,81.6522062788213,15.0120626359184,26.2818918081256,0,0.272746120590835,0.286804595389004,0.487894824518382,0.397589304964456,0.232387885739037,2.07322110030741,0,0.72995471815166,21.9029345261742,13.5080597020506,23.4829366299217,1.85747171212792,2.16563844500876,0,0,0,0,0,0,0,0,0,0,2.80483547606892,0.4115740113314,4.41026134156626,0,0,0,0,0.245976877086227,0.171567810298526,0,0,0,0,0,0,1.44331342025273,0.927443239800615,4.10930429825376,0,0,0.570762456703795,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0,0.190493682876507,0,0,1.71072446022705,0,0,0.285826432630578,2.01835951821649,4.3596006883328,3.15354629030085,0.646358578788889,0,5.917119267892,7.44626726437637,14.5610411675913,8.48784335065069,7.09245660116391,29.572861870787,0,0.542621605391443,0,4.88604276440603,0.355391948742546,0,0,0,0,0,0,0,15.5756156069529,25.2696258835051,25.6746429073293,66.8889636804216,1.43833425785268,2.14873155887875,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,1.59498939234882,7.50255781589516,2.17012018959788,0.415941723061614,0,0,0.585707074963566,48.7532681558905,22.7407504055985,5.17365356462525,49.8169198901577,32.8177120004232,2.08520674723399,2.74121620447837,2.40200396667599,0,0,0,0,0,1.5119514666484,63.7637066094257,112.334164446862,56.9739991699139,11.4043842837574,55.264382899204,15.7636842720735,14.8418066444991,65.6933295599313,53.2685175939381,50.343946636465,5.19254429183621,89.7144121710885,0.362578348774867,0,0,1.37777337797528,10.3791965763829,7.6052160676466,0.451199612907412,0.0770153371044148,0,0,0,0,0,0,1.54227252690289,4.6060894382455,5.01689773854853,0,0,0,0,0,0.512900250232778,0,0,0.206082023295445,1.73981983154852,1.56768049849117,0,0,0,12.8572055328522,12.3238893691715,6.7541616879497,6.06480918931935,9.02330056893499,9.1360517165964,8.43743611419399,9.43739577855416,0,0,0,0.10115778085555,0.464845549297286,3.77774816196768,2.0911118104818,0.616067160352178,2.12922412126809,0.869932992075073,0,0.572499546967965,0,1.2655176988749,0.571890581771475,0.511795582622668,0,5.72765846266686,0,1.2591072030832,0,0.117812402345686,1.01091240786658,0,0.421258456238981,0,1.70599442741899,0,16.3799893689583,0.989838023675989,1.13008116620243,1.10273068709225,1.32687795048244,7.45366504931397,1.73632660280006,0.655894752046633,0.811641507850816,1.239293992399,1.40847801266121,0,0,0,12.7713983065415,7.17765960012058,5.59801318031833,0,0.349934720244983,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0.640944426764839,0.962479855263359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0.211125408127993,22.7142706606219,0.276283915531148,0.251932747854276,0.306806047506464,0,3.73247505194169,0.0898683511473268,0,0,3.15658898038188,0,1.11136990144637,0,0.0927680981618513,0,0.260427761085233,0.437299999980979,0,0,0,0,0,0,0.347249989866585,0,0.241192877250816,0,0,0.591095237907095,0.438770794307945,0,0,0.230850775511391,0,0,0,2.28159481036217,0.638002319463839,4.94627004370057,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0.141353071433941,0,0.995261931078505,0.265372693510018,0,0,0,0,0.202203398942031,0.802577647298789,0,0,0.19566461893209,0,1.57833761139756,2.41981432097328,1.83643656978294,2.21153028699708,0,0.103688191397247,0,0,0,0,0,0,1.04135843001079,0.0979923974143777,0,2.27144668714639,0,0,0,0,0.193978032976839,0,0.677942222341597,0.137041924646751,0.19871461170299,0.126621591911757,0.195551382734803,0,0.640358984218058,0.19980960958213,0,0.114536596165916,0,0,0.248505071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| 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| ||
|short_description=p1@SCUBE3 | |short_description=p1@SCUBE3 | ||
}} | }} |
Latest revision as of 10:16, 18 September 2015
Short description: | p1@SCUBE3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SCUBE3_5end |
Coexpression cluster: | C519_Preadipocyte_Ewing_Myoblast_spindle_Fibroblast_Adipocyte_Osteoblast |
Association with transcript: | -339bp_to_ENST00000394681, NM_152753, uc003okf.1, uc003okg.1_5end |
EntrezGene: | SCUBE3 |
HGNC: | 13655 |
UniProt: | Q8IX30Q8NAV8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.55e-15 | 76 |
preadipocyte | 7.83e-15 | 12 |
multi fate stem cell | 3.11e-12 | 427 |
skin fibroblast | 3.34e-12 | 23 |
somatic stem cell | 1.44e-11 | 433 |
stem cell | 4.10e-11 | 441 |
stromal cell | 8.87e-11 | 28 |
cell of skeletal muscle | 1.08e-09 | 9 |
osteoblast | 7.01e-09 | 11 |
osteoprogenitor cell | 7.01e-09 | 11 |
mesenchyme condensation cell | 7.01e-09 | 11 |
connective tissue cell | 7.65e-09 | 361 |
extracellular matrix secreting cell | 8.19e-09 | 15 |
muscle precursor cell | 3.89e-08 | 58 |
myoblast | 3.89e-08 | 58 |
multi-potent skeletal muscle stem cell | 3.89e-08 | 58 |
mesenchymal cell | 5.77e-07 | 354 |
mesenchymal stem cell of the bone marrow | 6.11e-07 | 6 |
fat cell | 7.79e-07 | 15 |
muscle cell | 9.00e-07 | 55 |
GAG secreting cell | 9.42e-07 | 9 |
carbohydrate secreting cell | 9.42e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
integument | 2.60e-13 | 46 |
integumental system | 2.60e-13 | 46 |
skin of body | 1.52e-10 | 41 |
epithelial vesicle | 2.71e-10 | 78 |
somite | 4.48e-10 | 71 |
presomitic mesoderm | 4.48e-10 | 71 |
presumptive segmental plate | 4.48e-10 | 71 |
dermomyotome | 4.48e-10 | 71 |
trunk paraxial mesoderm | 4.48e-10 | 71 |
paraxial mesoderm | 8.67e-10 | 72 |
presumptive paraxial mesoderm | 8.67e-10 | 72 |
dense mesenchyme tissue | 1.64e-09 | 73 |
multilaminar epithelium | 3.88e-09 | 83 |
connective tissue | 4.92e-09 | 371 |
adipose tissue | 3.49e-08 | 14 |
omentum | 1.03e-07 | 6 |
peritoneum | 1.03e-07 | 6 |
abdominal cavity | 1.03e-07 | 6 |
visceral peritoneum | 1.03e-07 | 6 |
trunk mesenchyme | 1.74e-07 | 122 |
muscle tissue | 2.70e-07 | 64 |
musculature | 2.70e-07 | 64 |
musculature of body | 2.70e-07 | 64 |
articulation | 2.95e-07 | 8 |
skeletal joint | 2.95e-07 | 8 |
articular system | 2.95e-07 | 8 |
mesenchyme | 3.16e-07 | 160 |
entire embryonic mesenchyme | 3.16e-07 | 160 |
skeletal muscle tissue | 4.29e-07 | 62 |
striated muscle tissue | 4.29e-07 | 62 |
myotome | 4.29e-07 | 62 |
cavity lining | 7.98e-07 | 12 |
serous membrane | 7.98e-07 | 12 |