FFCP PHASE1:Hg19::chr19:18433875..18433909,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=25804 | |EntrezGene=25804 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17259 | |HGNC=17259 | ||
|TSSclassifier=strong | |||
|UniProt=Q9Y4Z0 | |UniProt=Q9Y4Z0 | ||
|association_with_transcript=91bp_to_ENST00000252816,NM_001252129,NM_012321,uc002niq.2_5end | |association_with_transcript=91bp_to_ENST00000252816,NM_001252129,NM_012321,uc002niq.2_5end | ||
|cluster_id=chr19:18433875..18433909,- | |||
|coexpression_cluster_id=C3766 | |coexpression_cluster_id=C3766 | ||
|description=CAGE_peak_1_at_LSM4_5end | |description=CAGE_peak_1_at_LSM4_5end | ||
|id=chr19:18433875..18433909,- | |id=chr19:18433875..18433909,- | ||
|ontology_enrichment_celltype=CL:0000066!1.30e-25!254;CL:0002321!5.28e-21!248;CL:0000548!7.02e-21!679;CL:0000004!7.02e-21!679;CL:0000255!7.02e-21!679;CL:0000220!2.80e-20!246;CL:0000012!4.67e-20!682;CL:0000144!1.30e-09!625;CL:0000221!1.33e-09!71;CL:0000003!2.27e-09!722;CL:0000055!2.18e-08!180;CL:0000222!1.63e-07!119;CL:0000333!1.79e-07!41;CL:0000133!2.09e-07!59;CL:0000183!2.30e-07!59;CL:0000393!3.18e-07!60;CL:0000211!3.18e-07!60;CL:1000449!6.85e-07!16 | |ontology_enrichment_celltype=CL:0000066!1.30e-25!254;CL:0002321!5.28e-21!248;CL:0000548!7.02e-21!679;CL:0000004!7.02e-21!679;CL:0000255!7.02e-21!679;CL:0000220!2.80e-20!246;CL:0000012!4.67e-20!682;CL:0000144!1.30e-09!625;CL:0000221!1.33e-09!71;CL:0000003!2.27e-09!722;CL:0000055!2.18e-08!180;CL:0000222!1.63e-07!119;CL:0000333!1.79e-07!41;CL:0000133!2.09e-07!59;CL:0000183!2.30e-07!59;CL:0000393!3.18e-07!60;CL:0000211!3.18e-07!60;CL:1000449!6.85e-07!16 | ||
|ontology_enrichment_celltype_v019=CL:1000449;1.31e-07;15!CL:1000497;6.54e-07;17!CL:0002518;6.54e-07;17!CL:0002681;8.20e-07;12!CL:0002584;8.20e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.89e-26,253;CL:0002321,4.22e-21,250;CL:0000221,1.00e-09,72;CL:1000449,1.28e-07,15;CL:0000222,1.43e-07,121;CL:0000333,1.79e-07,41;CL:0000133,2.09e-07,59;CL:0000393,5.99e-07,61;CL:0000211,5.99e-07,61;CL:1000497,6.35e-07,17;CL:0002518,6.35e-07,17;CL:0002681,8.12e-07,12;CL:0002584,8.12e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!4.12e-17!239;DOID:162!1.15e-16!235;DOID:0050687!2.41e-10!143;DOID:305!1.13e-08!106;DOID:0050686!5.82e-08!137 | |ontology_enrichment_disease=DOID:14566!4.12e-17!239;DOID:162!1.15e-16!235;DOID:0050687!2.41e-10!143;DOID:305!1.13e-08!106;DOID:0050686!5.82e-08!137 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,4.12e-17,239;DOID:162,1.15e-16,235;DOID:0050687,2.41e-10,143;DOID:305,1.13e-08,106;DOID:0050686,5.82e-08,137 | |||
|ontology_enrichment_uberon=UBERON:0003104!1.39e-09!238;UBERON:0009142!1.39e-09!238;UBERON:0000119!3.80e-08!312;UBERON:0000072!4.26e-08!46;UBERON:0000483!9.18e-08!309;UBERON:0000481!1.45e-07!347;UBERON:0008947!2.10e-07!38;UBERON:0003258!2.10e-07!38;UBERON:0002100!2.26e-07!216;UBERON:0000064!2.33e-07!219;UBERON:0000486!2.92e-07!82;UBERON:0005256!3.29e-07!143;UBERON:0004211!6.85e-07!16;UBERON:0001285!6.85e-07!16;UBERON:0007684!6.85e-07!16;UBERON:0003220!6.85e-07!16;UBERON:0004208!6.85e-07!16;UBERON:0001737!8.43e-07!9 | |ontology_enrichment_uberon=UBERON:0003104!1.39e-09!238;UBERON:0009142!1.39e-09!238;UBERON:0000119!3.80e-08!312;UBERON:0000072!4.26e-08!46;UBERON:0000483!9.18e-08!309;UBERON:0000481!1.45e-07!347;UBERON:0008947!2.10e-07!38;UBERON:0003258!2.10e-07!38;UBERON:0002100!2.26e-07!216;UBERON:0000064!2.33e-07!219;UBERON:0000486!2.92e-07!82;UBERON:0005256!3.29e-07!143;UBERON:0004211!6.85e-07!16;UBERON:0001285!6.85e-07!16;UBERON:0007684!6.85e-07!16;UBERON:0003220!6.85e-07!16;UBERON:0004208!6.85e-07!16;UBERON:0001737!8.43e-07!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0000072;8.76e-09;37!UBERON:0006555;1.31e-07;15!UBERON:0004819;1.31e-07;15!UBERON:0001285;1.31e-07;15!UBERON:0007684;1.31e-07;15!UBERON:0006554;3.19e-07;30!UBERON:0001008;3.19e-07;30!UBERON:0002113;6.05e-07;24!UBERON:0011143;6.05e-07;24!UBERON:0000353;6.70e-07;15!UBERON:0001225;8.20e-07;12!UBERON:0008987;8.20e-07;12!UBERON:0001737;8.36e-07;9!UBERON:0001557;8.36e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,2.96e-08,78;UBERON:0000119,3.96e-08,309;UBERON:0002100,4.42e-08,199;UBERON:0000483,9.57e-08,306;UBERON:0000072,9.72e-08,47;UBERON:0004211,1.28e-07,15;UBERON:0009773,1.28e-07,15;UBERON:0001231,1.28e-07,15;UBERON:0001285,1.28e-07,15;UBERON:0007684,1.28e-07,15;UBERON:0004208,1.28e-07,15;UBERON:0008947,2.10e-07,38;UBERON:0003258,2.10e-07,38;UBERON:0000486,4.91e-07,83;UBERON:0000353,6.59e-07,15;UBERON:0001225,8.12e-07,12;UBERON:0008987,8.12e-07,12;UBERON:0001737,8.43e-07,9;UBERON:0006554,9.41e-07,47 | |||
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|short_description=p1@LSM4 | |short_description=p1@LSM4 | ||
}} | }} |
Latest revision as of 15:37, 16 September 2015
Short description: | p1@LSM4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LSM4_5end |
Coexpression cluster: | C3766_Alveolar_Renal_chronic_Placental_nonsmall_acute_carcinoid |
Association with transcript: | 91bp_to_ENST00000252816, NM_001252129, NM_012321, uc002niq.2_5end |
EntrezGene: | LSM4 |
HGNC: | 17259 |
UniProt: | Q9Y4Z0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.89e-26 | 253 |
embryonic cell | 4.22e-21 | 250 |
ectodermal cell | 1.00e-09 | 72 |
epithelial cell of nephron | 1.28e-07 | 15 |
mesodermal cell | 1.43e-07 | 121 |
migratory neural crest cell | 1.79e-07 | 41 |
neurectodermal cell | 2.09e-07 | 59 |
electrically responsive cell | 5.99e-07 | 61 |
electrically active cell | 5.99e-07 | 61 |
kidney cell | 6.35e-07 | 17 |
kidney epithelial cell | 6.35e-07 | 17 |
kidney cortical cell | 8.12e-07 | 12 |
renal cortical epithelial cell | 8.12e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 2.96e-08 | 78 |
cell layer | 3.96e-08 | 309 |
trunk | 4.42e-08 | 199 |
epithelium | 9.57e-08 | 306 |
segment of respiratory tract | 9.72e-08 | 47 |
nephron epithelium | 1.28e-07 | 15 |
renal tubule | 1.28e-07 | 15 |
nephron tubule | 1.28e-07 | 15 |
nephron | 1.28e-07 | 15 |
uriniferous tubule | 1.28e-07 | 15 |
nephrogenic mesenchyme | 1.28e-07 | 15 |
respiratory primordium | 2.10e-07 | 38 |
endoderm of foregut | 2.10e-07 | 38 |
multilaminar epithelium | 4.91e-07 | 83 |
parenchyma | 6.59e-07 | 15 |
cortex of kidney | 8.12e-07 | 12 |
renal parenchyma | 8.12e-07 | 12 |
larynx | 8.43e-07 | 9 |
urinary system structure | 9.41e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 4.12e-17 | 239 |
cancer | 1.15e-16 | 235 |
cell type cancer | 2.41e-10 | 143 |
carcinoma | 1.13e-08 | 106 |
organ system cancer | 5.82e-08 | 137 |