FFCP PHASE1:Hg19::chr1:156642431..156642448,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:156642431..156642448,-
|short_description=p5@NES
|description=CAGE_peak_5_at_NES_5end
|association_with_transcript=-260bp_to_AB073350_5end
|EntrezGene=107...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10763 | |EntrezGene=10763 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=7756 | |HGNC=7756 | ||
|TSSclassifier=strong | |||
|UniProt=P48681 | |UniProt=P48681 | ||
|association_with_transcript=-260bp_to_AB073350_5end | |||
|cluster_id=chr1:156642431..156642448,- | |||
|coexpression_cluster_id=C797 | |||
|description=CAGE_peak_5_at_NES_5end | |||
|id=chr1:156642431..156642448,- | |||
|ontology_enrichment_celltype=CL:0000055!1.52e-09!180;CL:0000071!1.20e-08!18;CL:0002546!1.20e-08!18;CL:0000115!1.68e-08!35;CL:0002139!2.23e-08!24 | |||
|ontology_enrichment_celltype_v019=CL:0000115;1.79e-13;36!CL:0000071;1.65e-10;18!CL:0002262;3.55e-10;2!CL:1000398;3.55e-10;2!CL:0002188;3.23e-08;5!CL:1000413;1.03e-07;9!CL:0002139;1.20e-07;24!CL:0002078;7.74e-07;45 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,1.74e-14,36;CL:0002078,4.40e-11,45;CL:0000071,2.15e-10,18;CL:0002546,2.15e-10,18;CL:0002262,4.08e-10,2;CL:1000398,4.08e-10,2;CL:0002188,1.89e-08,5;CL:0000213,4.74e-08,58;CL:0000215,4.74e-08,58;CL:1000413,1.08e-07,9;CL:0002139,1.46e-07,24;CL:0002605,9.74e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002546;1.65e-10;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!6.63e-13!312;UBERON:0000483!6.06e-12!309;UBERON:0004111!1.25e-11!241;UBERON:0000477!1.42e-11!286;UBERON:0000025!4.52e-11!194;UBERON:0004872!3.59e-09!84;UBERON:0001986!1.20e-08!18;UBERON:0004638!1.20e-08!18;UBERON:0004852!1.20e-08!18;UBERON:0000480!1.89e-08!626;UBERON:0000468!1.89e-08!659;UBERON:0003914!3.02e-08!118;UBERON:0000055!3.43e-08!69;UBERON:0000467!3.43e-08!625;UBERON:0001981!4.42e-08!60;UBERON:0007500!4.42e-08!60;UBERON:0004537!4.42e-08!60;UBERON:0006965!4.42e-08!60;UBERON:0002049!8.64e-08!79;UBERON:0007798!8.64e-08!79;UBERON:0000475!1.85e-07!365;UBERON:0001009!2.20e-07!113;UBERON:0000487!5.32e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.65e-10;18!UBERON:0001986;1.65e-10;18!UBERON:0004852;1.65e-10;18!UBERON:0001281;3.55e-10;2!UBERON:0003497;3.55e-10;2!UBERON:0003909;3.55e-10;2!UBERON:0003835;3.55e-10;2!UBERON:0000487;2.00e-08;22!UBERON:0003915;1.03e-07;9!UBERON:0004700;1.03e-07;9!UBERON:0001917;1.03e-07;9!UBERON:0006914;2.65e-07;25!UBERON:0000353;4.55e-07;15!UBERON:0001280;4.85e-07;3!UBERON:0004647;4.85e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,2.15e-10,18;UBERON:0001986,2.15e-10,18;UBERON:0004852,2.15e-10,18;UBERON:0001281,4.08e-10,2;UBERON:0003497,4.08e-10,2;UBERON:0003909,4.08e-10,2;UBERON:0003835,4.08e-10,2;UBERON:0000487,2.47e-08,22;UBERON:0007500,1.02e-07,59;UBERON:0001981,1.02e-07,59;UBERON:0004537,1.02e-07,59;UBERON:0006965,1.02e-07,59;UBERON:0003915,1.08e-07,9;UBERON:0004700,1.08e-07,9;UBERON:0001917,1.08e-07,9;UBERON:0006914,3.18e-07,25;UBERON:0000353,3.57e-07,15;UBERON:0001280,5.32e-07,3;UBERON:0004647,5.32e-07,3;UBERON:0005171,5.32e-07,3;UBERON:0004872,7.53e-07,83 | |||
|phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0.246242116153576,0,0.626909442956176,1.43117993565528,2.73748850145768,0.87879847716362,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.12786256184353,0,0,0,0.795285947051099,0,0.567208902984407,0.665188192387692,0.263504357079378,0.0654895377488563,0,0,0,0,0,0,0,0,0.198762407366705,0,1.04142150482278,0.56530794192401,1.67799774483962,3.85165258716094,1.46296476575767,0.775250277507987,0,0,0.402829317109147,0.760272105718513,1.22031028774085,0.735326160691737,0.81014194788176,0.267899184852239,0.44905874525234,1.12611480483322,0,0,1.28241220751285,0,0,0,0,0.25326102332916,0,0.860509862246441,0.354668382198357,0.560677600142307,0,0,0,0.404132016209064,1.14423332179421,0,0,0.234321431833797,0,0.570471821544449,0.597794722207204,0.117434498643765,0.323745888736263,0.421352420106746,0,0.737005903870608,0.206651562351531,0,0.494533858557114,0,0,0.505008341862199,1.50142223846357,0,0.877955241761676,0.30648779579902,0,0.113432183160021,0.538168907066586,0.213557388818567,0.423863802319124,0.600182192168805,0.412210116953756,0,0.18611685633159,0.168776332241266,0.0974370051611986,0.252433774244115,0.184099797284599,0.323292113637624,0,0.503760491138201,0,0,0,0,0.121973706129595,0.662648841607426,1.2781333715647,1.14027160516907,0,1.82488679537915,0,0.643240938192885,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,2.21446636387394,4.20725321410337,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0.325808305310325,0,1.44331342025273,0.927443239800615,0.117408694235822,0.577465791044295,0,0.761016608938393,0,0,0.246217006087397,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126995788584338,0,0,0,0.616964956219941,0,0.285826432630578,0.336393253036082,0.87192013766656,0.5867062865676,0.129271715757778,0,0,0.797814349754612,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579125226670317,0.61642896765115,0.179060963239896,0,0,0,0,2.7950408664471,0,0.773288812777695,0.167516265334349,1.91381625495949,0,0,0,0,0,0,0.623912584592421,0.892144943985809,0,0.117141414992713,0,2.27407504055985,0,0,0.737476674166813,1.30325421702124,0,1.71571711905428,0,0,0,0,0,0,0.248107807818777,0,0,0,0,0,0,1.23367755042124,0,0.410635780069046,0.519254429183621,0.464841513839837,0.120859449591622,0,0,0.114814448164607,0.182091168006717,0.917870904715969,0,0.15403067420883,0,0,0,2.27466768141793,1.87103075804167,0.431831832204279,1.54227252690289,0,0.501689773854853,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0.48335359146061,0.616194468458578,0.307007349452259,0.551346289938122,0.322260734604821,0.870100163485371,0.340906509664404,1.69160867728801,0,0,0,0,0,0.62962469366128,0,0,0,0,0.18532421910392,0.286249773483982,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05650146756755,0.409499734223957,0.282810863907425,1.13008116620243,0,0,0.438450885253763,0,0.655894752046633,0,0.30982349809975,0.845086807596724,0,0,0,0.354761064070598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.427296284509893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0.796991953004279,0,0,2.55671706255387,0,0.311039587661807,0.0898683511473268,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0.361789315876224,0,0.221158519862449,1.18219047581419,0,0,0,0.0769502585037971,0,0,0,0,0,0.274792780205587,0,0,0,0,0,0,0.167821586975843,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0.468528891450678,0,0,0,0.394584402849391,0,0.30607276163049,0,0,0,0,0,0,0,0,0.554698692052555,0,0,0,0.698906672968121,0,0,0,0,0.0969890164884194,0,0.677942222341597,0,0,0.0633107959558787,0,0,0,0.19980960958213,0,0,0,0.288109595976299,0,0,0.271808412147228,0.523014231561666,0,0,0,0.136905378891993,0,0,0,0.279282401272254,2.06244381610515,0.717873024576814,0.599037001496973,1.71690419254628,0.223171457441873,0.335917362433631,0,0,0.0787831823072236,0.164831716762333,0.337017719270924,0.0984274815147488,0,0,0.408610218334727,0,0.550157746388935,2.49264202817511,0,0,0,0,0.157611414598396,0.104909176269996,0.105600336519406,0,0,4.2881719582402,0.662091970365432,0,0,0.864221491201268,0.326587360109409,0,0,0,0.113312091520126,0.146552233678082,0,0.129282956361551,0.13223260174269,0,0,0.106787412567695,0,0.828478110694391,0.992332043623902,0.395223263795889,0,0,0,0,0,0,0,0,0.366078794705889,0.250381861413,1.14681839138014,0.221858103073705,0.18628920882415,0,0,0.151649117541648,0.570930667089935,1.17632909849086,0,0,0,0.233713309847224,0,0,0.251567901752575,0.889811221596536,0,0.302461847526478,0,0.443565449968902,0.318593534327405,0,0,0.829412415681711,0.265841714557995,2.08698024724694,0,0.380805212168795,0,0.181848659202559,0.107410557042488,0,0.398095888698616,18.4012771745051,0,0.336749488765919,1.26184898228651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.607719912354764,0.138258436151731,0,0,0,0,0,0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| ||
|short_description=p5@NES | |||
}} | }} |
Latest revision as of 17:08, 17 September 2015
Short description: | p5@NES |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_NES_5end |
Coexpression cluster: | C797_mesenchymal_skeletal_Endothelial_Pericytes_Skeletal_Astrocyte_left |
Association with transcript: | -260bp_to_AB073350_5end |
EntrezGene: | NES |
HGNC: | 7756 |
UniProt: | P48681 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 1.74e-14 | 36 |
meso-epithelial cell | 4.40e-11 | 45 |
blood vessel endothelial cell | 2.15e-10 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.15e-10 | 18 |
endothelial cell of sinusoid | 4.08e-10 | 2 |
endothelial cell of hepatic sinusoid | 4.08e-10 | 2 |
glomerular endothelial cell | 1.89e-08 | 5 |
lining cell | 4.74e-08 | 58 |
barrier cell | 4.74e-08 | 58 |
endothelial cell of artery | 1.08e-07 | 9 |
endothelial cell of vascular tree | 1.46e-07 | 24 |
astrocyte of the cerebral cortex | 9.74e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 2.15e-10 | 18 |
endothelium | 2.15e-10 | 18 |
cardiovascular system endothelium | 2.15e-10 | 18 |
hepatic sinusoid | 4.08e-10 | 2 |
abdomen blood vessel | 4.08e-10 | 2 |
sinusoid | 4.08e-10 | 2 |
abdominal segment blood vessel | 4.08e-10 | 2 |
simple squamous epithelium | 2.47e-08 | 22 |
epithelial tube open at both ends | 1.02e-07 | 59 |
blood vessel | 1.02e-07 | 59 |
blood vasculature | 1.02e-07 | 59 |
vascular cord | 1.02e-07 | 59 |
endothelial tube | 1.08e-07 | 9 |
arterial system endothelium | 1.08e-07 | 9 |
endothelium of artery | 1.08e-07 | 9 |
squamous epithelium | 3.18e-07 | 25 |
parenchyma | 3.57e-07 | 15 |
liver parenchyma | 5.32e-07 | 3 |
liver lobule | 5.32e-07 | 3 |
hepatic duct | 5.32e-07 | 3 |
splanchnic layer of lateral plate mesoderm | 7.53e-07 | 83 |