FFCP PHASE1:Hg19::chr6:22146535..22146575,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=401237 | |EntrezGene=401237 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=28245 | |HGNC=28245 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-307bp_to_uc003ndn.2_5end | |association_with_transcript=-307bp_to_uc003ndn.2_5end | ||
|cluster_id=chr6:22146535..22146575,+ | |||
|description=CAGE_peak_2_at_LINC00340_5end | |description=CAGE_peak_2_at_LINC00340_5end | ||
|id=chr6:22146535..22146575,+ | |id=chr6:22146535..22146575,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
| | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.28e-18;82!UBERON:0006241;1.35e-07;3!UBERON:0003057;1.35e-07;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0003528;1.13e-45;34!UBERON:0002020;1.13e-45;34!UBERON:0001893;1.45e-45;34!UBERON:0001869;2.00e-45;32!UBERON:0002791;2.15e-45;32!UBERON:0002619;2.64e-44;22!UBERON:0002780;1.27e-42;41!UBERON:0001890;1.27e-42;41!UBERON:0001950;1.43e-40;20!UBERON:0000956;2.62e-38;25!UBERON:0000203;2.62e-38;25!UBERON:0000073;1.28e-36;53!UBERON:0002616;1.28e-36;53!UBERON:0000955;4.47e-27;68!UBERON:0001017;1.14e-25;75!UBERON:0001016;1.83e-22;83!UBERON:0002420;3.18e-17;9!UBERON:0007245;3.18e-17;9!UBERON:0010009;3.18e-17;9!UBERON:0010011;3.18e-17;9!UBERON:0000454;3.18e-17;9!UBERON:0000125;3.72e-17;9!UBERON:0002308;3.72e-17;9!UBERON:0001871;5.56e-14;6!UBERON:0009663;1.02e-13;7!UBERON:0000200;1.07e-12;6!UBERON:0002298;1.11e-11;6!UBERON:0002021;1.89e-11;5!UBERON:0001872;4.37e-11;5!UBERON:0004732;9.66e-11;13!UBERON:0011216;1.13e-10;132!UBERON:0000349;2.51e-10;5!UBERON:0007023;4.11e-10;114!UBERON:0004733;4.12e-09;12!UBERON:0002028;4.12e-09;12!UBERON:0002784;6.05e-09;4!UBERON:0000369;2.02e-08;4!UBERON:0002435;2.02e-08;4!UBERON:0000204;2.02e-08;4!UBERON:0000922;1.23e-07;49!UBERON:0002240;1.35e-07;3!UBERON:0005174;1.35e-07;3!UBERON:0001137;1.35e-07;3!UBERON:0001894;1.74e-07;7!UBERON:0001870;4.28e-07;3!UBERON:0005383;6.35e-07;3!UBERON:0005382;6.35e-07;3 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.48e-40!57;UBERON:0005068!1.48e-40!57;UBERON:0006241!1.48e-40!57;UBERON:0007135!1.48e-40!57;UBERON:0000073!1.60e-38!94;UBERON:0001016!1.60e-38!94;UBERON:0005743!4.46e-38!86;UBERON:0001017!2.29e-35!82;UBERON:0002780!6.28e-34!41;UBERON:0001890!6.28e-34!41;UBERON:0006240!6.28e-34!41;UBERON:0003080!9.41e-33!42;UBERON:0002616!1.68e-32!59;UBERON:0000955!5.36e-32!69;UBERON:0006238!5.36e-32!69;UBERON:0002020!2.10e-31!34;UBERON:0003528!2.10e-31!34;UBERON:0001893!2.63e-31!34;UBERON:0002791!2.34e-30!33;UBERON:0001869!2.05e-29!32;UBERON:0003075!1.22e-28!86;UBERON:0007284!1.22e-28!86;UBERON:0002346!1.27e-27!90;UBERON:0007023!1.43e-25!115;UBERON:0002619!4.63e-25!22;UBERON:0003056!1.16e-24!61;UBERON:0000153!4.85e-24!129;UBERON:0007811!4.85e-24!129;UBERON:0001950!5.28e-23!20;UBERON:0000956!1.21e-22!25;UBERON:0000203!1.21e-22!25;UBERON:0000033!2.26e-22!123;UBERON:0004121!2.64e-21!169;UBERON:0000924!5.47e-21!173;UBERON:0006601!5.47e-21!173;UBERON:0002420!3.12e-10!9;UBERON:0007245!3.12e-10!9;UBERON:0010009!3.12e-10!9;UBERON:0010011!3.12e-10!9;UBERON:0000454!3.12e-10!9;UBERON:0002308!3.48e-10!9;UBERON:0000125!3.48e-10!9;UBERON:0000475!1.15e-09!365;UBERON:0001871!2.00e-09!7;UBERON:0003076!5.74e-09!15;UBERON:0003057!5.74e-09!15;UBERON:0009663!2.72e-08!7;UBERON:0000025!3.00e-08!194;UBERON:0004111!7.20e-08!241;UBERON:0000200!1.08e-07!6;UBERON:0000483!2.65e-07!309;UBERON:0000064!4.18e-07!219;UBERON:0004732!4.74e-07!13;UBERON:0000119!5.24e-07!312;UBERON:0002021!5.45e-07!5;UBERON:0002298!7.94e-07!8;UBERON:0000468!8.49e-07!659;UBERON:0001872!8.61e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;1.13e-45;34!UBERON:0002020;1.13e-45;34!UBERON:0001893;1.45e-45;34!UBERON:0001869;2.00e-45;32!UBERON:0002791;2.15e-45;32!UBERON:0002619;2.64e-44;22!UBERON:0002780;1.27e-42;41!UBERON:0001890;1.27e-42;41!UBERON:0001950;1.43e-40;20!UBERON:0000956;2.62e-38;25!UBERON:0000203;2.62e-38;25!UBERON:0000073;1.28e-36;53!UBERON:0002616;1.28e-36;53!UBERON:0000955;4.47e-27;68!UBERON:0001017;1.14e-25;75!UBERON:0001016;1.83e-22;83!UBERON:0002420;3.18e-17;9!UBERON:0007245;3.18e-17;9!UBERON:0010009;3.18e-17;9!UBERON:0010011;3.18e-17;9!UBERON:0000454;3.18e-17;9!UBERON:0000125;3.72e-17;9!UBERON:0002308;3.72e-17;9!UBERON:0001871;5.56e-14;6!UBERON:0009663;1.02e-13;7!UBERON:0000200;1.07e-12;6!UBERON:0002298;1.11e-11;6!UBERON:0002021;1.89e-11;5!UBERON:0001872;4.37e-11;5!UBERON:0004732;9.66e-11;13!UBERON:0011216;1.13e-10;132!UBERON:0000349;2.51e-10;5!UBERON:0007023;4.11e-10;114!UBERON:0004733;4.12e-09;12!UBERON:0002028;4.12e-09;12!UBERON:0002784;6.05e-09;4!UBERON:0000369;2.02e-08;4!UBERON:0002435;2.02e-08;4!UBERON:0000204;2.02e-08;4!UBERON:0000922;1.23e-07;49!UBERON:0002240;1.35e-07;3!UBERON:0005174;1.35e-07;3!UBERON:0001137;1.35e-07;3!UBERON:0001894;1.74e-07;7!UBERON:0001870;4.28e-07;3!UBERON:0005383;6.35e-07;3!UBERON:0005382;6.35e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,5.22e-73,56;UBERON:0005068,5.22e-73,56;UBERON:0006241,5.22e-73,56;UBERON:0007135,5.22e-73,56;UBERON:0000073,5.78e-67,53;UBERON:0002616,5.78e-67,53;UBERON:0002780,5.24e-60,41;UBERON:0001890,5.24e-60,41;UBERON:0003080,5.24e-60,41;UBERON:0006240,5.24e-60,41;UBERON:0001016,1.11e-59,89;UBERON:0000955,8.69e-59,68;UBERON:0006238,8.69e-59,68;UBERON:0001017,4.83e-57,81;UBERON:0003528,2.20e-54,34;UBERON:0002020,2.20e-54,34;UBERON:0001893,3.31e-54,34;UBERON:0002791,8.19e-51,32;UBERON:0001869,9.49e-51,32;UBERON:0003075,6.52e-50,82;UBERON:0007284,6.52e-50,82;UBERON:0002346,6.97e-49,86;UBERON:0002619,2.10e-44,22;UBERON:0003056,1.88e-41,61;UBERON:0010371,2.77e-41,104;UBERON:0001950,1.22e-40,20;UBERON:0000956,2.15e-38,25;UBERON:0000203,2.15e-38,25;UBERON:0004121,1.26e-35,171;UBERON:0000924,1.26e-35,171;UBERON:0006601,1.26e-35,171;UBERON:0007023,4.66e-30,114;UBERON:0010314,1.22e-29,132;UBERON:0011216,4.37e-27,223;UBERON:0002420,2.55e-17,9;UBERON:0007245,2.55e-17,9;UBERON:0010009,2.55e-17,9;UBERON:0010011,2.55e-17,9;UBERON:0000454,2.55e-17,9;UBERON:0000125,3.10e-17,9;UBERON:0002308,3.10e-17,9;UBERON:0000025,1.93e-14,192;UBERON:0003076,4.48e-14,15;UBERON:0003057,4.48e-14,15;UBERON:0001871,4.80e-14,6;UBERON:0009663,8.51e-14,7;UBERON:0000200,1.03e-12,6;UBERON:0004111,4.76e-12,240;UBERON:0002298,1.12e-11,6;UBERON:0002021,1.93e-11,5;UBERON:0001872,4.42e-11,5;UBERON:0004732,1.12e-10,13;UBERON:0000349,2.08e-10,5;UBERON:0000483,5.65e-10,306;UBERON:0000119,9.98e-10,309;UBERON:0004733,4.75e-09,12;UBERON:0002028,4.75e-09,12;UBERON:0007277,4.75e-09,12;UBERON:0002784,5.87e-09,4;UBERON:0000369,1.66e-08,4;UBERON:0002435,1.66e-08,4;UBERON:0000204,1.66e-08,4;UBERON:0010082,1.66e-08,4;UBERON:0002240,1.41e-07,3;UBERON:0005174,1.41e-07,3;UBERON:0001137,1.41e-07,3;UBERON:0001894,1.67e-07,7;UBERON:0006222,1.67e-07,7;UBERON:0001870,4.15e-07,3;UBERON:0005383,5.63e-07,3;UBERON:0005382,5.63e-07,3 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,1.24430121722827,0,0,0,0,0,0.238490624305342,0.571994910780128,0.371457501329565,0,0,0,0,0,0,0.208994966536811,0.258416759169329,1.42306505074684,3.3472061276467,1.61131726843659,0,1.22031028774085,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.56400857184616,3.4617370098998,0,0,0,0,0,0.877955241761676,0,3.15499923703853,0,0,0.427114777637135,0.423863802319124,0,0,0,0,0.168776332241266,0.0974370051611986,0,0.184099797284599,0,0,0.10075209822764,0.169560592310488,0,0,0,0.121973706129595,0,0,0.207322110030741,0.252320850875628,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,0,0,0,0,2.6487785964879,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0.721832238805369,0,0.951270761172991,0,0,0,0.234004265139238,0,0,0,0,0,0,0,0.492663237895943,0.088048434013226,0.829312462163088,0.432359860250884,0.25248486685276,1.71444314588856,1.14596527667483,0,0,1.64523988325318,0,0.285826432630578,0,0,0,0,0,0,1.06375246633948,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0.958499421966331,8.04033550838797,0,0.723906533337896,0.205476322550383,1.61154866915906,0,0,0,0,0,0,0.773288812777695,0.502548796003046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0.343143423810856,0,0,0,0,0,0,0,0.306923946576125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182091168006717,0,0,0,0,0,0,0,0,0.431831832204279,0,0.270946437543853,0,0,0,0,0,0,0.256450125116389,0.656029291399411,0.976135183992909,0,3.57120912791539,3.38288949674411,0,0,0,0.386682873168488,0,0,0,0.107420244868274,0,0,2.04773681987496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.853702120180969,0.797131363644112,0.199579371432817,0.5745161103971,0,0,3.36956613736151,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0,0,0,0,0,0,8.94732882989668,6.33012373847307,0,0,0,0.19924798825107,0,0,0.715880777515084,0,0,0,0,0,0.0986434056369336,0,0,9.69332746095218,5.10224539890182,23.9536557601433,0,0,0,0,0,0,0.344743373241465,0,0.347249989866585,17.7148277162768,5.66803261539417,3.05163472634166,0.331737779793674,1.18219047581419,4.8264787373874,0,0,0.230850775511391,0.341826167541004,0,0,0,0,0.457987967009312,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0,2.4441205797345,0,0,0.104421949505455,5.05508497355078,5.61804353109152,7.26219781748551,0,0,0,0,2.41981432097328,8.87611008728421,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.00540296419651,0,0.19871461170299,6.52101198345551,0,0,0.426905989478705,0,0,1.25990255782507,0,0,0,0,0,0,0,2.02265412931063,10.8075651967762,5.47621515567972,0,0,0,0,0,0,0,0,0,0.53746777989381,0.360299883542404,0,0,0,0,0,0.0846733320657845,13.5189047267582,6.6739668994672,0.160753148465019,0.137539436597234,0,0,0,8.80868571541358,0,0.315222829196793,1.41627387964495,0,0,0,0.714695326373367,0,3.051222451857,0,0,0.326587360109409,0,0,0,0.113312091520126,0.146552233678082,0,9.30837285803164,4.62814106099415,0,0,0.106787412567695,0.628817220398664,0,0,0,0,0,0,0,0.306345576763462,0.327872630709804,14.763085047522,10.6328181596038,16.473545761765,8.51298328804199,7.45431954397093,4.32623300993724,5.34029065295898,0,0,2.57803499820801,1.42732666772484,0,0,0.579684114443301,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0.414706207840855,0,0,0,0,0,0,0,0,0,0,0.343395705182793,0,3.78554694685953,0,0,0,0,0,0,0,0,0,0,0,0,0.512483037175893,0,0,8.9867983498625,0.389720617678777,0,0.163565394255844,0.327609848846413,0,0,0,0,0,0,0,0,0,24.4278249189975,6.03818943821418,0,21.4050890856347,0,1.48802444071178,0,0,0,0.0788617450012534,0.80057074828547,0.705351887381368,0,3.59683660540173,26.9223495018611,10.0569331206005,15.1786109538159,33.2734639012668,6.36246722670805,9.36558744664736,12.8492478233239,0,0,0,0,0,0,3.1826595538604,0.150420656698515,0.80682027481408,0,0,0,0,6.21345778489231,16.4026400708908,11.7811474005675,6.21474939900287,16.4092442705466,0,0,0,0,6.42842203053944,9.75222794434589,0,0,0.354809480650555,0,0.171488009437418,5.30163917219287,7.2350050919134,0,0,0.078493092850514,5.81327682689207,0,3.65263488203798,0,0.9555033757741,4.28859265059938,0,0,1.73858272302579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205325613712494,10.4383298820438,4.37139893753226,0,0,7.72980590054196,1.1294608203896,0,0.301925687133347,0.231522474323834,2.62271472604749,0.470317296361523,0,1.41405928260976,16.2936027705405,8.6143456094855,28.7405894756712,0.169927114687817,0,0.0644578879735772,0,0,0,0,0.730336388246517,0,7.02363957442111,1.26217249754548,7.13910647004604,9.16336449714793,1.5870805215462,0,0,0,0,0,0,0,0.26721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| ||
|short_description=p2@LINC00340 | |short_description=p2@LINC00340 | ||
}} | }} |
Latest revision as of 04:30, 17 September 2015
Short description: | p2@LINC00340 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LINC00340_5end |
Coexpression cluster: | NA |
Association with transcript: | -307bp_to_uc003ndn.2_5end |
EntrezGene: | LINC00340 |
HGNC: | 28245 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data