FFCP PHASE1:Hg19::chr1:158323755..158323764,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=913 | |EntrezGene=913 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1638 | |HGNC=1638 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-14bp_to_ENST00000368154,ENST00000368155,ENST00000368156,ENST00000368157,ENST00000368160,ENST00000368161_5end | |association_with_transcript=-14bp_to_ENST00000368154,ENST00000368155,ENST00000368156,ENST00000368157,ENST00000368160,ENST00000368161_5end | ||
|cluster_id=chr1:158323755..158323764,+ | |||
|coexpression_cluster_id=C28 | |coexpression_cluster_id=C28 | ||
|description=CAGE_peak_5_at_CD1E_5end | |description=CAGE_peak_5_at_CD1E_5end | ||
|id=chr1:158323755..158323764,+ | |id=chr1:158323755..158323764,+ | ||
|ontology_enrichment_celltype=CL:0000840;3.48e-74;5!CL:0000990;1.33e-49;8!CL:0000451;1.19e-40;10!CL:0001014;9.84e-37;2!CL:0001016;9.84e-37;2!CL:0000453;2.34e-15;5 | |ontology_enrichment_celltype=CL:0000990!1.24e-41!8;CL:0000451!6.02e-34!10;CL:0000840!6.67e-33!5;CL:0001029!6.67e-33!5;CL:0000453!6.10e-25!5;CL:0001014!6.75e-17!2;CL:0001016!6.75e-17!2;CL:0000842!4.66e-11!3;CL:0000738!1.53e-09!140;CL:0000224!1.64e-08!4;CL:0000037!2.00e-08!172;CL:0000566!2.00e-08!172;CL:0000988!8.38e-08!182 | ||
| | |ontology_enrichment_celltype_v019=CL:0000840;3.48e-74;5!CL:0000990;1.33e-49;8!CL:0000451;1.19e-40;10!CL:0001014;9.84e-37;2!CL:0001016;9.84e-37;2!CL:0000453;2.34e-15;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0000840,3.23e-74,5;CL:0001029,3.23e-74,5;CL:0000990,1.27e-49,8;CL:0000451,1.14e-40,10;CL:0001014,9.84e-37,2;CL:0001016,9.84e-37,2;CL:0000453,2.34e-15,5;CL:0000738,6.24e-08,136;CL:0002009,2.56e-07,61;CL:0002031,5.67e-07,120 | |||
|ontology_enrichment_development_v019=UBERON:0006965;2.99e-10;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0002370;1.89e-37;2!UBERON:0005058;1.89e-37;2!UBERON:0009113;1.89e-37;2!UBERON:0004177;1.21e-15;5!UBERON:0005057;1.21e-15;5 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003408!6.59e-13!10;UBERON:0002193!8.59e-11!112;UBERON:0004177!1.07e-10!7;UBERON:0002390!2.56e-10!102;UBERON:0003061!2.56e-10!102;UBERON:0001736!3.88e-09!1;UBERON:0006298!3.88e-09!1;UBERON:0002171!4.54e-09!1;UBERON:0006518!4.54e-09!1;UBERON:0008949!4.54e-09!1;UBERON:0000101!4.54e-09!1;UBERON:0002167!4.54e-09!1;UBERON:0002370!4.73e-09!4;UBERON:0005058!4.73e-09!4;UBERON:0009113!4.73e-09!4;UBERON:0003295!4.73e-09!4;UBERON:0005562!4.73e-09!4;UBERON:0001154!5.31e-09!1;UBERON:0001153!5.31e-09!1;UBERON:0002372!7.85e-09!1;UBERON:0001961!7.85e-09!1;UBERON:0001744!7.85e-09!1;UBERON:0001735!7.85e-09!1;UBERON:0000974!1.09e-07!10;UBERON:0001042!1.20e-07!10;UBERON:0009145!1.20e-07!10;UBERON:0002405!1.75e-07!115;UBERON:0006562!5.42e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.89e-37;2!UBERON:0005058;1.89e-37;2!UBERON:0009113;1.89e-37;2!UBERON:0004177;1.21e-15;5!UBERON:0005057;1.21e-15;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,2.71e-19,4;UBERON:0005058,2.71e-19,4;UBERON:0009113,2.71e-19,4;UBERON:0003295,2.71e-19,4;UBERON:0005562,2.71e-19,4;UBERON:0003351,3.34e-13,6;UBERON:0004177,1.87e-11,7;UBERON:0005057,1.87e-11,7;UBERON:0002405,4.29e-09,93;UBERON:0002390,1.29e-08,98;UBERON:0003061,1.29e-08,98;UBERON:0000974,2.72e-08,10;UBERON:0003408,2.72e-08,10;UBERON:0001042,2.72e-08,10;UBERON:0009145,2.72e-08,10;UBERON:0002193,8.68e-08,108;UBERON:0006562,1.28e-07,11;UBERON:0009722,1.28e-07,11;UBERON:0007690,1.28e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.62273696827342,3.48259474598534,4.38761269712255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32438929824395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.0700282104972,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.3947936752326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.59958226482401,3.0952078182318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193373663920732,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,42.757858311436,16.7601728598816,0,0,0,0,0,0.202056159043763,0,0,0,0,0,0,0,0,0,0,2.01273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.62273696827342,3.48259474598534,4.38761269712255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32438929824395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.0700282104972,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.3947936752326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.59958226482401,3.0952078182318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193373663920732,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,42.757858311436,16.7601728598816,0,0,0,0,0,0.202056159043763,0,0,0,0,0,0,0,0,0,0,2.01273793591026,0 | ||
|short_description=p5@CD1E | |short_description=p5@CD1E | ||
}} | }} |
Latest revision as of 21:01, 17 September 2015
Short description: | p5@CD1E |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_CD1E_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | -14bp_to_ENST00000368154, ENST00000368155, ENST00000368156, ENST00000368157, ENST00000368160, ENST00000368161_5end |
EntrezGene: | CD1E |
HGNC: | 1638 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
immature conventional dendritic cell | 3.23e-74 | 5 |
common dendritic progenitor | 3.23e-74 | 5 |
conventional dendritic cell | 1.27e-49 | 8 |
dendritic cell | 1.14e-40 | 10 |
CD1a-positive Langerhans cell | 9.84e-37 | 2 |
immature CD1a-positive Langerhans cell | 9.84e-37 | 2 |
Langerhans cell | 2.34e-15 | 5 |
leukocyte | 6.24e-08 | 136 |
macrophage dendritic cell progenitor | 2.56e-07 | 61 |
hematopoietic lineage restricted progenitor cell | 5.67e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
thymus | 2.71e-19 | 4 |
hemolymphoid system gland | 2.71e-19 | 4 |
thymic region | 2.71e-19 | 4 |
pharyngeal gland | 2.71e-19 | 4 |
thymus primordium | 2.71e-19 | 4 |
pharyngeal epithelium | 3.34e-13 | 6 |
hemopoietic organ | 1.87e-11 | 7 |
immune organ | 1.87e-11 | 7 |
immune system | 4.29e-09 | 93 |
hematopoietic system | 1.29e-08 | 98 |
blood island | 1.29e-08 | 98 |
neck | 2.72e-08 | 10 |
gland of gut | 2.72e-08 | 10 |
chordate pharynx | 2.72e-08 | 10 |
pharyngeal region of foregut | 2.72e-08 | 10 |
hemolymphoid system | 8.68e-08 | 108 |
pharynx | 1.28e-07 | 11 |
entire pharyngeal arch endoderm | 1.28e-07 | 11 |
early pharyngeal endoderm | 1.28e-07 | 11 |