FFCP PHASE1:Hg19::chr1:151798601..151798617,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:151798601..151798617,-
|short_description=p3@RORC
|description=CAGE_peak_3_at_RORC_5end
|association_with_transcript=-34bp_to_ENST00000356728_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6097 | |EntrezGene=6097 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10260 | |HGNC=10260 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-34bp_to_ENST00000356728_5end | |||
|cluster_id=chr1:151798601..151798617,- | |||
|coexpression_cluster_id=C28 | |||
|description=CAGE_peak_3_at_RORC_5end | |||
|id=chr1:151798601..151798617,- | |||
|ontology_enrichment_celltype=CL:0000084!1.81e-28!25;CL:0000827!1.81e-28!25;CL:0000791!1.66e-24!18;CL:0000789!1.66e-24!18;CL:0002420!1.66e-24!18;CL:0002419!1.66e-24!18;CL:0000790!1.66e-24!18;CL:0000625!2.50e-17!11;CL:0000838!4.31e-14!52;CL:0000542!1.01e-13!53;CL:0000051!1.01e-13!53;CL:0000738!6.66e-11!140;CL:0000624!1.82e-10!6;CL:0002087!3.44e-10!119;CL:0002031!7.56e-08!124;CL:0000037!2.37e-07!172;CL:0000566!2.37e-07!172 | |||
|ontology_enrichment_celltype_v019=CL:0000084;6.46e-27;25!CL:0000791;4.79e-24;18!CL:0000789;4.79e-24;18!CL:0002419;4.79e-24;18!CL:0000625;6.74e-16;11!CL:0000771;1.86e-15;2!CL:0000624;2.61e-11;6!CL:0000895;7.84e-09;1!CL:0000542;1.59e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,8.46e-27,25;CL:0000827,8.46e-27,25;CL:0000791,6.35e-24,18;CL:0000789,6.35e-24,18;CL:0002420,6.35e-24,18;CL:0002419,6.35e-24,18;CL:0000790,6.35e-24,18;CL:0000625,8.29e-16,11;CL:0000771,1.67e-15,2;CL:0000838,4.91e-12,52;CL:0000542,8.89e-12,53;CL:0000051,8.89e-12,53;CL:0000624,2.85e-11,6;CL:0000810,8.78e-09,1;CL:0000895,8.78e-09,1;CL:0002436,8.78e-09,1;CL:0002427,8.78e-09,1;CL:0002428,8.78e-09,1;CL:0002429,8.78e-09,1;CL:0002433,8.78e-09,1;CL:0002431,8.78e-09,1;CL:0002432,8.78e-09,1 | |||
|ontology_enrichment_development_v019=CL:0000790;4.79e-24;18!CL:0002427;7.84e-09;1!CL:0000051;1.59e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.20e-09!15;UBERON:0000179!1.20e-09!15;UBERON:0000463!1.20e-09!15;UBERON:0007023!4.25e-09!115;UBERON:0004177!9.26e-09!7;UBERON:0002370!6.20e-07!4;UBERON:0005058!6.20e-07!4;UBERON:0009113!6.20e-07!4;UBERON:0003295!6.20e-07!4;UBERON:0005562!6.20e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;3.30e-16;2!UBERON:0005058;3.30e-16;2!UBERON:0009113;3.30e-16;2!UBERON:0000178;8.14e-08;15!UBERON:0000179;8.14e-08;15!UBERON:0000463;8.14e-08;15!UBERON:0004177;5.44e-07;5!UBERON:0005057;5.44e-07;5!UBERON:0002390;8.07e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.42e-17,4;UBERON:0005058,1.42e-17,4;UBERON:0009113,1.42e-17,4;UBERON:0003295,1.42e-17,4;UBERON:0005562,1.42e-17,4;UBERON:0003351,6.80e-12,6;UBERON:0004177,2.90e-10,7;UBERON:0005057,2.90e-10,7;UBERON:0000178,8.45e-08,15;UBERON:0000179,8.45e-08,15;UBERON:0000463,8.45e-08,15;UBERON:0000974,2.58e-07,10;UBERON:0003408,2.58e-07,10;UBERON:0001042,2.58e-07,10;UBERON:0009145,2.58e-07,10 | |||
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| ||
|short_description=p3@RORC | |||
}} | }} |
Latest revision as of 01:39, 17 September 2015
Short description: | p3@RORC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RORC_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | -34bp_to_ENST00000356728_5end |
EntrezGene: | RORC |
HGNC: | 10260 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 8.46e-27 | 25 |
pro-T cell | 8.46e-27 | 25 |
mature alpha-beta T cell | 6.35e-24 | 18 |
alpha-beta T cell | 6.35e-24 | 18 |
immature T cell | 6.35e-24 | 18 |
mature T cell | 6.35e-24 | 18 |
immature alpha-beta T cell | 6.35e-24 | 18 |
CD8-positive, alpha-beta T cell | 8.29e-16 | 11 |
eosinophil | 1.67e-15 | 2 |
lymphoid lineage restricted progenitor cell | 4.91e-12 | 52 |
lymphocyte | 8.89e-12 | 53 |
common lymphoid progenitor | 8.89e-12 | 53 |
CD4-positive, alpha-beta T cell | 2.85e-11 | 6 |
CD4-positive, alpha-beta thymocyte | 8.78e-09 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 8.78e-09 | 1 |
mature CD4 single-positive thymocyte | 8.78e-09 | 1 |
resting double-positive thymocyte | 8.78e-09 | 1 |
double-positive blast | 8.78e-09 | 1 |
CD69-positive double-positive thymocyte | 8.78e-09 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 8.78e-09 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 8.78e-09 | 1 |
CD24-positive, CD4 single-positive thymocyte | 8.78e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.42e-17 | 4 |
hemolymphoid system gland | 1.42e-17 | 4 |
thymic region | 1.42e-17 | 4 |
pharyngeal gland | 1.42e-17 | 4 |
thymus primordium | 1.42e-17 | 4 |
pharyngeal epithelium | 6.80e-12 | 6 |
hemopoietic organ | 2.90e-10 | 7 |
immune organ | 2.90e-10 | 7 |
blood | 8.45e-08 | 15 |
haemolymphatic fluid | 8.45e-08 | 15 |
organism substance | 8.45e-08 | 15 |
neck | 2.58e-07 | 10 |
gland of gut | 2.58e-07 | 10 |
chordate pharynx | 2.58e-07 | 10 |
pharyngeal region of foregut | 2.58e-07 | 10 |