FFCP PHASE1:Hg19::chr19:7990260..7990308,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:7990260..7990308,+ | |||
|coexpression_cluster_id=C2506 | |coexpression_cluster_id=C2506 | ||
|description=CAGE_peak_at_chr19:7990260..7990308,+ | |description=CAGE_peak_at_chr19:7990260..7990308,+ | ||
|id=chr19:7990260..7990308,+ | |id=chr19:7990260..7990308,+ | ||
|ontology_enrichment_celltype=CL:0002319;1.95e-13;25!CL:0002321;3.93e-11;15!CL:0000540;1.08e-09;6!CL:0000404;1.08e-09;6!CL:0002322;7.15e-09;5!CL:0000333;7.07e-08;5 | |ontology_enrichment_celltype=CL:0000133!8.58e-10!59;CL:0002319!1.42e-09!25;CL:0000221!3.61e-08!71 | ||
| | |ontology_enrichment_celltype_v019=CL:0002319;1.95e-13;25!CL:0002321;3.93e-11;15!CL:0000540;1.08e-09;6!CL:0000404;1.08e-09;6!CL:0002322;7.15e-09;5!CL:0000333;7.07e-08;5 | ||
|ontology_enrichment_disease=DOID:171;5.34e-07;10 | |ontology_enrichment_celltype_v019_2=CL:0002319,2.97e-13,25;CL:0000047,4.88e-13,8;CL:0000133,7.39e-12,59;CL:0000540,1.12e-09,6;CL:0000031,1.12e-09,6;CL:0000404,1.12e-09,6;CL:0002322,9.95e-09,5;CL:0000221,1.55e-08,72 | ||
|ontology_enrichment_uberon=UBERON:0001869;3.82e-25;32!UBERON:0003528;2.16e-24;34!UBERON:0002020;2.16e-24;34!UBERON:0002791;3.34e-23;32!UBERON:0001893;4.02e-23;34!UBERON:0000956;5.37e-20;25!UBERON:0000203;5.37e-20;25!UBERON:0002619;7.68e-19;22!UBERON:0001950;2.37e-18;20!UBERON:0002780;1.42e-17;41!UBERON:0001890;1.42e-17;41!UBERON:0000955;3.24e-14;68!UBERON:0000073;3.43e-13;53!UBERON:0002616;3.43e-13;53!UBERON:0001017;1.58e-12;75!UBERON:0001016;9.08e-12;83!UBERON:0002420;8.82e-10;9!UBERON:0007245;8.82e-10;9!UBERON:0010009;8.82e-10;9!UBERON:0010011;8.82e-10;9!UBERON:0000454;8.82e-10;9!UBERON:0001871;5.01e-09;6!UBERON:0000369;1.36e-08;4!UBERON:0002435;1.36e-08;4!UBERON:0000204;1.36e-08;4!UBERON:0000013;7.07e-08;5!UBERON:0002410;7.07e-08;5!UBERON:0000200;1.23e-07;6!UBERON:0000125;3.75e-07;9!UBERON:0002308;3.75e-07;9!UBERON:0009663;4.41e-07;7!UBERON:0005383;6.21e-07;3!UBERON:0005382;6.21e-07;3 | |ontology_enrichment_development_v019=CL:0000031;1.08e-09;6!UBERON:0006601;2.69e-07;82!UBERON:0006238;3.38e-07;10!CL:0000133;3.80e-07;59 | ||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:171;5.34e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:171,3.24e-07,10;DOID:169,9.14e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.53e-28!94;UBERON:0001016!1.53e-28!94;UBERON:0005743!6.82e-28!86;UBERON:0001017!8.33e-28!82;UBERON:0000955!2.79e-22!69;UBERON:0006238!2.79e-22!69;UBERON:0002780!4.02e-20!41;UBERON:0001890!4.02e-20!41;UBERON:0006240!4.02e-20!41;UBERON:0002346!5.55e-20!90;UBERON:0001049!7.19e-20!57;UBERON:0005068!7.19e-20!57;UBERON:0006241!7.19e-20!57;UBERON:0007135!7.19e-20!57;UBERON:0003080!3.50e-19!42;UBERON:0003075!3.53e-19!86;UBERON:0007284!3.53e-19!86;UBERON:0001869!3.68e-19!32;UBERON:0002020!5.36e-19!34;UBERON:0003528!5.36e-19!34;UBERON:0001893!9.62e-19!34;UBERON:0002791!4.54e-18!33;UBERON:0002616!4.93e-18!59;UBERON:0003056!2.67e-17!61;UBERON:0000924!6.56e-16!173;UBERON:0006601!6.56e-16!173;UBERON:0004121!3.85e-15!169;UBERON:0000956!1.78e-14!25;UBERON:0000203!1.78e-14!25;UBERON:0002619!3.42e-13!22;UBERON:0000033!5.80e-13!123;UBERON:0001950!5.02e-12!20;UBERON:0000153!2.05e-11!129;UBERON:0007811!2.05e-11!129;UBERON:0000025!2.03e-10!194;UBERON:0004111!4.35e-08!241;UBERON:0000119!3.78e-07!312;UBERON:0000483!4.08e-07!309;UBERON:0000477!6.20e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;3.82e-25;32!UBERON:0003528;2.16e-24;34!UBERON:0002020;2.16e-24;34!UBERON:0002791;3.34e-23;32!UBERON:0001893;4.02e-23;34!UBERON:0000956;5.37e-20;25!UBERON:0000203;5.37e-20;25!UBERON:0002619;7.68e-19;22!UBERON:0001950;2.37e-18;20!UBERON:0002780;1.42e-17;41!UBERON:0001890;1.42e-17;41!UBERON:0000955;3.24e-14;68!UBERON:0000073;3.43e-13;53!UBERON:0002616;3.43e-13;53!UBERON:0001017;1.58e-12;75!UBERON:0001016;9.08e-12;83!UBERON:0002420;8.82e-10;9!UBERON:0007245;8.82e-10;9!UBERON:0010009;8.82e-10;9!UBERON:0010011;8.82e-10;9!UBERON:0000454;8.82e-10;9!UBERON:0001871;5.01e-09;6!UBERON:0000369;1.36e-08;4!UBERON:0002435;1.36e-08;4!UBERON:0000204;1.36e-08;4!UBERON:0000013;7.07e-08;5!UBERON:0002410;7.07e-08;5!UBERON:0000200;1.23e-07;6!UBERON:0000125;3.75e-07;9!UBERON:0002308;3.75e-07;9!UBERON:0009663;4.41e-07;7!UBERON:0005383;6.21e-07;3!UBERON:0005382;6.21e-07;3 | |||
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| ||
|short_description=p@chr19:7990260..7990308,+ | |short_description=p@chr19:7990260..7990308,+ | ||
}} | }} |
Latest revision as of 18:35, 27 July 2015
Short description: | p@chr19:7990260..7990308, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:7990260..7990308, + |
Coexpression cluster: | C2506_putamen_caudate_nucleus_temporal_amygdala_insula_frontal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 2.97e-13 | 25 |
neuronal stem cell | 4.88e-13 | 8 |
neurectodermal cell | 7.39e-12 | 59 |
neuron | 1.12e-09 | 6 |
neuroblast | 1.12e-09 | 6 |
electrically signaling cell | 1.12e-09 | 6 |
embryonic stem cell | 9.95e-09 | 5 |
ectodermal cell | 1.55e-08 | 72 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 3.24e-07 | 10 |
neuroendocrine tumor | 9.14e-07 | 6 |