FFCP PHASE1:Hg19::chr17:48133330..48133349,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3675 | |EntrezGene=3675 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6139 | |HGNC=6139 | ||
|TSSclassifier=strong | |||
|UniProt=P26006,D6R9X8,B4E0H8,B4DDT0 | |UniProt=P26006,D6R9X8,B4E0H8,B4DDT0 | ||
|association_with_transcript=0bp_to_ENST00000007722,ENST00000506401,ENST00000538917,ENST00000544892,NM_002204,NM_005501,uc010dbl.2,uc010dbm.2_5end | |association_with_transcript=0bp_to_ENST00000007722,ENST00000506401,ENST00000538917,ENST00000544892,NM_002204,NM_005501,uc010dbl.2,uc010dbm.2_5end | ||
|cluster_id=chr17:48133330..48133349,+ | |||
|coexpression_cluster_id=C2418 | |coexpression_cluster_id=C2418 | ||
|description=CAGE_peak_2_at_ITGA3_5end | |description=CAGE_peak_2_at_ITGA3_5end | ||
|id=chr17:48133330..48133349,+ | |id=chr17:48133330..48133349,+ | ||
|ontology_enrichment_celltype=CL:1000497;4.67e-10;17!CL:0002518;4.67e-10;17!CL:1000449;1.30e-09;15!CL:0002076;1.30e-09;42!CL:0000077;1.89e-09;19!CL:0002368;2.16e-08;13!CL:1000507;4.62e-08;10!CL:1000494;4.62e-08;10!CL:0002077;9.45e-08;34!CL:0002681;1.08e-07;12!CL:0002584;1.08e-07;12!CL:0000075;1.52e-07;27 | |ontology_enrichment_celltype=CL:0000066!6.86e-36!254;CL:0000220!1.87e-33!246;CL:0002321!6.16e-33!248;CL:0000055!7.04e-15!180;CL:0000222!7.31e-14!119;CL:0000548!9.96e-13!679;CL:0000004!9.96e-13!679;CL:0000255!9.96e-13!679;CL:0002076!1.71e-12!43;CL:0000012!8.28e-12!682;CL:0000076!1.91e-11!62;CL:0000223!5.24e-10!59;CL:1000497!6.52e-10!18;CL:0002518!6.52e-10!18;CL:1000449!1.80e-09!16;CL:0000077!3.18e-09!19;CL:0002077!2.01e-08!33;CL:0002368!3.73e-08!13;CL:0000221!4.17e-08!71;CL:0000183!4.25e-08!59;CL:1000507!5.52e-08!12;CL:1000494!5.52e-08!12;CL:0002681!1.28e-07!13;CL:0002584!1.28e-07!13;CL:0000680!1.73e-07!57;CL:0000056!1.73e-07!57;CL:0000355!1.73e-07!57;CL:0000075!2.21e-07!27 | ||
| | |ontology_enrichment_celltype_v019=CL:1000497;4.67e-10;17!CL:0002518;4.67e-10;17!CL:1000449;1.30e-09;15!CL:0002076;1.30e-09;42!CL:0000077;1.89e-09;19!CL:0002368;2.16e-08;13!CL:1000507;4.62e-08;10!CL:1000494;4.62e-08;10!CL:0002077;9.45e-08;34!CL:0002681;1.08e-07;12!CL:0002584;1.08e-07;12!CL:0000075;1.52e-07;27 | ||
|ontology_enrichment_disease=DOID:120;4.24e-07;27!DOID:193;6.15e-07;29 | |ontology_enrichment_celltype_v019_2=CL:0000066,1.54e-36,253;CL:0002321,7.10e-34,250;CL:0000222,1.50e-14,121;CL:0002076,9.52e-13,42;CL:0000076,1.80e-11,63;CL:0000223,2.14e-10,58;CL:1000497,5.01e-10,17;CL:0002518,5.01e-10,17;CL:1000449,1.39e-09,15;CL:0000077,1.79e-09,19;CL:0002077,1.31e-08,34;CL:0002368,2.28e-08,13;CL:0000221,4.72e-08,72;CL:1000507,4.73e-08,10;CL:1000494,4.73e-08,10;CL:0000680,1.07e-07,58;CL:0000056,1.07e-07,58;CL:0000355,1.07e-07,58;CL:0002681,1.15e-07,12;CL:0002584,1.15e-07,12;CL:0000075,1.43e-07,27;CL:0000187,8.10e-07,55 | ||
|ontology_enrichment_uberon=UBERON:0006555;1.30e-09;15!UBERON:0004819;1.30e-09;15!UBERON:0001285;1.30e-09;15!UBERON:0007684;1.30e-09;15!UBERON:0000353;1.50e-08;15!UBERON:0006554;2.90e-08;30!UBERON:0001008;2.90e-08;30!UBERON:0004211;4.62e-08;10!UBERON:0009773;4.62e-08;10!UBERON:0001231;4.62e-08;10!UBERON:0004810;4.62e-08;10!UBERON:0010371;1.06e-07;31!UBERON:0001225;1.08e-07;12!UBERON:0008987;1.08e-07;12!UBERON:0001851;1.77e-07;15 | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:193!5.10e-07!29;DOID:120!5.95e-07!27 | |||
|ontology_enrichment_disease_v019=DOID:120;4.24e-07;27!DOID:193;6.15e-07;29 | |||
|ontology_enrichment_disease_v019_2=DOID:120,4.03e-07,27;DOID:193,5.86e-07,29 | |||
|ontology_enrichment_uberon=UBERON:0000481!9.88e-20!347;UBERON:0003104!1.13e-19!238;UBERON:0009142!1.13e-19!238;UBERON:0000475!2.07e-19!365;UBERON:0002100!7.55e-18!216;UBERON:0005256!1.85e-16!143;UBERON:0000119!1.05e-13!312;UBERON:0000483!1.17e-13!309;UBERON:0000464!3.19e-11!104;UBERON:0000486!6.42e-11!82;UBERON:0000468!6.50e-11!659;UBERON:0000467!8.06e-11!625;UBERON:0001048!1.01e-10!168;UBERON:0000480!1.23e-10!626;UBERON:0000466!1.70e-10!126;UBERON:0004119!2.78e-10!169;UBERON:0000925!2.78e-10!169;UBERON:0006595!2.78e-10!169;UBERON:0000914!3.58e-10!83;UBERON:0002329!3.58e-10!83;UBERON:0003077!3.58e-10!83;UBERON:0003059!3.58e-10!83;UBERON:0007282!3.58e-10!83;UBERON:0009618!3.58e-10!83;UBERON:0007285!3.58e-10!83;UBERON:0004211!1.80e-09!16;UBERON:0001285!1.80e-09!16;UBERON:0007684!1.80e-09!16;UBERON:0003220!1.80e-09!16;UBERON:0004208!1.80e-09!16;UBERON:0003914!1.91e-09!118;UBERON:0005177!2.93e-09!107;UBERON:0000058!3.68e-09!26;UBERON:0000490!5.60e-09!138;UBERON:0006555!5.64e-09!17;UBERON:0005103!5.64e-09!17;UBERON:0000083!5.64e-09!17;UBERON:0009201!5.64e-09!17;UBERON:0004819!5.64e-09!17;UBERON:0006553!5.64e-09!17;UBERON:0003074!5.64e-09!17;UBERON:0003060!5.64e-09!17;UBERON:0003102!7.50e-09!95;UBERON:0004290!2.00e-08!70;UBERON:0000080!2.52e-08!18;UBERON:0002120!2.52e-08!18;UBERON:0004875!2.52e-08!18;UBERON:0005721!2.52e-08!18;UBERON:0005754!2.52e-08!18;UBERON:0007297!2.52e-08!18;UBERON:0000353!2.93e-08!17;UBERON:0004876!4.77e-08!20;UBERON:0009773!5.52e-08!12;UBERON:0001231!5.52e-08!12;UBERON:0004810!5.52e-08!12;UBERON:0005085!8.85e-08!29;UBERON:0000923!9.34e-08!604;UBERON:0005291!9.34e-08!604;UBERON:0006598!9.34e-08!604;UBERON:0002532!9.34e-08!604;UBERON:0002050!9.49e-08!605;UBERON:0005423!9.49e-08!605;UBERON:0002553!9.92e-08!70;UBERON:0003886!1.02e-07!63;UBERON:0001851!1.09e-07!16;UBERON:0001225!1.28e-07!13;UBERON:0008987!1.28e-07!13;UBERON:0003064!1.40e-07!37;UBERON:0006554!1.49e-07!44;UBERON:0000922!1.63e-07!612;UBERON:0000477!2.20e-07!286;UBERON:0001007!2.23e-07!155;UBERON:0001555!2.23e-07!155;UBERON:0007026!2.23e-07!155;UBERON:0001008!2.71e-07!45;UBERON:0001134!3.51e-07!61;UBERON:0002036!3.51e-07!61;UBERON:0003082!3.51e-07!61;UBERON:0002385!6.19e-07!63;UBERON:0001015!6.19e-07!63;UBERON:0000383!6.19e-07!63;UBERON:0003887!7.37e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.30e-09;15!UBERON:0004819;1.30e-09;15!UBERON:0001285;1.30e-09;15!UBERON:0007684;1.30e-09;15!UBERON:0000353;1.50e-08;15!UBERON:0006554;2.90e-08;30!UBERON:0001008;2.90e-08;30!UBERON:0004211;4.62e-08;10!UBERON:0009773;4.62e-08;10!UBERON:0001231;4.62e-08;10!UBERON:0004810;4.62e-08;10!UBERON:0010371;1.06e-07;31!UBERON:0001225;1.08e-07;12!UBERON:0008987;1.08e-07;12!UBERON:0001851;1.77e-07;15 | |||
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| ||
|short_description=p2@ITGA3 | |short_description=p2@ITGA3 | ||
}} | }} |
Latest revision as of 22:18, 15 September 2015
Short description: | p2@ITGA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ITGA3_5end |
Coexpression cluster: | C2418_Renal_Urothelial_salivary_Corneal_Bronchial_Mammary_Keratinocyte |
Association with transcript: | 0bp_to_ENST00000007722, ENST00000506401, ENST00000538917, ENST00000544892, NM_002204, NM_005501, uc010dbl.2, uc010dbm.2_5end |
EntrezGene: | ITGA3 |
HGNC: | 6139 |
UniProt: | P26006D6R9X8B4E0H8B4DDT0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.54e-36 | 253 |
embryonic cell | 7.10e-34 | 250 |
mesodermal cell | 1.50e-14 | 121 |
endo-epithelial cell | 9.52e-13 | 42 |
squamous epithelial cell | 1.80e-11 | 63 |
endodermal cell | 2.14e-10 | 58 |
kidney cell | 5.01e-10 | 17 |
kidney epithelial cell | 5.01e-10 | 17 |
epithelial cell of nephron | 1.39e-09 | 15 |
mesothelial cell | 1.79e-09 | 19 |
ecto-epithelial cell | 1.31e-08 | 34 |
respiratory epithelial cell | 2.28e-08 | 13 |
ectodermal cell | 4.72e-08 | 72 |
kidney tubule cell | 4.73e-08 | 10 |
nephron tubule epithelial cell | 4.73e-08 | 10 |
muscle precursor cell | 1.07e-07 | 58 |
myoblast | 1.07e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.07e-07 | 58 |
kidney cortical cell | 1.15e-07 | 12 |
renal cortical epithelial cell | 1.15e-07 | 12 |
columnar/cuboidal epithelial cell | 1.43e-07 | 27 |
muscle cell | 8.10e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
female reproductive organ cancer | 4.03e-07 | 27 |
reproductive organ cancer | 5.86e-07 | 29 |