FFCP PHASE1:Hg19::chr13:75890705..75890726,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9882 | |EntrezGene=9882 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19165 | |HGNC=19165 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=12bp_to_uc010tht.1,uc010thu.1_5end | |association_with_transcript=12bp_to_uc010tht.1,uc010thu.1_5end | ||
|cluster_id=chr13:75890705..75890726,- | |||
|coexpression_cluster_id=C144 | |coexpression_cluster_id=C144 | ||
|description=CAGE_peak_8_at_TBC1D4_5end | |description=CAGE_peak_8_at_TBC1D4_5end | ||
|id=chr13:75890705..75890726,- | |id=chr13:75890705..75890726,- | ||
|ontology_enrichment_celltype=CL:0000624;4.87e-18;6!CL:0000840;1.36e-07;5!CL:0000898;5.99e-07;3!CL:0000860;7.74e-07;33!CL:0002057;7.74e-07;33 | |ontology_enrichment_celltype=CL:0000624!6.46e-10!6;CL:0002087!1.24e-07!119;CL:0000738!1.57e-07!140;CL:0000990!1.83e-07!8;CL:0000840!5.69e-07!5;CL:0001029!5.69e-07!5;CL:0000791!7.75e-07!18;CL:0000789!7.75e-07!18;CL:0002420!7.75e-07!18;CL:0002419!7.75e-07!18;CL:0000790!7.75e-07!18 | ||
| | |ontology_enrichment_celltype_v019=CL:0000624;4.87e-18;6!CL:0000840;1.36e-07;5!CL:0000898;5.99e-07;3!CL:0000860;7.74e-07;33!CL:0002057;7.74e-07;33 | ||
|ontology_enrichment_celltype_v019_2=CL:0000624,2.05e-18,6;CL:0002087,2.40e-08,115;CL:0002194,2.79e-08,59;CL:0000576,2.79e-08,59;CL:0000040,2.79e-08,59;CL:0000559,2.79e-08,59;CL:0002009,6.17e-08,61;CL:0002031,7.69e-08,120;CL:0000840,1.32e-07,5;CL:0001029,1.32e-07,5;CL:0000839,3.63e-07,66;CL:0000898,4.33e-07,3;CL:0000557,5.01e-07,67 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0004177;4.08e-14;5!UBERON:0005057;4.08e-14;5!UBERON:0002370;1.66e-09;2!UBERON:0005058;1.66e-09;2!UBERON:0009113;1.66e-09;2!UBERON:0002106;8.16e-07;3 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.24e-40!115;UBERON:0001049!3.73e-16!57;UBERON:0005068!3.73e-16!57;UBERON:0006241!3.73e-16!57;UBERON:0007135!3.73e-16!57;UBERON:0002616!7.93e-12!59;UBERON:0002780!5.96e-11!41;UBERON:0001890!5.96e-11!41;UBERON:0006240!5.96e-11!41;UBERON:0002020!1.30e-10!34;UBERON:0003528!1.30e-10!34;UBERON:0001017!1.41e-10!82;UBERON:0003080!1.51e-10!42;UBERON:0005743!1.96e-10!86;UBERON:0001893!2.23e-10!34;UBERON:0001869!4.21e-10!32;UBERON:0002390!5.07e-10!102;UBERON:0003061!5.07e-10!102;UBERON:0003075!7.22e-10!86;UBERON:0007284!7.22e-10!86;UBERON:0002791!8.64e-10!33;UBERON:0002346!1.14e-09!90;UBERON:0002193!1.20e-09!112;UBERON:0000955!1.82e-09!69;UBERON:0006238!1.82e-09!69;UBERON:0000073!1.40e-08!94;UBERON:0001016!1.40e-08!94;UBERON:0002308!2.35e-08!9;UBERON:0000125!2.35e-08!9;UBERON:0003076!3.38e-07!15;UBERON:0003057!3.38e-07!15;UBERON:0003056!8.00e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0004177;4.08e-14;5!UBERON:0005057;4.08e-14;5!UBERON:0002370;1.66e-09;2!UBERON:0005058;1.66e-09;2!UBERON:0009113;1.66e-09;2!UBERON:0002106;8.16e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,2.46e-15,7;UBERON:0005057,2.46e-15,7;UBERON:0002390,8.76e-15,98;UBERON:0003061,8.76e-15,98;UBERON:0002193,1.70e-14,108;UBERON:0002405,1.25e-12,93;UBERON:0002370,3.64e-10,4;UBERON:0005058,3.64e-10,4;UBERON:0009113,3.64e-10,4;UBERON:0003295,3.64e-10,4;UBERON:0005562,3.64e-10,4;UBERON:0002371,4.12e-07,76;UBERON:0001042,4.42e-07,10;UBERON:0009145,4.42e-07,10;UBERON:0003351,6.37e-07,6;UBERON:0002106,7.17e-07,3;UBERON:0004854,7.17e-07,3;UBERON:0009034,7.17e-07,3;UBERON:0002095,7.17e-07,3;UBERON:0004782,7.17e-07,3;UBERON:0003281,7.17e-07,3;UBERON:0009664,7.17e-07,3;UBERON:0002296,7.17e-07,3;UBERON:0005602,7.17e-07,3;UBERON:0001179,7.17e-07,3;UBERON:0006293,7.17e-07,3 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,1.0007329835313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0.895661896959697,0.32389366601898,0.515151135268373,0,0,1.94067248950253,0.232429036905685,0,1.23882548358041,0,0,0.236482229888585,0,0,1.35426486594342,0,0,3.59557575112135,0,0,2.55734850319616,0,0,0.852449501065388,0,0,1.86846674698672,0,0,1.08594422352558,0,0,3.79754864929061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.180258620683,1.57204305099666,1.85041349099558,3.00935691703221,0.977766799900771,0.946895611469467,0,26.0700469111306,20.0332017082889,33.4516180821268,46.0366568400527,42.7825007883755,48.3820772922747,0,0,0.579606171470105,0,0,0,1.47302145506836,1.91610246800961,1.03088233644789,2.53019692019503,0.95569624297229,0,0,0,0.76791966692651,0,0.473554504088034,0.821127996921047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,4.21911611751088,4.35324343248168,3.98873881556595,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96973604869918,0.234004265139238,0.594524649154913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0.197030760201927,0.862510299438069,0.513372145118994,0,0,0,0.502548796003046,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.647142602455851,0.320182673410333,0,0,0,0,0.306923946576125,0,0,1.02341449813341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515205058238611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.753150406214233,0,0,0,0,0.507447609232169,0,1.13929437434833,0.238231775457789,0.411362273086194,0,1.62009431171434,0,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02555725490326,0,0,0,0,0,0,0,0.562677665642051,0,0,0,0.398495976502139,1.38141957765574,0,0,0,0,0,0,0,0.0986434056369336,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.241192877250816,0,0,0.295547618953547,0,0,0,0.538651809526579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0.611030144933625,0,0,0,0.404406797884062,0,0,0,0,0,0,0,0,0.568679216656392,0,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0,0,0,0,0,0.0882561266915003,0,0,0,0.50648636764703,0,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,1.09524303113594,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0.795229689809303,0.681017030557878,0,0,0,0.899895566206002,0.77380195455795,0.121499113316049,0,0.394028536495991,0,0,0.896436696664224,0,0,0,0,0,0,0,0,0,0,0,0.58620893471233,1.32506888912221,0.646414781807753,0.39669780522807,0,0,1.06787412567695,0,2.07119527673598,0.496166021811951,0,0,0,0,0,0,0,0,0,0.366078794705889,0.3755727921195,0.573409195690071,0.665574309221114,0.434674820589684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0,0,0,0.553033744606923,0.194860308839388,0.265729680626726,0,0,0,0,0,0,6.19973926778936,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0.0642292250964595,0,0.478901577171454,0,0,0.276629009856872,0.484426936895553,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0.147856086217045,0.0675375846183947,0,0,0.317079050969534,0,0,0,0,0,0,1.68141861109412,0,0.227662191351298,1.06442844195167,0,0,0.339848664884159,0.131545547125698,0,0,0.313972371402056,0.314231179832004,0,0,0,0,0.428859265059938,0.158013611732727,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0.308696632431779,0.874238242015829,0,0,0,0.588925401344836,1.18818560130834,0.4226557275834,0,2.25561403151649,1.48253142339228,0,0,0,0,0,0.458729283404541,0,0,0.0679914901909147,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.606229585745915,0.267964130156178,0,0.413731983447581,0.426467963801962,0,1.16260037704811,1.05527014302958,0,0.12729431655633,0,0,0,2.22261774948139,0.215166616178029,0,0,0,0,0,0,0.122241444182866,0,0,0.402547587182052,0 | |phase1_expression=0.181678379270557,0,0.140954404095971,1.0007329835313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0.895661896959697,0.32389366601898,0.515151135268373,0,0,1.94067248950253,0.232429036905685,0,1.23882548358041,0,0,0.236482229888585,0,0,1.35426486594342,0,0,3.59557575112135,0,0,2.55734850319616,0,0,0.852449501065388,0,0,1.86846674698672,0,0,1.08594422352558,0,0,3.79754864929061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.180258620683,1.57204305099666,1.85041349099558,3.00935691703221,0.977766799900771,0.946895611469467,0,26.0700469111306,20.0332017082889,33.4516180821268,46.0366568400527,42.7825007883755,48.3820772922747,0,0,0.579606171470105,0,0,0,1.47302145506836,1.91610246800961,1.03088233644789,2.53019692019503,0.95569624297229,0,0,0,0.76791966692651,0,0.473554504088034,0.821127996921047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,4.21911611751088,4.35324343248168,3.98873881556595,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96973604869918,0.234004265139238,0.594524649154913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0.197030760201927,0.862510299438069,0.513372145118994,0,0,0,0.502548796003046,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.647142602455851,0.320182673410333,0,0,0,0,0.306923946576125,0,0,1.02341449813341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515205058238611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.753150406214233,0,0,0,0,0.507447609232169,0,1.13929437434833,0.238231775457789,0.411362273086194,0,1.62009431171434,0,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02555725490326,0,0,0,0,0,0,0,0.562677665642051,0,0,0,0.398495976502139,1.38141957765574,0,0,0,0,0,0,0,0.0986434056369336,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.241192877250816,0,0,0.295547618953547,0,0,0,0.538651809526579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0.611030144933625,0,0,0,0.404406797884062,0,0,0,0,0,0,0,0,0.568679216656392,0,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0,0,0,0,0,0.0882561266915003,0,0,0,0.50648636764703,0,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,1.09524303113594,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0.795229689809303,0.681017030557878,0,0,0,0.899895566206002,0.77380195455795,0.121499113316049,0,0.394028536495991,0,0,0.896436696664224,0,0,0,0,0,0,0,0,0,0,0,0.58620893471233,1.32506888912221,0.646414781807753,0.39669780522807,0,0,1.06787412567695,0,2.07119527673598,0.496166021811951,0,0,0,0,0,0,0,0,0,0.366078794705889,0.3755727921195,0.573409195690071,0.665574309221114,0.434674820589684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0,0,0,0.553033744606923,0.194860308839388,0.265729680626726,0,0,0,0,0,0,6.19973926778936,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0.0642292250964595,0,0.478901577171454,0,0,0.276629009856872,0.484426936895553,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0.147856086217045,0.0675375846183947,0,0,0.317079050969534,0,0,0,0,0,0,1.68141861109412,0,0.227662191351298,1.06442844195167,0,0,0.339848664884159,0.131545547125698,0,0,0.313972371402056,0.314231179832004,0,0,0,0,0.428859265059938,0.158013611732727,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0.308696632431779,0.874238242015829,0,0,0,0.588925401344836,1.18818560130834,0.4226557275834,0,2.25561403151649,1.48253142339228,0,0,0,0,0,0.458729283404541,0,0,0.0679914901909147,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.606229585745915,0.267964130156178,0,0.413731983447581,0.426467963801962,0,1.16260037704811,1.05527014302958,0,0.12729431655633,0,0,0,2.22261774948139,0.215166616178029,0,0,0,0,0,0,0.122241444182866,0,0,0.402547587182052,0 | ||
|short_description=p8@TBC1D4 | |short_description=p8@TBC1D4 | ||
}} | }} |
Latest revision as of 23:33, 17 September 2015
Short description: | p8@TBC1D4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_TBC1D4_5end |
Coexpression cluster: | C144_CD4_tonsil_NK_appendix_CD8_splenic_mycosis |
Association with transcript: | 12bp_to_uc010tht.1, uc010thu.1_5end |
EntrezGene: | TBC1D4 |
HGNC: | 19165 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta T cell | 2.05e-18 | 6 |
nongranular leukocyte | 2.40e-08 | 115 |
monopoietic cell | 2.79e-08 | 59 |
monocyte | 2.79e-08 | 59 |
monoblast | 2.79e-08 | 59 |
promonocyte | 2.79e-08 | 59 |
macrophage dendritic cell progenitor | 6.17e-08 | 61 |
hematopoietic lineage restricted progenitor cell | 7.69e-08 | 120 |
immature conventional dendritic cell | 1.32e-07 | 5 |
common dendritic progenitor | 1.32e-07 | 5 |
myeloid lineage restricted progenitor cell | 3.63e-07 | 66 |
naive T cell | 4.33e-07 | 3 |
granulocyte monocyte progenitor cell | 5.01e-07 | 67 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 2.46e-15 | 7 |
immune organ | 2.46e-15 | 7 |
hematopoietic system | 8.76e-15 | 98 |
blood island | 8.76e-15 | 98 |
hemolymphoid system | 1.70e-14 | 108 |
immune system | 1.25e-12 | 93 |
thymus | 3.64e-10 | 4 |
hemolymphoid system gland | 3.64e-10 | 4 |
thymic region | 3.64e-10 | 4 |
pharyngeal gland | 3.64e-10 | 4 |
thymus primordium | 3.64e-10 | 4 |
bone marrow | 4.12e-07 | 76 |
chordate pharynx | 4.42e-07 | 10 |
pharyngeal region of foregut | 4.42e-07 | 10 |
pharyngeal epithelium | 6.37e-07 | 6 |
spleen | 7.17e-07 | 3 |
gastrointestinal system mesentery | 7.17e-07 | 3 |
stomach region | 7.17e-07 | 3 |
mesentery | 7.17e-07 | 3 |
gastrointestinal system serosa | 7.17e-07 | 3 |
mesentery of stomach | 7.17e-07 | 3 |
gut mesentery | 7.17e-07 | 3 |
dorsal mesentery | 7.17e-07 | 3 |
dorsal mesogastrium | 7.17e-07 | 3 |
peritoneal cavity | 7.17e-07 | 3 |
spleen primordium | 7.17e-07 | 3 |