Personal tools

UBERON:0001225: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0001225
|alt_id=UBERON:FMA_15581-MA_0000372
|name=cortex of kidney
|namespace=
|def="Region of parenchyma of kidney representing the outer portion.[FMA]" [FMA:FMA, Wikipedia:Renal_cortex]
|xref=BTO:0001166;;EHDAA:9332;;EMAPA:17952;;FMA:15581;;GAID:424;;galen:CortexOfKidney;;http://upload.wikimedia.org/wikipedia/commons/6/69/Illu_kidney.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/69/Illu_kidney.jpg/200px-Illu_kidney.jpg;;MA:0000372;;MESH:A.05.810.453.324;;ncithesaurus:Renal_Cortex;;SCTID:362211004
|is_a=UBERON:0001851;;UBERON:0006554
|synonym="cortex renalis" EXACT [FMA:15581, FMA:TA];;"kidney cortex" EXACT [];;"renal cortex" EXACT []
|comment=
|comment=
|alt_id=UBERON:FMA_15581-MA_0000372
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Region of parenchyma of kidney representing the outer portion.[FMA]" [FMA:FMA, Wikipedia:Renal_cortex]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001225
|is_a=UBERON:0001851 ;;UBERON:0006554
|is_obsolete=
|located_in=
|located_in=
|name=cortex of kidney
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002113;;UBERON:0008987
|part_of=UBERON:0002113;;UBERON:0008987
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="cortex renalis" EXACT [FMA:15581, FMA:TA];;"kidney cortex" EXACT [];;"renal cortex" EXACT []
|union_of=
|xref=BTO:0001166;;EHDAA:9332;;EMAPA:17952;;FMA:15581;;GAID:424;;galen:CortexOfKidney;;http://upload.wikimedia.org/wikipedia/commons/6/69/Illu_kidney.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/69/Illu_kidney.jpg/200px-Illu_kidney.jpg;;MA:0000372;;MESH:A.05.810.453.324;;ncithesaurus:Renal_Cortex;;SCTID:362211004
}}
}}

Latest revision as of 17:16, 12 September 2014

Name:cortex of kidney
Namespace:FANTOM
Definition:"Region of parenchyma of kidney representing the outer portion.[FMA]" [FMA:FMA, Wikipedia:Renal_cortex]
Xrefs:
links:

BTO:0001166
EHDAA:9332
EMAPA:17952
FMA:15581
GAID:424
galen:CortexOfKidney
[1]
[2]
MA:0000372
MESH:A.05.810.453.324
ncithesaurus:Renal_Cortex

SCTID:362211004
Synonyms: "cortex renalis" EXACT [FMA:15581, FMA:TA]
"kidney cortex" EXACT []
"renal cortex" EXACT []
Alt_id: UBERON:FMA_15581-MA_0000372
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001851(cortex),UBERON:0006554(urinary system structure)
part_of:UBERON:0002113(kidney),UBERON:0008987(renal parenchyma)



Children

part of:UBERON:0001229 (renal corpuscle),UBERON:0002303 (juxtaglomerular apparatus),CL:0002584 (renal cortical epithelial cell),CL:0002681 (kidney cortical cell),UBERON:0004134 (proximal tubule),UBERON:0006853 (renal cortex tubule)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001225 (cortex of kidney), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.8e-58FFCP PHASE2:Hg19::chr2:693380..693398,+#_0967317cb6a503867b7f0742e3b3cd25p@chr2:693380..693398, +
4.8e-58FFCP PHASE1:Hg19::chr2:693380..693398,+#_0967317cb6a503867b7f0742e3b3cd25p@chr2:693380..693398, +
4.05e-52FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_37d53089d0525b985215db698c98d9eap7@HOXA10
4.05e-52FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_37d53089d0525b985215db698c98d9eap7@HOXA10
1.06e-50FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_83ec7f176c165414260e3c655c45212fp@chr5:74244100..74244117, +
1.06e-50FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_83ec7f176c165414260e3c655c45212fp@chr5:74244100..74244117, +
5.59e-50FFCP PHASE1:Hg19::chr1:20465872..20465881,+#_3c8f12c02fc5da3b2d2cab2418b20ee1p2@PLA2G2F
5.59e-50FFCP PHASE2:Hg19::chr1:20465872..20465881,+#_3c8f12c02fc5da3b2d2cab2418b20ee1p2@PLA2G2F
6.11e-42FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_450531ab2a03d7a9da85ee1734957711p@chr16:86768403..86768437, +
6.11e-42FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_450531ab2a03d7a9da85ee1734957711p@chr16:86768403..86768437, +
3.58e-41FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_54daa4e9cae63e75975bced026031b7ap4@MEGF11
3.58e-41FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_54daa4e9cae63e75975bced026031b7ap4@MEGF11
1.0e-40FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_cf437614184f3d480cbc895a630ae9c4p1@ENST00000413103
1.0e-40FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_cf437614184f3d480cbc895a630ae9c4p1@ENST00000413103
6.83e-40FFCP PHASE2:Hg19::chr7:140227303..140227330,-#_fc653487c83d5f0da66470a6aec917cbp@chr7:140227303..140227330, -
6.83e-40FFCP PHASE1:Hg19::chr7:140227303..140227330,-#_fc653487c83d5f0da66470a6aec917cbp@chr7:140227303..140227330, -
9.22e-40FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_59119e9118a264f6781bf94d4e3fd089p3@PAX2
9.22e-40FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_59119e9118a264f6781bf94d4e3fd089p3@PAX2
1.79e-39FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_bc3dcb12e0dd3f803e2b71d87c1d46c9p@chr18:3456189..3456200, +
1.79e-39FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_bc3dcb12e0dd3f803e2b71d87c1d46c9p@chr18:3456189..3456200, +
4.5e-38FFCP PHASE2:Hg19::chr6:30890456..30890482,+#_815db6f8381bbd0044a52dba429c7499p11@VARS2
4.5e-38FFCP PHASE1:Hg19::chr6:30890456..30890482,+#_815db6f8381bbd0044a52dba429c7499p11@VARS2
8.61e-38FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_03b8556bb1df2d0f38d853f01584d8edp@chr2:120409486..120409492, +
8.61e-38FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_03b8556bb1df2d0f38d853f01584d8edp@chr2:120409486..120409492, +
5.07e-37FFCP PHASE2:Hg19::chr20:6033532..6033548,-#_2302cf15710ad44b749ff4f0c0492a29p2@AB527789
5.07e-37FFCP PHASE1:Hg19::chr20:6033532..6033548,-#_2302cf15710ad44b749ff4f0c0492a29p2@AB527789
6.37e-37FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_f4e3aaa55d630e72b39c2bac76324407p@chr1:1100457..1100470, +
6.37e-37FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_f4e3aaa55d630e72b39c2bac76324407p@chr1:1100457..1100470, +
1.63e-36FFCP PHASE2:Hg19::chr20:6034607..6034616,-#_0aafef9e374046a2db1b29ee44acb7ddp6@LRRN4
1.63e-36FFCP PHASE1:Hg19::chr20:6034607..6034616,-#_0aafef9e374046a2db1b29ee44acb7ddp6@LRRN4
2.81e-35FFCP PHASE2:Hg19::chr17:36104873..36104903,-#_7afb899ea70129746ae1c560c9e6dfafp3@HNF1B
2.81e-35FFCP PHASE1:Hg19::chr17:36104873..36104903,-#_7afb899ea70129746ae1c560c9e6dfafp3@HNF1B
4.37e-35FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_92ae2b9432bd4e95434f527464b58d7bp4@AIF1L
4.37e-35FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_92ae2b9432bd4e95434f527464b58d7bp4@AIF1L
1.19e-34FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_c2344b65c8804ecf6af85b235c61c037p4@PAX2
1.19e-34FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_c2344b65c8804ecf6af85b235c61c037p4@PAX2
5.98e-34FFCP PHASE2:Hg19::chr5:167718782..167718785,+#_a79e182cb214989ca33ec19c5a058737p10@WWC1
5.98e-34FFCP PHASE1:Hg19::chr5:167718782..167718785,+#_a79e182cb214989ca33ec19c5a058737p10@WWC1
2.93e-33FFCP PHASE2:Hg19::chr20:6034672..6034714,-#_62cbfca880d692439662c6245cdd6027p2@LRRN4
2.93e-33FFCP PHASE1:Hg19::chr20:6034672..6034714,-#_62cbfca880d692439662c6245cdd6027p2@LRRN4
1.44e-32FFCP PHASE1:Hg19::chr16:3068288..3068312,-#_68ae6c0dc687091d381d09c8a61295e1p2@CLDN6
1.44e-32FFCP PHASE2:Hg19::chr16:3068288..3068312,-#_68ae6c0dc687091d381d09c8a61295e1p2@CLDN6
1.85e-32FFCP PHASE1:Hg19::chr20:6034828..6034857,-#_8b47c58f7a8c794786c40acbe8e314f8p5@LRRN4
1.85e-32FFCP PHASE2:Hg19::chr20:6034828..6034857,-#_8b47c58f7a8c794786c40acbe8e314f8p5@LRRN4
4.69e-32FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_bbe992bdfa5cb1d5bcaeec8d5619f227p@chr7:140227349..140227360, -
4.69e-32FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_bbe992bdfa5cb1d5bcaeec8d5619f227p@chr7:140227349..140227360, -
1.23e-31FFCP PHASE1:Hg19::chr17:27970385..27970397,-#_5a3dab118f8da97071ec76d1de68034cp@chr17:27970385..27970397, -
1.23e-31FFCP PHASE2:Hg19::chr17:27970385..27970397,-#_5a3dab118f8da97071ec76d1de68034cp@chr17:27970385..27970397, -
2.99e-30FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_f676cc28701d7692d7018452b293bae5p@chr15:85403302..85403304, +
2.99e-30FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_f676cc28701d7692d7018452b293bae5p@chr15:85403302..85403304, +
3.02e-30FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_e715f54d5e4f070ed601f10a08fba736p2@B3GALT5
3.02e-30FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_e715f54d5e4f070ed601f10a08fba736p2@B3GALT5
1.06e-29FFCP PHASE2:Hg19::chr19:50390837..50390847,+#_5389d4bd0bad4acead00936c441ac473p@chr19:50390837..50390847, +
1.06e-29FFCP PHASE1:Hg19::chr19:50390837..50390847,+#_5389d4bd0bad4acead00936c441ac473p@chr19:50390837..50390847, +
1.26e-29FFCP PHASE1:Hg19::chr20:6034576..6034592,-#_a93ed5664ba19f93bb4c819bdf493770p3@LRRN4
1.26e-29FFCP PHASE2:Hg19::chr20:6034576..6034592,-#_a93ed5664ba19f93bb4c819bdf493770p3@LRRN4
1.54e-29FFCP PHASE2:Hg19::chr17:171147..171161,+#_f8b6113e91b7fdc6d69eaac5b3ea9093p@chr17:171147..171161, +
1.54e-29FFCP PHASE1:Hg19::chr17:171147..171161,+#_f8b6113e91b7fdc6d69eaac5b3ea9093p@chr17:171147..171161, +
3.11e-29FFCP PHASE2:Hg19::chr21:46826248..46826282,-#_2a4e82c025b8103ac5ee6c4df7f1ffaap@chr21:46826248..46826282, -
3.11e-29FFCP PHASE1:Hg19::chr21:46826248..46826282,-#_2a4e82c025b8103ac5ee6c4df7f1ffaap@chr21:46826248..46826282, -
4.34e-29FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_9c158e5287508874e5ce97a038265e0dp1@ENST00000418041, p1@ENST00000443104
4.34e-29FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_9c158e5287508874e5ce97a038265e0dp1@ENST00000418041, p1@ENST00000443104
1.58e-28FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_b7118521aa8fa70a05b6cadfbad9211ap3@AIF1L
1.58e-28FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_b7118521aa8fa70a05b6cadfbad9211ap3@AIF1L
2.94e-28FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_dc797c2c0a2995eab95a8d753e0408b0p@chr7:7606139..7606151, -
2.94e-28FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_dc797c2c0a2995eab95a8d753e0408b0p@chr7:7606139..7606151, -
6.08e-28FFCP PHASE2:Hg19::chr10:91043420..91043437,+#_c7970272d14b3fbf84ca692631920fe2p1@ENST00000444849
6.08e-28FFCP PHASE1:Hg19::chr10:91043420..91043437,+#_c7970272d14b3fbf84ca692631920fe2p1@ENST00000444849
1.11e-27FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_2d7da238e689edca371ce1daff006cbbp2@PAX2
1.11e-27FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_2d7da238e689edca371ce1daff006cbbp2@PAX2
2.09e-27FFCP PHASE2:Hg19::chr9:71735910..71735923,+#_f8408004d532c1e2ed9c592baf800bb8p16@TJP2
2.09e-27FFCP PHASE1:Hg19::chr9:71735910..71735923,+#_f8408004d532c1e2ed9c592baf800bb8p16@TJP2
2.35e-27FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_ad4f68a2b8f3541515272af9ce3e2d48p@chr16:86604624..86604648, +
2.35e-27FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_ad4f68a2b8f3541515272af9ce3e2d48p@chr16:86604624..86604648, +
3.45e-27FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_723ed9900f2a15bf48c59a64b55d277ep7@LRRN4
3.45e-27FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_723ed9900f2a15bf48c59a64b55d277ep7@LRRN4
7.25e-27FFCP PHASE2:Hg19::chr17:171082..171101,+#_c3a1fcd2396b0e73cfb23b2fba6540d3p@chr17:171082..171101, +
7.25e-27FFCP PHASE1:Hg19::chr17:171082..171101,+#_c3a1fcd2396b0e73cfb23b2fba6540d3p@chr17:171082..171101, +
4.96e-26FFCP PHASE2:Hg19::chr20:6033140..6033181,-#_0dc7dd3763c80730e68a1187bd9582a1p1@AB527789
4.96e-26FFCP PHASE1:Hg19::chr20:6033140..6033181,-#_0dc7dd3763c80730e68a1187bd9582a1p1@AB527789
7.1e-26FFCP PHASE1:Hg19::chr2:108994633..108994650,+#_842780027a6ffe6f7d269816d9ae25ccp4@SULT1C4
7.1e-26FFCP PHASE2:Hg19::chr2:108994633..108994650,+#_842780027a6ffe6f7d269816d9ae25ccp4@SULT1C4
9.68e-25FFCP PHASE1:Hg19::chr6:24358114..24358125,-#_f05139bc33c2f00de7b0ff37f9aa38e6p4@DCDC2
9.68e-25FFCP PHASE2:Hg19::chr6:24358114..24358125,-#_f05139bc33c2f00de7b0ff37f9aa38e6p4@DCDC2
1.6e-24FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_70a65b9284a20e04484d67a2ca633fd7p16@HOXA10
1.6e-24FFCP PHASE1:Hg19::chr2:177053683..177053697,-#_70a65b9284a20e04484d67a2ca633fd7p1@LOC401022
1.6e-24FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_70a65b9284a20e04484d67a2ca633fd7p16@HOXA10
1.6e-24FFCP PHASE2:Hg19::chr2:177053683..177053697,-#_70a65b9284a20e04484d67a2ca633fd7p1@LOC401022
1.66e-24FFCP PHASE2:Hg19::chr22:37823036..37823049,-#_5c010e831631c1c09de1e32ab51b8cb2p1@ENST00000451509
1.66e-24FFCP PHASE1:Hg19::chr22:37823036..37823049,-#_5c010e831631c1c09de1e32ab51b8cb2p1@ENST00000451509
1.87e-24FFCP PHASE1:Hg19::chr17:46675539..46675551,-#_f0d1c43dac4d0bc7b8d40d9866a7ee86p7@HOXB6
1.87e-24FFCP PHASE2:Hg19::chr17:46675539..46675551,-#_f0d1c43dac4d0bc7b8d40d9866a7ee86p7@HOXB6
2.63e-24FFCP PHASE1:Hg19::chr13:26619917..26619921,-#_5a70ec12e320952b7a183f89d96362f0p@chr13:26619917..26619921, -
2.63e-24FFCP PHASE2:Hg19::chr13:26619917..26619921,-#_5a70ec12e320952b7a183f89d96362f0p@chr13:26619917..26619921, -
2.91e-24FFCP PHASE1:Hg19::chr2:177016336..177016350,+#_ef50475e76b81b4c1de0c1b8c37c52f0p1@HOXD4
2.91e-24FFCP PHASE2:Hg19::chr2:177016336..177016350,+#_ef50475e76b81b4c1de0c1b8c37c52f0p1@HOXD4
2.98e-24FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_eee2c3d507756e26346e903950efbc67p@chr7:98453821..98453843, -
2.98e-24FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_eee2c3d507756e26346e903950efbc67p@chr7:98453821..98453843, -
3.49e-24FFCP PHASE2:Hg19::chr12:6485243..6485254,-#_d183f62348f257d353ae62f498999663p18@SCNN1A
3.49e-24FFCP PHASE1:Hg19::chr12:6485243..6485254,-#_d183f62348f257d353ae62f498999663p18@SCNN1A

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001225&oldid=3277212"