UBERON:0003296: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="A gland that is part of a diencephalon [Obol]." [OBOL:automatic] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0003296 | |||
|is_a=UBERON:0002530 ;;UBERON:0004121 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=gland of diencephalon | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001894 | |part_of=UBERON:0001894 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="between brain gland" EXACT [OBOL:automatic];;"diencephalon gland" EXACT [OBOL:automatic];;"gland of between brain" EXACT [OBOL:automatic];;"gland of interbrain" EXACT [OBOL:automatic];;"gland of mature diencephalon" EXACT [OBOL:automatic];;"interbrain gland" EXACT [OBOL:automatic];;"mature diencephalon gland" EXACT [OBOL:automatic] | ||
|union_of= | |||
|xref=EHDAA2:0000395;;EHDAA:4475;;EMAPA:16646;;EMAPA:16897;;VHOG:0000653 | |||
}} | }} | ||
Latest revision as of 17:39, 12 September 2014
| Name: | gland of diencephalon | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A gland that is part of a diencephalon [Obol]." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Synonyms: |
"between brain gland" EXACT [OBOL:automatic] "diencephalon gland" EXACT [OBOL:automatic] "gland of between brain" EXACT [OBOL:automatic] "gland of interbrain" EXACT [OBOL:automatic] "gland of mature diencephalon" EXACT [OBOL:automatic] "interbrain gland" EXACT [OBOL:automatic] "mature diencephalon gland" EXACT [OBOL:automatic] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002530(gland),UBERON:0004121(ectoderm-derived structure) |
|---|---|
| part_of: | UBERON:0001894(diencephalon) |
Children
| is a: | UBERON:0000007 (pituitary gland),UBERON:0001905 (pineal body) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10160-103A7 (pineal gland, adult, donor10252)
- 10162-103A9 (pituitary gland, adult, donor10252)
- 10179-103C8 (pineal gland - adult, donor10196)
- 10180-103C9 (pituitary gland - adult, donor10196)
- 10377-105G8 (pineal gland, adult, donor10258)
- 10378-105G9 (pituitary gland, adult, donor10258)
- 11649-122E2
- 11726-123D7
- 11744-123F7
- 1265-44F5 (pituitary gland, embryo E17)
... further results Mouse (Mus musculus)
- 10160-103A7 (pineal gland, adult, donor10252)
- 10162-103A9 (pituitary gland, adult, donor10252)
- 10179-103C8 (pineal gland - adult, donor10196)
- 10180-103C9 (pituitary gland - adult, donor10196)
- 10377-105G8 (pineal gland, adult, donor10258)
- 10378-105G9 (pituitary gland, adult, donor10258)
- 11649-122E2
- 11726-123D7
- 11744-123F7
- 1265-44F5 (pituitary gland, embryo E17)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003296 (gland of diencephalon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.57e-195 | FFCP PHASE1:Hg19::chr19:7979708..7979734,+#_041e7e095e0433a5f5e2a2f6abfd85af | p@chr19:7979708..7979734, + |
| 2.57e-195 | FFCP PHASE2:Hg19::chr19:7979708..7979734,+#_041e7e095e0433a5f5e2a2f6abfd85af | p@chr19:7979708..7979734, + |
| 1.0e-156 | FFCP PHASE1:Hg19::chr5:136328571..136328599,-#_a1bc2e9d68446f0c07516434f3605aee | p11@SPOCK1 |
| 1.0e-156 | FFCP PHASE2:Hg19::chr5:136328571..136328599,-#_a1bc2e9d68446f0c07516434f3605aee | p11@SPOCK1 |
| 1.5e-156 | FFCP PHASE2:Hg19::chr12:128210626..128210641,-#_b3480ceef493666046a1c06662b262ce | p@chr12:128210626..128210641, - |
| 1.5e-156 | FFCP PHASE1:Hg19::chr12:128210626..128210641,-#_b3480ceef493666046a1c06662b262ce | p@chr12:128210626..128210641, - |
| 6.94e-147 | FFCP PHASE1:Hg19::chr19:49520344..49520367,-#_3c7fe58ee68581c87674381e7310afbe | p1@LHB |
| 6.94e-147 | FFCP PHASE2:Hg19::chr19:49519930..49519937,-#_3c7fe58ee68581c87674381e7310afbe | p@chr19:49519930..49519937, - |
| 6.94e-147 | FFCP PHASE2:Hg19::chr19:7979644..7979653,+#_3c7fe58ee68581c87674381e7310afbe | p@chr19:7979644..7979653, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr19:7979677..7979703,+#_3c7fe58ee68581c87674381e7310afbe | p@chr19:7979677..7979703, + |
| 6.94e-147 | FFCP PHASE2:Hg19::chr19:49520344..49520367,-#_3c7fe58ee68581c87674381e7310afbe | p1@LHB |
| 6.94e-147 | FFCP PHASE2:Hg19::chr19:7979677..7979703,+#_3c7fe58ee68581c87674381e7310afbe | p@chr19:7979677..7979703, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr19:49519930..49519937,-#_3c7fe58ee68581c87674381e7310afbe | p@chr19:49519930..49519937, - |
| 6.94e-147 | FFCP PHASE1:Hg19::chr19:7979644..7979653,+#_3c7fe58ee68581c87674381e7310afbe | p@chr19:7979644..7979653, + |
| 2.79e-131 | FFCP PHASE1:Hg19::chr1:99693441..99693485,-#_162ecb6a52ab7532e623acb216eb7a11 | p@chr1:99693441..99693485, - |
| 2.79e-131 | FFCP PHASE2:Hg19::chr1:99693441..99693485,-#_162ecb6a52ab7532e623acb216eb7a11 | p@chr1:99693441..99693485, - |
| 1.07e-130 | FFCP PHASE1:Hg19::chr5:133772179..133772191,+#_19e6ecc5ca8f9d9c1a5a6040e217ff51 | p5@ENST00000513329 |
| 1.07e-130 | FFCP PHASE2:Hg19::chr5:133772179..133772191,+#_19e6ecc5ca8f9d9c1a5a6040e217ff51 | p5@ENST00000513329 |
| 1.0e-112 | FFCP PHASE2:Hg19::chr5:141783725..141783734,+#_daffbf8b60612fd06df6d1c34b4f6cf5 | p3@ENST00000443800 |
| 1.0e-112 | FFCP PHASE1:Hg19::chr5:141783725..141783734,+#_daffbf8b60612fd06df6d1c34b4f6cf5 | p3@ENST00000443800 |
| 1.76e-111 | FFCP PHASE1:Hg19::chr9:139096968..139096979,-#_547c296569933891330becae011cbbca | p2@LHX3 |
| 1.76e-111 | FFCP PHASE2:Hg19::chr9:139096968..139096979,-#_547c296569933891330becae011cbbca | p2@LHX3 |
| 8.91e-111 | FFCP PHASE1:Hg19::chr22:47126639..47126654,+#_5ace75054bf71479d5a1fef30ffee88b | p@chr22:47126639..47126654, + |
| 8.91e-111 | FFCP PHASE2:Hg19::chr22:47126639..47126654,+#_5ace75054bf71479d5a1fef30ffee88b | p@chr22:47126639..47126654, + |
| 2.76e-110 | FFCP PHASE2:Hg19::chr11:75194071..75194110,-#_0d9c0c5f5240b6aabfe6064862f91b93 | p@chr11:75194071..75194110, - |
| 2.76e-110 | FFCP PHASE1:Hg19::chr15:71228905..71228915,+#_0d9c0c5f5240b6aabfe6064862f91b93 | p17@LRRC49 |
| 2.76e-110 | FFCP PHASE1:Hg19::chr4:1233005..1233017,+#_0d9c0c5f5240b6aabfe6064862f91b93 | p@chr4:1233005..1233017, + |
| 2.76e-110 | FFCP PHASE2:Hg19::chr4:1233005..1233017,+#_0d9c0c5f5240b6aabfe6064862f91b93 | p@chr4:1233005..1233017, + |
| 2.76e-110 | FFCP PHASE2:Hg19::chr15:71228905..71228915,+#_0d9c0c5f5240b6aabfe6064862f91b93 | p17@LRRC49 |
| 2.76e-110 | FFCP PHASE1:Hg19::chr11:75194071..75194110,-#_0d9c0c5f5240b6aabfe6064862f91b93 | p@chr11:75194071..75194110, - |
| 5.02e-99 | FFCP PHASE2:Hg19::chr12:128210666..128210685,-#_e10f7ee5f323a23152e5a369cbcc8d74 | p@chr12:128210666..128210685, - |
| 5.02e-99 | FFCP PHASE1:Hg19::chr12:128210666..128210685,-#_e10f7ee5f323a23152e5a369cbcc8d74 | p@chr12:128210666..128210685, - |
| 1.38e-98 | FFCP PHASE2:Hg19::chr9:139095116..139095139,+#_09220a7a11d2f7f5871951de837e5d88 | p@chr9:139095116..139095139, + |
| 1.38e-98 | FFCP PHASE1:Hg19::chr9:139095116..139095139,+#_09220a7a11d2f7f5871951de837e5d88 | p@chr9:139095116..139095139, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:61996252..61996253,-#_86c8842de92bb34e78ab840208c7dc62 | p2@GH1, p3@CSHL1 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:22287710..22287718,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr6:22287710..22287718, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr16:50898038..50898042,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr16:50898038..50898042, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr5:134871183..134871197,-#_86c8842de92bb34e78ab840208c7dc62 | p3@NEUROG1 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:44903714..44903719,+#_86c8842de92bb34e78ab840208c7dc62 | p8@CAMKMT |
| 1.55e-98 | FFCP PHASE2:Hg19::chr5:119799539..119799543,+#_86c8842de92bb34e78ab840208c7dc62 | p13@PRR16 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:128170725..128170735,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr3:128170725..128170735, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:9178350..9178369,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr7:9178350..9178369, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr13:56628524..56628547,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr13:56628524..56628547, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:31003593..31003614,+#_86c8842de92bb34e78ab840208c7dc62 | p2@GHRHR |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:100942645..100942655,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr3:100942645..100942655, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr15:47662877..47662880,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr15:47662877..47662880, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:25391815..25391821,-#_86c8842de92bb34e78ab840208c7dc62 | p13@POMC |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:22287647..22287662,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr6:22287647..22287662, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chrX:146290937..146290942,+#_86c8842de92bb34e78ab840208c7dc62 | p@chrX:146290937..146290942, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chrX:54051809..54051811,+#_86c8842de92bb34e78ab840208c7dc62 | p@chrX:54051809..54051811, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr11:18041199..18041200,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr11:18041199..18041200, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr5:119867229..119867240,+#_86c8842de92bb34e78ab840208c7dc62 | p9@PRR16 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:99860753..99860764,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr1:99860753..99860764, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:135504314..135504320,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr8:135504314..135504320, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:31006831..31006834,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr7:31006831..31006834, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr11:18063669..18063678,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr11:18063669..18063678, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:17065916..17065929,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr2:17065916..17065929, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:18041199..18041200,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr11:18041199..18041200, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:100942645..100942655,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr3:100942645..100942655, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:87325636..87325643,-#_86c8842de92bb34e78ab840208c7dc62 | p2@POU1F1 |
| 1.55e-98 | FFCP PHASE1:Hg19::chrX:33146637..33146644,-#_86c8842de92bb34e78ab840208c7dc62 | p35@DMD |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:130017368..130017390,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr8:130017368..130017390, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chrX:146290937..146290942,+#_86c8842de92bb34e78ab840208c7dc62 | p@chrX:146290937..146290942, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr16:51808960..51808964,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr16:51808960..51808964, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:99860753..99860764,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr1:99860753..99860764, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:49621641..49621650,+#_86c8842de92bb34e78ab840208c7dc62 | p22@TUBA1C |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:135473983..135473986,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr8:135473983..135473986, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:44903714..44903719,+#_86c8842de92bb34e78ab840208c7dc62 | p8@CAMKMT |
| 1.55e-98 | FFCP PHASE1:Hg19::chr18:56962131..56962138,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr18:56962131..56962138, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:61995704..61995739,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr17:61995704..61995739, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:87325636..87325643,-#_86c8842de92bb34e78ab840208c7dc62 | p2@POU1F1 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:204667243..204667248,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr1:204667243..204667248, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chrX:33146637..33146644,-#_86c8842de92bb34e78ab840208c7dc62 | p35@DMD |
| 1.55e-98 | FFCP PHASE2:Hg19::chr10:18580269..18580290,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr10:18580269..18580290, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:18063707..18063720,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr11:18063707..18063720, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr17:61996160..61996176,-#_86c8842de92bb34e78ab840208c7dc62 | p3@GH1 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr5:136699666..136699696,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr5:136699666..136699696, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:48705144..48705150,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr2:48705144..48705150, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:9228468..9228494,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr7:9228468..9228494, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:135522475..135522486,-#_86c8842de92bb34e78ab840208c7dc62 | p16@ZFAT |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:72297717..72297725,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr11:72297717..72297725, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:22290499..22290506,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr6:22290499..22290506, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr5:136328601..136328607,-#_86c8842de92bb34e78ab840208c7dc62 | p25@SPOCK1 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:61994760..61994767,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr17:61994760..61994767, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr19:49519519..49519562,-#_86c8842de92bb34e78ab840208c7dc62 | p2@CU678753 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:135473063..135473075,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr8:135473063..135473075, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr17:61995432..61995458,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr17:61995432..61995458, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:48705144..48705150,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr2:48705144..48705150, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:22287787..22287798,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr6:22287787..22287798, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr11:70178863..70178874,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr11:70178863..70178874, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:135504353..135504365,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr8:135504353..135504365, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:22287728..22287735,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr6:22287728..22287735, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr16:18036005..18036011,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr16:18036005..18036011, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:107844170..107844179,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr8:107844170..107844179, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:204667243..204667248,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr1:204667243..204667248, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:1352813..1352818,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr4:1352813..1352818, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:9178561..9178568,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr7:9178561..9178568, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:135515957..135515964,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr8:135515957..135515964, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr11:18067959..18067962,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr11:18067959..18067962, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:87755845..87755852,-#_86c8842de92bb34e78ab840208c7dc62 | p6@CNGB3 |
