UBERON:0000064: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="anatomical structure which has as its direct parts two or more types of tissue and is continuous with one or more anatomical structures likewise constituted by two or more portions of tissues distinct from those of their complement. Examples: osteon, cortical bone, neck of femur, bronchopulmonary segment, left lobe of liver, anterior right side of heart, interventricular branch of left coronary artery, right atrium, mitral valve, head of pancreas[FMA]." [FMA:82472] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0000064 | |||
|is_a=UBERON:0010000 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=organ part | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000062 | |part_of=UBERON:0000062 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=disjointness_axiom_removed;;upper_level | ||
| | |synonym="cardinal organ part" EXACT [] | ||
|union_of= | |||
|xref=EFO:0000635;;FMA:82472;;SCTID:91717005 | |||
}} | }} | ||
Latest revision as of 17:05, 12 September 2014
| Name: | organ part | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "anatomical structure which has as its direct parts two or more types of tissue and is continuous with one or more anatomical structures likewise constituted by two or more portions of tissues distinct from those of their complement. Examples: osteon, cortical bone, neck of femur, bronchopulmonary segment, left lobe of liver, anterior right side of heart, interventricular branch of left coronary artery, right atrium, mitral valve, head of pancreas[FMA]." [FMA:82472] | ||
| Xrefs: |
| ||
| Synonyms: | "cardinal organ part" EXACT [] | ||
| Subset: |
disjointness_axiom_removed upper_level |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0010000(multicellular anatomical structure) |
|---|---|
| part_of: | UBERON:0000062(organ) |
Children
| is a: | UBERON:0000006 (islet of Langerhans),UBERON:0000014 (zone of skin),UBERON:0000060 (anatomical wall),UBERON:0000063 (organ segment),UBERON:0000074 (renal glomerulus),UBERON:0000101 (lobe of lung),UBERON:0000200 (gyrus),UBERON:0000353 (parenchyma),UBERON:0000415 (artery wall),UBERON:0000454 (cerebral subcortex),UBERON:0001171 (portal lobule),UBERON:0001178 (visceral peritoneum),UBERON:0001230 (glomerular capsule),UBERON:0001285 (nephron),UBERON:0001560 (neck of organ),UBERON:0001726 (papilla of tongue),UBERON:0001851 (cortex),UBERON:0001869 (cerebral hemisphere),UBERON:0001896 (medulla oblongata),UBERON:0002022 (insula),UBERON:0002073 (hair follicle),UBERON:0002196 (adenohypophysis),UBERON:0002259 (corpora quadrigemina),UBERON:0002499 (cochlear labyrinth),UBERON:0003023 (pontine tegmentum),UBERON:0003215 (alveolus),UBERON:0003891 (stroma),UBERON:0003978 (valve),UBERON:0004151 (cardiac chamber),UBERON:0004647 (liver lobule),UBERON:0004923 (organ component layer),UBERON:0005358 (ventricle of nervous system),UBERON:0005389 (transparent eye structure),UBERON:0005749 (glomerular tuft),UBERON:0005913 (zone of bone organ),UBERON:0006003 (integumentary adnexa),UBERON:0006311 (chamber of eyeball),UBERON:0009034 (stomach region),UBERON:0009471 (dorsum of tongue),UBERON:0009842 (acinus),UBERON:0009911 (lobule),UBERON:0013522 (subdivision of tube),UBERON:0016526 (lobe of cerebral hemisphere) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10013-101C4 (cervix, adult, pool1)
- 10014-101C5 (colon, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10030-101E3 (retina, adult, pool1)
- 10031-101E4 (temporal lobe, adult, pool1)
- 10032-101E5 (postcentral gyrus, adult, pool1)
- 10033-101E6 (pons, adult, pool1)
- 10034-101E7 (parietal lobe, adult, pool1)
- 10035-101E8 (paracentral gyrus, adult, pool1)
- 10036-101E9 (occipital pole, adult, pool1)
... further results Mouse (Mus musculus)
- 10013-101C4 (cervix, adult, pool1)
- 10014-101C5 (colon, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10030-101E3 (retina, adult, pool1)
- 10031-101E4 (temporal lobe, adult, pool1)
- 10032-101E5 (postcentral gyrus, adult, pool1)
- 10033-101E6 (pons, adult, pool1)
- 10034-101E7 (parietal lobe, adult, pool1)
- 10035-101E8 (paracentral gyrus, adult, pool1)
- 10036-101E9 (occipital pole, adult, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000064 (organ part), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results
