FFCP PHASE1:Hg19::chr5:36686650..36686662,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6507 | |EntrezGene=6507 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=10941 | |HGNC=10941 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=48bp_to_AF070609_5end | |association_with_transcript=48bp_to_AF070609_5end | ||
|cluster_id=chr5:36686650..36686662,+ | |||
|coexpression_cluster_id=C16 | |coexpression_cluster_id=C16 | ||
|description=CAGE_peak_20_at_SLC1A3_5end | |description=CAGE_peak_20_at_SLC1A3_5end | ||
|id=chr5:36686650..36686662,+ | |id=chr5:36686650..36686662,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000135;1.21e-08;3!CL:0000388;1.21e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000135,1.40e-08,3;CL:0000388,1.40e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0010122;2.59e-12;2!UBERON:0006215;1.21e-08;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!4.36e-44!57;UBERON:0005068!4.36e-44!57;UBERON:0006241!4.36e-44!57;UBERON:0007135!4.36e-44!57;UBERON:0001017!2.55e-40!82;UBERON:0005743!5.46e-38!86;UBERON:0002020!2.82e-37!34;UBERON:0003528!2.82e-37!34;UBERON:0001893!9.86e-37!34;UBERON:0002616!1.11e-36!59;UBERON:0002791!7.34e-35!33;UBERON:0000955!4.13e-34!69;UBERON:0006238!4.13e-34!69;UBERON:0000073!1.87e-33!94;UBERON:0001016!1.87e-33!94;UBERON:0001869!1.86e-32!32;UBERON:0002780!2.61e-32!41;UBERON:0001890!2.61e-32!41;UBERON:0006240!2.61e-32!41;UBERON:0003080!2.14e-31!42;UBERON:0003075!8.25e-30!86;UBERON:0007284!8.25e-30!86;UBERON:0002346!4.54e-28!90;UBERON:0000956!3.30e-24!25;UBERON:0000203!3.30e-24!25;UBERON:0000033!7.19e-22!123;UBERON:0002619!1.71e-21!22;UBERON:0003056!1.80e-21!61;UBERON:0000153!2.12e-20!129;UBERON:0007811!2.12e-20!129;UBERON:0004121!1.93e-18!169;UBERON:0000924!9.08e-18!173;UBERON:0006601!9.08e-18!173;UBERON:0007023!1.44e-17!115;UBERON:0001950!3.71e-17!20;UBERON:0002420!2.70e-15!9;UBERON:0007245!2.70e-15!9;UBERON:0010009!2.70e-15!9;UBERON:0010011!2.70e-15!9;UBERON:0000454!2.70e-15!9;UBERON:0000349!4.91e-15!5;UBERON:0002308!6.43e-15!9;UBERON:0000125!6.43e-15!9;UBERON:0003076!1.56e-13!15;UBERON:0003057!1.56e-13!15;UBERON:0000064!7.34e-12!219;UBERON:0002680!1.41e-10!9;UBERON:0001895!1.41e-10!9;UBERON:0010092!1.41e-10!9;UBERON:0004733!1.85e-10!12;UBERON:0002028!1.85e-10!12;UBERON:0007277!1.85e-10!12;UBERON:0009663!2.88e-10!7;UBERON:0004732!1.44e-09!13;UBERON:0006331!2.60e-09!3;UBERON:0001872!3.45e-09!5;UBERON:0000025!4.74e-09!194;UBERON:0000988!1.17e-08!3;UBERON:0002298!1.80e-08!8;UBERON:0000200!1.33e-07!6;UBERON:0000477!2.09e-07!286;UBERON:0004111!2.42e-07!241;UBERON:0001876!3.63e-07!2;UBERON:0001954!4.20e-07!2;UBERON:0003022!4.20e-07!2;UBERON:0002421!4.20e-07!2;UBERON:0002600!4.20e-07!2;UBERON:0000369!6.13e-07!4;UBERON:0002435!6.13e-07!4;UBERON:0000204!6.13e-07!4;UBERON:0010082!6.13e-07!4 | |ontology_enrichment_uberon=UBERON:0001049!4.36e-44!57;UBERON:0005068!4.36e-44!57;UBERON:0006241!4.36e-44!57;UBERON:0007135!4.36e-44!57;UBERON:0001017!2.55e-40!82;UBERON:0005743!5.46e-38!86;UBERON:0002020!2.82e-37!34;UBERON:0003528!2.82e-37!34;UBERON:0001893!9.86e-37!34;UBERON:0002616!1.11e-36!59;UBERON:0002791!7.34e-35!33;UBERON:0000955!4.13e-34!69;UBERON:0006238!4.13e-34!69;UBERON:0000073!1.87e-33!94;UBERON:0001016!1.87e-33!94;UBERON:0001869!1.86e-32!32;UBERON:0002780!2.61e-32!41;UBERON:0001890!2.61e-32!41;UBERON:0006240!2.61e-32!41;UBERON:0003080!2.14e-31!42;UBERON:0003075!8.25e-30!86;UBERON:0007284!8.25e-30!86;UBERON:0002346!4.54e-28!90;UBERON:0000956!3.30e-24!25;UBERON:0000203!3.30e-24!25;UBERON:0000033!7.19e-22!123;UBERON:0002619!1.71e-21!22;UBERON:0003056!1.80e-21!61;UBERON:0000153!2.12e-20!129;UBERON:0007811!2.12e-20!129;UBERON:0004121!1.93e-18!169;UBERON:0000924!9.08e-18!173;UBERON:0006601!9.08e-18!173;UBERON:0007023!1.44e-17!115;UBERON:0001950!3.71e-17!20;UBERON:0002420!2.70e-15!9;UBERON:0007245!2.70e-15!9;UBERON:0010009!2.70e-15!9;UBERON:0010011!2.70e-15!9;UBERON:0000454!2.70e-15!9;UBERON:0000349!4.91e-15!5;UBERON:0002308!6.43e-15!9;UBERON:0000125!6.43e-15!9;UBERON:0003076!1.56e-13!15;UBERON:0003057!1.56e-13!15;UBERON:0000064!7.34e-12!219;UBERON:0002680!1.41e-10!9;UBERON:0001895!1.41e-10!9;UBERON:0010092!1.41e-10!9;UBERON:0004733!1.85e-10!12;UBERON:0002028!1.85e-10!12;UBERON:0007277!1.85e-10!12;UBERON:0009663!2.88e-10!7;UBERON:0004732!1.44e-09!13;UBERON:0006331!2.60e-09!3;UBERON:0001872!3.45e-09!5;UBERON:0000025!4.74e-09!194;UBERON:0000988!1.17e-08!3;UBERON:0002298!1.80e-08!8;UBERON:0000200!1.33e-07!6;UBERON:0000477!2.09e-07!286;UBERON:0004111!2.42e-07!241;UBERON:0001876!3.63e-07!2;UBERON:0001954!4.20e-07!2;UBERON:0003022!4.20e-07!2;UBERON:0002421!4.20e-07!2;UBERON:0002600!4.20e-07!2;UBERON:0000369!6.13e-07!4;UBERON:0002435!6.13e-07!4;UBERON:0000204!6.13e-07!4;UBERON:0010082!6.13e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0002791;1.19e-22;32!UBERON:0001869;1.19e-22;32!UBERON:0002420;1.46e-22;9!UBERON:0007245;1.46e-22;9!UBERON:0010009;1.46e-22;9!UBERON:0010011;1.46e-22;9!UBERON:0000454;1.46e-22;9!UBERON:0001893;8.31e-20;34!UBERON:0001950;2.81e-17;20!UBERON:0003528;8.51e-17;34!UBERON:0002020;8.51e-17;34!UBERON:0002619;8.13e-16;22!UBERON:0000200;9.04e-16;6!UBERON:0000956;4.81e-14;25!UBERON:0000203;4.81e-14;25!UBERON:0002780;9.72e-14;41!UBERON:0001890;9.72e-14;41!UBERON:0001871;1.15e-13;6!UBERON:0009663;1.58e-13;7!UBERON:0002771;1.48e-12;2!UBERON:0001876;2.59e-12;2!UBERON:0001873;2.59e-12;2!UBERON:0006562;2.59e-12;2!UBERON:0002702;2.59e-12;2!UBERON:0001875;2.59e-12;2!UBERON:0006514;2.59e-12;2!UBERON:0000955;7.07e-12;68!UBERON:0000125;9.69e-11;9!UBERON:0002308;9.69e-11;9!UBERON:0001017;6.61e-10;75!UBERON:0000073;7.28e-10;53!UBERON:0002616;7.28e-10;53!UBERON:0001870;1.21e-08;3!UBERON:0007846;1.21e-08;3!UBERON:0000043;1.21e-08;3!UBERON:0007845;1.21e-08;3!UBERON:0005383;1.21e-08;3!UBERON:0005382;1.21e-08;3!UBERON:0001016;7.03e-07;83!UBERON:0000369;8.61e-07;4!UBERON:0002435;8.61e-07;4!UBERON:0000204;8.61e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002791,5.04e-24,32;UBERON:0001869,5.04e-24,32;UBERON:0003528,1.16e-22,34;UBERON:0002020,1.16e-22,34;UBERON:0001893,1.16e-22,34;UBERON:0002420,1.46e-22,9;UBERON:0007245,1.46e-22,9;UBERON:0010009,1.46e-22,9;UBERON:0010011,1.46e-22,9;UBERON:0000454,1.46e-22,9;UBERON:0000073,6.87e-20,53;UBERON:0002616,6.87e-20,53;UBERON:0002780,6.62e-19,41;UBERON:0001890,6.62e-19,41;UBERON:0003080,6.62e-19,41;UBERON:0006240,6.62e-19,41;UBERON:0001049,7.66e-19,56;UBERON:0005068,7.66e-19,56;UBERON:0006241,7.66e-19,56;UBERON:0007135,7.66e-19,56;UBERON:0001950,2.59e-17,20;UBERON:0002619,7.53e-16,22;UBERON:0000200,9.74e-16,6;UBERON:0000955,2.47e-15,68;UBERON:0006238,2.47e-15,68;UBERON:0000956,4.50e-14,25;UBERON:0000203,4.50e-14,25;UBERON:0001871,9.53e-14,6;UBERON:0009663,1.91e-13,7;UBERON:0001017,6.44e-13,81;UBERON:0003075,6.44e-13,82;UBERON:0007284,6.44e-13,82;UBERON:0003056,7.93e-13,61;UBERON:0002771,1.48e-12,2;UBERON:0001876,1.85e-12,2;UBERON:0002346,2.56e-12,86;UBERON:0001875,2.59e-12,2;UBERON:0006514,2.59e-12,2;UBERON:0002702,2.90e-12,2;UBERON:0001873,3.62e-12,2;UBERON:0010122,3.62e-12,2;UBERON:0001016,1.22e-11,89;UBERON:0000125,1.12e-10,9;UBERON:0002308,1.12e-10,9;UBERON:0010371,3.51e-10,104;UBERON:0001870,1.30e-08,3;UBERON:0007846,1.40e-08,3;UBERON:0000043,1.40e-08,3;UBERON:0007845,1.40e-08,3;UBERON:0005383,1.51e-08,3;UBERON:0005382,1.51e-08,3;UBERON:0010314,5.40e-08,132;UBERON:0007023,5.78e-07,114 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0.515151135268373,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0.245668634623536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0.76228387266739,0,0,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0.670302275535787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9882952955326,0.703347082052564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.463840490809256,0,0,0,0,0.1137934482855,0,0,0,0,0,0,1.08536794762867,1.52581736317083,0.110579259931225,0.886642856860642,0,0,0.139423744278603,0,0.227884111694002,0,0.179515288819544,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126621591911757,0.195551382734803,0,0,0.39961921916426,0,0,0,0,0,0,0,0,0,0,1.20084057741958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.953423842781029,0,0.137539436597234,0,0,0,0.182248669974074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.39669780522807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.39294553647067,1.1267183763585,0,0.332787154610557,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0.319267718114302,2.05116364240755,0,0,0.645902582527404,0,0.0981477185010256,0,0,0.115525666150338,0,0,0,0,0,0,0.261906694481422,0,0,0.0675375846183947,0,0.826747186004736,0.19024743058172,0.546974809018219,0,0,0,1.40538670403555,0,0,0,0,0,0,0,0.0679697329768317,0.131545547125698,0,0,0,0.157115589916002,0,0,0,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0,0,0,0,0,0,0.392616934229891,0,0.4226557275834,0,0.0939839179798536,0,0,0,0,0,0,0,0.573358332605805,0,0,0.436350690340377,0,1.11598505450025,0,0,0,0,0,0.101988829741982,0,0,0.250707539292375,0,0,0,0.20686599172379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0.515151135268373,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0.245668634623536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0.76228387266739,0,0,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0.670302275535787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9882952955326,0.703347082052564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.463840490809256,0,0,0,0,0.1137934482855,0,0,0,0,0,0,1.08536794762867,1.52581736317083,0.110579259931225,0.886642856860642,0,0,0.139423744278603,0,0.227884111694002,0,0.179515288819544,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126621591911757,0.195551382734803,0,0,0.39961921916426,0,0,0,0,0,0,0,0,0,0,1.20084057741958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.953423842781029,0,0.137539436597234,0,0,0,0.182248669974074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.39669780522807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.39294553647067,1.1267183763585,0,0.332787154610557,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0.319267718114302,2.05116364240755,0,0,0.645902582527404,0,0.0981477185010256,0,0,0.115525666150338,0,0,0,0,0,0,0.261906694481422,0,0,0.0675375846183947,0,0.826747186004736,0.19024743058172,0.546974809018219,0,0,0,1.40538670403555,0,0,0,0,0,0,0,0.0679697329768317,0.131545547125698,0,0,0,0.157115589916002,0,0,0,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0,0,0,0,0,0,0.392616934229891,0,0.4226557275834,0,0.0939839179798536,0,0,0,0,0,0,0,0.573358332605805,0,0,0.436350690340377,0,1.11598505450025,0,0,0,0,0,0.101988829741982,0,0,0.250707539292375,0,0,0,0.20686599172379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p20@SLC1A3 | |short_description=p20@SLC1A3 | ||
}} | }} |
Latest revision as of 19:37, 17 September 2015
Short description: | p20@SLC1A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_SLC1A3_5end |
Coexpression cluster: | C16_medial_amygdala_occipital_parietal_olfactory_putamen_brain |
Association with transcript: | 48bp_to_AF070609_5end |
EntrezGene: | SLC1A3 |
HGNC: | 10941 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibrocyte | 1.40e-08 | 3 |
tendon cell | 1.40e-08 | 3 |