FFCP PHASE1:Hg19::chr4:109088863..109088887,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51176 | |EntrezGene=51176 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6551 | |HGNC=6551 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-113bp_to_ENST00000504775_5end | |association_with_transcript=-113bp_to_ENST00000504775_5end | ||
|cluster_id=chr4:109088863..109088887,- | |||
|coexpression_cluster_id=C921 | |coexpression_cluster_id=C921 | ||
|description=CAGE_peak_24_at_LEF1_5end | |description=CAGE_peak_24_at_LEF1_5end | ||
|id=chr4:109088863..109088887,- | |id=chr4:109088863..109088887,- | ||
|ontology_enrichment_celltype=CL:0000791!5.05e-19!18;CL:0000789!5.05e-19!18;CL:0002420!5.05e-19!18;CL:0002419!5.05e-19!18;CL:0000790!5.05e-19!18;CL:0000084!9.57e-18!25;CL:0000827!9.57e-18!25;CL:0000625!1.03e-13!11;CL:0000542!3.40e-13!53;CL:0000051!3.40e-13!53;CL:0000838!1.99e-12!52;CL:0000624!2.00e-08!6 | |ontology_enrichment_celltype=CL:0000791!5.05e-19!18;CL:0000789!5.05e-19!18;CL:0002420!5.05e-19!18;CL:0002419!5.05e-19!18;CL:0000790!5.05e-19!18;CL:0000084!9.57e-18!25;CL:0000827!9.57e-18!25;CL:0000625!1.03e-13!11;CL:0000542!3.40e-13!53;CL:0000051!3.40e-13!53;CL:0000838!1.99e-12!52;CL:0000624!2.00e-08!6 | ||
|ontology_enrichment_celltype_v019=CL:0000084;7.20e-40;25!CL:0000791;8.73e-36;18!CL:0000789;8.73e-36;18!CL:0002419;8.73e-36;18!CL:0000625;1.87e-20;11!CL:0000624;6.51e-20;6!CL:0000542;5.73e-14;53!CL:0000898;3.00e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,2.65e-39,25;CL:0000827,2.65e-39,25;CL:0000791,2.69e-35,18;CL:0000789,2.69e-35,18;CL:0002420,2.69e-35,18;CL:0002419,2.69e-35,18;CL:0000790,2.69e-35,18;CL:0000838,1.86e-25,52;CL:0000542,6.72e-25,53;CL:0000051,6.72e-25,53;CL:0000625,3.44e-20,11;CL:0000624,1.20e-19,6;CL:0002087,1.62e-10,115;CL:0000037,8.85e-10,168;CL:0000738,1.97e-09,136;CL:0000988,4.94e-09,177;CL:0002031,1.14e-08,120;CL:0002032,3.29e-08,161;CL:0000837,3.29e-08,161;CL:0000817,2.06e-07,3;CL:0000898,5.47e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;8.73e-36;18!CL:0000051;5.73e-14;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0060058;6.22e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,2.73e-09,51;DOID:0060083,2.73e-09,51;DOID:0060058,6.54e-08,10 | |||
|ontology_enrichment_uberon=UBERON:0000178!3.58e-08!15;UBERON:0000179!3.58e-08!15;UBERON:0000463!3.58e-08!15 | |ontology_enrichment_uberon=UBERON:0000178!3.58e-08!15;UBERON:0000179!3.58e-08!15;UBERON:0000463!3.58e-08!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;5.44e-11;2!UBERON:0005058;5.44e-11;2!UBERON:0009113;5.44e-11;2!UBERON:0004177;2.11e-09;5!UBERON:0005057;2.11e-09;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.23e-11,4;UBERON:0005058,1.23e-11,4;UBERON:0009113,1.23e-11,4;UBERON:0003295,1.23e-11,4;UBERON:0005562,1.23e-11,4;UBERON:0004177,3.65e-11,7;UBERON:0005057,3.65e-11,7;UBERON:0003351,6.65e-08,6 | |||
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| ||
|short_description=p24@LEF1 | |short_description=p24@LEF1 | ||
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Latest revision as of 15:00, 24 September 2015
Short description: | p24@LEF1 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_24_at_LEF1_5end |
Coexpression cluster: | C921_chronic_thymus_CD4_acute_CD8_Hodgkin_Peripheral |
Association with transcript: | -113bp_to_ENST00000504775_5end |
EntrezGene: | LEF1 |
HGNC: | 6551 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 2.65e-39 | 25 |
pro-T cell | 2.65e-39 | 25 |
mature alpha-beta T cell | 2.69e-35 | 18 |
alpha-beta T cell | 2.69e-35 | 18 |
immature T cell | 2.69e-35 | 18 |
mature T cell | 2.69e-35 | 18 |
immature alpha-beta T cell | 2.69e-35 | 18 |
lymphoid lineage restricted progenitor cell | 1.86e-25 | 52 |
lymphocyte | 6.72e-25 | 53 |
common lymphoid progenitor | 6.72e-25 | 53 |
CD8-positive, alpha-beta T cell | 3.44e-20 | 11 |
CD4-positive, alpha-beta T cell | 1.20e-19 | 6 |
nongranular leukocyte | 1.62e-10 | 115 |
hematopoietic stem cell | 8.85e-10 | 168 |
leukocyte | 1.97e-09 | 136 |
hematopoietic cell | 4.94e-09 | 177 |
hematopoietic lineage restricted progenitor cell | 1.14e-08 | 120 |
hematopoietic oligopotent progenitor cell | 3.29e-08 | 161 |
hematopoietic multipotent progenitor cell | 3.29e-08 | 161 |
precursor B cell | 2.06e-07 | 3 |
naive T cell | 5.47e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.23e-11 | 4 |
hemolymphoid system gland | 1.23e-11 | 4 |
thymic region | 1.23e-11 | 4 |
pharyngeal gland | 1.23e-11 | 4 |
thymus primordium | 1.23e-11 | 4 |
hemopoietic organ | 3.65e-11 | 7 |
immune organ | 3.65e-11 | 7 |
pharyngeal epithelium | 6.65e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 2.73e-09 | 51 |
immune system cancer | 2.73e-09 | 51 |
lymphoma | 6.54e-08 | 10 |