FFCP PHASE1:Hg19::chr2:21231879..21231902,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=338 | |EntrezGene=338 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=603 | |HGNC=603 | ||
|TSSclassifier=strong | |||
|UniProt=Q13789 | |UniProt=Q13789 | ||
|association_with_transcript=-363bp_to_X03324_5end | |association_with_transcript=-363bp_to_X03324_5end | ||
|cluster_id=chr2:21231879..21231902,- | |||
|coexpression_cluster_id=C5 | |coexpression_cluster_id=C5 | ||
|description=CAGE_peak_20_at_APOB_5end | |description=CAGE_peak_20_at_APOB_5end | ||
|id=chr2:21231879..21231902,- | |id=chr2:21231879..21231902,- | ||
|ontology_enrichment_celltype=CL:0000181!2.54e-48!12;CL:0000417!2.54e-48!12;CL:0000668!2.54e-48!12;CL:0000414!2.54e-48!12;CL:0000412!2.54e-48!12;CL:0000182!2.54e-48!12;CL:0000223!2.15e-11!59 | |ontology_enrichment_celltype=CL:0000181!2.54e-48!12;CL:0000417!2.54e-48!12;CL:0000668!2.54e-48!12;CL:0000414!2.54e-48!12;CL:0000412!2.54e-48!12;CL:0000182!2.54e-48!12;CL:0000223!2.15e-11!59 | ||
|ontology_enrichment_celltype_v019=CL:0000182;8.81e-58;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,7.45e-58,12;CL:0000223,1.18e-11,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;4.83e-46;11!UBERON:0009497;5.89e-39;13!UBERON:0001041;8.28e-17;30!UBERON:0003104;2.58e-16;31!CL:0000223;5.03e-08;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!4.24e-47!19;UBERON:0006925!4.24e-47!19;UBERON:0008836!4.24e-47!19;UBERON:0005057!5.27e-41!26;UBERON:0008835!1.72e-40!22;UBERON:0003894!1.72e-40!22;UBERON:0009854!1.14e-38!23;UBERON:0007499!1.82e-35!25;UBERON:0009497!1.82e-35!25;UBERON:0000015!1.82e-35!25;UBERON:0002423!1.82e-35!25;UBERON:0006235!1.82e-35!25;UBERON:0004161!1.82e-35!25;UBERON:0009856!4.76e-34!26;UBERON:0002365!2.50e-28!31;UBERON:0002330!2.50e-28!31;UBERON:0002368!6.30e-25!35;UBERON:0000949!4.61e-19!45;UBERON:0003929!6.61e-19!54;UBERON:0005172!1.65e-18!55;UBERON:0005173!1.65e-18!55;UBERON:0004921!1.64e-17!129;UBERON:0004185!1.64e-17!129;UBERON:0002530!3.70e-17!59;UBERON:0002417!1.61e-16!61;UBERON:0000916!1.61e-16!61;UBERON:0001007!3.96e-14!155;UBERON:0001555!3.96e-14!155;UBERON:0007026!3.96e-14!155;UBERON:0004119!9.84e-13!169;UBERON:0000925!9.84e-13!169;UBERON:0006595!9.84e-13!169;UBERON:0005911!7.36e-12!82;UBERON:0009569!1.54e-11!113;UBERON:0001041!1.58e-11!98;UBERON:0005177!2.16e-10!107;UBERON:0006122!2.74e-10!1;UBERON:0000077!9.82e-10!130;UBERON:0000466!1.58e-08!126;UBERON:0002405!7.37e-08!115 | |ontology_enrichment_uberon=UBERON:0002107!4.24e-47!19;UBERON:0006925!4.24e-47!19;UBERON:0008836!4.24e-47!19;UBERON:0005057!5.27e-41!26;UBERON:0008835!1.72e-40!22;UBERON:0003894!1.72e-40!22;UBERON:0009854!1.14e-38!23;UBERON:0007499!1.82e-35!25;UBERON:0009497!1.82e-35!25;UBERON:0000015!1.82e-35!25;UBERON:0002423!1.82e-35!25;UBERON:0006235!1.82e-35!25;UBERON:0004161!1.82e-35!25;UBERON:0009856!4.76e-34!26;UBERON:0002365!2.50e-28!31;UBERON:0002330!2.50e-28!31;UBERON:0002368!6.30e-25!35;UBERON:0000949!4.61e-19!45;UBERON:0003929!6.61e-19!54;UBERON:0005172!1.65e-18!55;UBERON:0005173!1.65e-18!55;UBERON:0004921!1.64e-17!129;UBERON:0004185!1.64e-17!129;UBERON:0002530!3.70e-17!59;UBERON:0002417!1.61e-16!61;UBERON:0000916!1.61e-16!61;UBERON:0001007!3.96e-14!155;UBERON:0001555!3.96e-14!155;UBERON:0007026!3.96e-14!155;UBERON:0004119!9.84e-13!169;UBERON:0000925!9.84e-13!169;UBERON:0006595!9.84e-13!169;UBERON:0005911!7.36e-12!82;UBERON:0009569!1.54e-11!113;UBERON:0001041!1.58e-11!98;UBERON:0005177!2.16e-10!107;UBERON:0006122!2.74e-10!1;UBERON:0000077!9.82e-10!130;UBERON:0000466!1.58e-08!126;UBERON:0002405!7.37e-08!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;8.53e-60;19!UBERON:0006925;8.53e-60;19!UBERON:0002423;2.66e-45;25!UBERON:0002365;2.68e-35;31!UBERON:0002330;2.68e-35;31!UBERON:0002368;6.16e-31;33!UBERON:0000949;3.62e-22;43!UBERON:0005172;1.57e-13;52!UBERON:0005173;1.57e-13;52!UBERON:0002417;1.53e-12;58!UBERON:0000916;1.53e-12;58!UBERON:0002108;2.67e-12;4!UBERON:0002530;4.82e-11;57!UBERON:0001007;4.86e-10;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,7.70e-60,19;UBERON:0006925,7.70e-60,19;UBERON:0008836,7.70e-60,19;UBERON:0008835,1.34e-51,22;UBERON:0003894,1.34e-51,22;UBERON:0009854,2.49e-49,23;UBERON:0007499,2.47e-45,25;UBERON:0009497,2.47e-45,25;UBERON:0000015,2.47e-45,25;UBERON:0002423,2.47e-45,25;UBERON:0006235,2.47e-45,25;UBERON:0004161,2.47e-45,25;UBERON:0009856,1.45e-43,26;UBERON:0002365,1.96e-36,31;UBERON:0002330,1.96e-36,31;UBERON:0002368,3.43e-32,35;UBERON:0000949,7.08e-25,45;UBERON:0003929,1.33e-20,54;UBERON:0005172,1.33e-20,54;UBERON:0005173,1.33e-20,54;UBERON:0002530,8.69e-19,59;UBERON:0002417,1.84e-18,60;UBERON:0000916,1.84e-18,60;UBERON:0004921,2.23e-13,118;UBERON:0005911,2.80e-13,82;UBERON:0001041,1.82e-12,87;UBERON:0002108,2.99e-12,4;UBERON:0001007,1.11e-10,145;UBERON:0001555,1.11e-10,145;UBERON:0007026,1.11e-10,145;UBERON:0005177,1.30e-10,101;UBERON:0004119,1.43e-09,160;UBERON:0000925,1.43e-09,160;UBERON:0006595,1.43e-09,160;UBERON:0009569,1.78e-09,112;UBERON:0003914,4.95e-09,117;UBERON:0005256,1.27e-08,122;UBERON:0011216,9.33e-08,223;UBERON:0000490,6.19e-07,148 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.7457048750563,16.7080626835196,9.45263850690247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.95777922130672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41215701165169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.973033209536731,0.611030144933625,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.49487848582361,3.86037593305396,3.37905019362782,3.84200199968854,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.6983130585,1.32506888912221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.46957305945423,3.27839340755936,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.7457048750563,16.7080626835196,9.45263850690247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.95777922130672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41215701165169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.973033209536731,0.611030144933625,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.49487848582361,3.86037593305396,3.37905019362782,3.84200199968854,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.6983130585,1.32506888912221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.46957305945423,3.27839340755936,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p20@APOB | |short_description=p20@APOB | ||
}} | }} |
Latest revision as of 23:19, 19 September 2015
Short description: | p20@APOB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_APOB_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -363bp_to_X03324_5end |
EntrezGene: | APOB |
HGNC: | 603 |
UniProt: | Q13789 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 7.45e-58 | 12 |
endodermal cell | 1.18e-11 | 58 |