FFCP PHASE1:Hg19::chr21:47545788..47545804,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1292 | |EntrezGene=1292 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=2212 | |HGNC=2212 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-92bp_to_AL360197_5end | |association_with_transcript=-92bp_to_AL360197_5end | ||
|cluster_id=chr21:47545788..47545804,+ | |||
|coexpression_cluster_id=C198 | |coexpression_cluster_id=C198 | ||
|description=CAGE_peak_42_at_COL6A2_5end | |description=CAGE_peak_42_at_COL6A2_5end | ||
|id=chr21:47545788..47545804,+ | |id=chr21:47545788..47545804,+ | ||
|ontology_enrichment_celltype=CL:0000055!2.33e-35!180;CL:0000057!3.13e-22!75;CL:0000680!8.96e-15!57;CL:0000056!8.96e-15!57;CL:0000355!8.96e-15!57;CL:0000187!1.24e-13!54;CL:0000183!2.49e-13!59;CL:0000048!1.17e-12!430;CL:0000723!7.22e-12!436;CL:0000393!1.17e-11!60;CL:0000211!1.17e-11!60;CL:0000192!1.75e-11!42;CL:0000514!1.75e-11!42;CL:0002620!2.99e-11!23;CL:0000034!3.58e-11!444;CL:0000359!1.12e-09!32;CL:0000499!2.16e-08!27;CL:0002371!2.34e-07!591 | |ontology_enrichment_celltype=CL:0000055!2.33e-35!180;CL:0000057!3.13e-22!75;CL:0000680!8.96e-15!57;CL:0000056!8.96e-15!57;CL:0000355!8.96e-15!57;CL:0000187!1.24e-13!54;CL:0000183!2.49e-13!59;CL:0000048!1.17e-12!430;CL:0000723!7.22e-12!436;CL:0000393!1.17e-11!60;CL:0000211!1.17e-11!60;CL:0000192!1.75e-11!42;CL:0000514!1.75e-11!42;CL:0002620!2.99e-11!23;CL:0000034!3.58e-11!444;CL:0000359!1.12e-09!32;CL:0000499!2.16e-08!27;CL:0002371!2.34e-07!591 | ||
|ontology_enrichment_celltype_v019=CL:0000499;1.30e-13;28!CL:0002559;5.19e-11;5!CL:0000135;1.17e-10;3!CL:0000388;1.17e-10;3!CL:0002521;1.40e-10;3!CL:0002564;4.15e-10;3!CL:0000632;5.33e-10;3!CL:0000327;2.29e-09;15!CL:0002596;1.87e-07;2!CL:0002561;2.42e-07;2!CL:0002583;2.42e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.91e-14,76;CL:0000499,1.10e-13,28;CL:0002559,4.34e-11,5;CL:0000135,7.07e-11,3;CL:0000388,7.07e-11,3;CL:0002521,1.35e-10,3;CL:0002564,4.48e-10,3;CL:0000632,7.12e-10,3;CL:0000327,2.72e-09,15;CL:0000048,5.28e-09,427;CL:0000723,1.04e-08,433;CL:0000034,2.49e-08,441;CL:0002583,1.77e-07,2;CL:0002596,1.77e-07,2;CL:0002561,2.01e-07,2;CL:0002320,2.88e-07,361 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!3.31e-19!83;UBERON:0002329!3.31e-19!83;UBERON:0003077!3.31e-19!83;UBERON:0003059!3.31e-19!83;UBERON:0007282!3.31e-19!83;UBERON:0009618!3.31e-19!83;UBERON:0007285!3.31e-19!83;UBERON:0004290!2.00e-18!70;UBERON:0002385!1.42e-15!63;UBERON:0001015!1.42e-15!63;UBERON:0000383!1.42e-15!63;UBERON:0000486!3.32e-15!82;UBERON:0001134!5.10e-15!61;UBERON:0002036!5.10e-15!61;UBERON:0003082!5.10e-15!61;UBERON:0005256!9.66e-14!143;UBERON:0003102!1.29e-12!95;UBERON:0002199!1.52e-11!45;UBERON:0002416!1.52e-11!45;UBERON:0004573!7.24e-09!33;UBERON:0004571!7.24e-09!33;UBERON:0001637!3.42e-08!42;UBERON:0003509!3.42e-08!42;UBERON:0004572!3.42e-08!42;UBERON:0002097!3.73e-08!40;UBERON:0002100!6.29e-08!216;UBERON:0000475!7.64e-08!365;UBERON:0001013!3.23e-07!14 | |ontology_enrichment_uberon=UBERON:0000914!3.31e-19!83;UBERON:0002329!3.31e-19!83;UBERON:0003077!3.31e-19!83;UBERON:0003059!3.31e-19!83;UBERON:0007282!3.31e-19!83;UBERON:0009618!3.31e-19!83;UBERON:0007285!3.31e-19!83;UBERON:0004290!2.00e-18!70;UBERON:0002385!1.42e-15!63;UBERON:0001015!1.42e-15!63;UBERON:0000383!1.42e-15!63;UBERON:0000486!3.32e-15!82;UBERON:0001134!5.10e-15!61;UBERON:0002036!5.10e-15!61;UBERON:0003082!5.10e-15!61;UBERON:0005256!9.66e-14!143;UBERON:0003102!1.29e-12!95;UBERON:0002199!1.52e-11!45;UBERON:0002416!1.52e-11!45;UBERON:0004573!7.24e-09!33;UBERON:0004571!7.24e-09!33;UBERON:0001637!3.42e-08!42;UBERON:0003509!3.42e-08!42;UBERON:0004572!3.42e-08!42;UBERON:0002097!3.73e-08!40;UBERON:0002100!6.29e-08!216;UBERON:0000475!7.64e-08!365;UBERON:0001013!3.23e-07!14 | ||
|ontology_enrichment_uberon_v019=UBERON:0002072;3.15e-16;5!UBERON:0002073;5.19e-11;5!UBERON:0007846;1.17e-10;3!UBERON:0000043;1.17e-10;3!UBERON:0007845;1.17e-10;3!UBERON:0002190;1.40e-10;3!UBERON:0002242;4.15e-10;3!UBERON:0004905;1.02e-09;8!UBERON:0000982;1.02e-09;8!UBERON:0004770;1.02e-09;8!UBERON:0001013;7.04e-08;14!UBERON:0005396;1.87e-07;2!UBERON:0005933;2.42e-07;2!UBERON:0005942;2.42e-07;2!UBERON:0005932;2.42e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002072,2.23e-16,5;UBERON:0002073,4.34e-11,5;UBERON:0005086,4.34e-11,5;UBERON:0007846,7.07e-11,3;UBERON:0000043,7.07e-11,3;UBERON:0007845,7.07e-11,3;UBERON:0002190,1.35e-10,3;UBERON:0002199,3.78e-10,46;UBERON:0002416,3.78e-10,46;UBERON:0002242,4.48e-10,3;UBERON:0003068,4.48e-10,3;UBERON:0002328,4.48e-10,3;UBERON:0004880,4.48e-10,3;UBERON:0004905,1.52e-09,8;UBERON:0000982,1.52e-09,8;UBERON:0004770,1.52e-09,8;UBERON:0003102,1.62e-08,99;UBERON:0001013,5.99e-08,14;UBERON:0005396,1.77e-07,2;UBERON:0005933,2.01e-07,2;UBERON:0005942,2.01e-07,2;UBERON:0005932,2.01e-07,2;UBERON:0002384,2.32e-07,371;UBERON:0000486,7.27e-07,83 | |||
|phase1_expression=0.363356758541113,1.07050261945492,0.140954404095971,0,0.446961094427288,0.872338524100369,5.06599756336621,1.26343974685366,2.35067065379855,0,0,0,0,0.866364470720326,0.994192127183747,0.672325146451775,1.80808358407193,2.19093027116212,2.43966399395253,0.123121058076788,0.612002073732759,1.56727360739044,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0.267440195783507,0,0,0,0,0.722878304769133,0.50133791063589,2.17269778441236,0.795285947051099,1.94653948121054,0,0,0.087834785693126,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.759783069987479,0.264818361626438,1.72101972449288,0.709336764396714,0,0,0.49333509683432,0.622422070799533,0.134710672069688,0,0.302714855289863,0,0.468642863667593,0.936480230490962,0,1.64393548606981,0.352303495931295,0.971237666208789,0.561803226808994,0.408308342509787,1.47401180774122,0.309977343527296,0,1.97813543422845,0,1.43723628363248,0.505008341862199,0.250237039743928,0,0,1.5324389789951,0.751190294532984,0.113432183160021,1.25572744982203,0.640672166455702,1.05965950579781,0.600182192168805,0.618315175430633,0.772921620136887,0.37223371266318,1.0126579934476,0.779496041289589,0.252433774244115,0.184099797284599,0.484938170456436,1.06502877754984,0.10075209822764,0.339121184620975,0,0,0,0,0,0.116193942869518,0,0,0,4.69348596989448,5.14592750554308,0,2.3218396401599,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,1.2347220339942,2.94017422771084,0,0,0,0,0,0.171567810298526,0,0,0,0,0,1.03993478527958,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308482478109971,0,0,0.112131084345361,0,0.1466765716419,0.129271715757778,0,4.22651376278,0,0,0.257207374262142,1.41849132023278,0.266422179016099,0.285955987316295,0,0,0.65147236858747,0.710783897485092,0.791951872933429,0,0,0,0,0,0,0.239624855491583,0,0,0.723906533337896,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,1.10422342547226,3.00102312635806,1.62759014219841,0.623912584592421,1.07057393278297,0.630809660135739,0.702848489956279,0,2.27407504055985,1.03473071292505,0,0.184369168541703,0.955719759148911,0.979005787313703,0.686286847621712,0,0,0.213455115606889,0,0,0,0.496215615637554,0,1.12264037773229,0.384417447767103,0.511707249066704,0,0,2.15893571323718,1.77561725313127,0.492762936082855,3.11552657510173,3.02146983995894,0,0,0,0.114814448164607,1.82091168006717,1.18011973463482,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0.328014645699706,0,0.206082023295445,0,0.082509499920588,0,0,0,0.96670718292122,0.924291702687866,0.767518373630648,0.275673144969061,0.322260734604821,1.88521702088497,0.596586391912706,0.534192213880424,0,0,0,0,0,0.62962469366128,0,0.616067160352178,1.06461206063404,0.869932992075073,0.9266210955196,0,0,0,0.571890581771475,0.255897791311334,0.855877976067841,1.27281299170375,3.13979456079692,0.359744915166629,0,0.589062011728432,0,0,0.842516912477962,0,0.731140468893853,1.05650146756755,0.272999822815972,0.707027159768564,1.13008116620243,0.551365343546124,1.99031692572366,0.876901770507525,0,2.62357900818653,0,0.30982349809975,0.281695602532241,0.143411352204052,0.294747123039363,0,0.709522128141196,1.05553817648832,2.30506425071931,0,1.04980416073495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0.111308705022906,0,0,0.796991953004279,0,0,0,0,0.933118762985422,0,0,0,0.591860433821602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0.366390373607449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0.802577647298789,0,0,0,0,1.18375320854817,0,0,0.126373159256976,0,0,0,0,0,0,0.569219092059585,0,0,0,0,0.17472666824203,0,0,0,0,0.193978032976839,0,0,0.137041924646751,0,0,0,0,0.213452994739353,0.39961921916426,0,0,0,0,0,0,0.135904206073614,0.104602846312333,0.203996435272644,0.288950589901519,0,0,0,0.429765441419957,0,0.837847203816763,0.458320848023367,0,0,0,0,0.0671834724867263,1.08089965062721,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0.714695326373367,0,0,0.542999601753713,0.864221491201268,0.653174720218818,0,0,0.170388021785422,0,0.146552233678082,0,0,0,0,0,0.213574825135389,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0.74627401443437,2.33713309847224,0.554805861502613,0.189403005275089,0.754703705257725,0,0.686520205190771,0.604923695052956,0.466311601748341,0.591420599958536,0.477890301491107,0.899606224327209,0.310525913752519,1.24411862352257,0.797525143673985,0,0.450772826991655,0.380805212168795,0,0.727394636810238,0.537052785212442,1.39210127963548,1.19428766609585,0.400027764663154,0.686791410365586,1.6837474438296,0,0,0,0,0,0.231522474323834,0,0,0,0.219284049578707,0.176689145945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| ||
|short_description=p42@COL6A2 | |short_description=p42@COL6A2 | ||
}} | }} |
Latest revision as of 23:03, 18 September 2015
Short description: | p42@COL6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_42_at_COL6A2_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | -92bp_to_AL360197_5end |
EntrezGene: | COL6A2 |
HGNC: | 2212 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.91e-14 | 76 |
stromal cell | 1.10e-13 | 28 |
hair follicle cell | 4.34e-11 | 5 |
fibrocyte | 7.07e-11 | 3 |
tendon cell | 7.07e-11 | 3 |
subcutaneous fat cell | 1.35e-10 | 3 |
nucleus pulposus cell of intervertebral disc | 4.48e-10 | 3 |
hepatic stellate cell | 7.12e-10 | 3 |
extracellular matrix secreting cell | 2.72e-09 | 15 |
multi fate stem cell | 5.28e-09 | 427 |
somatic stem cell | 1.04e-08 | 433 |
stem cell | 2.49e-08 | 441 |
subcutaneous preadipocyte | 1.77e-07 | 2 |
smooth muscle cell of the carotid artery | 1.77e-07 | 2 |
outer root sheath cell | 2.01e-07 | 2 |
connective tissue cell | 2.88e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
hypodermis | 2.23e-16 | 5 |
hair follicle | 4.34e-11 | 5 |
hair follicle placode | 4.34e-11 | 5 |
dense regular connective tissue | 7.07e-11 | 3 |
tendon | 7.07e-11 | 3 |
regular connective tissue | 7.07e-11 | 3 |
subcutaneous adipose tissue | 1.35e-10 | 3 |
integument | 3.78e-10 | 46 |
integumental system | 3.78e-10 | 46 |
nucleus pulposus | 4.48e-10 | 3 |
axial mesoderm | 4.48e-10 | 3 |
notochord | 4.48e-10 | 3 |
chordamesoderm | 4.48e-10 | 3 |
articulation | 1.52e-09 | 8 |
skeletal joint | 1.52e-09 | 8 |
articular system | 1.52e-09 | 8 |
surface structure | 1.62e-08 | 99 |
adipose tissue | 5.99e-08 | 14 |
carotid artery segment | 1.77e-07 | 2 |
hair root sheath | 2.01e-07 | 2 |
hair outer root sheath | 2.01e-07 | 2 |
bulb of hair follicle | 2.01e-07 | 2 |
connective tissue | 2.32e-07 | 371 |
multilaminar epithelium | 7.27e-07 | 83 |