FFCP PHASE1:Hg19::chr20:61640711..61640756,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=63930 | |EntrezGene=63930 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000370344,NR_033370,uc002yec.1_5end | |association_with_transcript=0bp_to_ENST00000370344,NR_033370,uc002yec.1_5end | ||
|cluster_id=chr20:61640711..61640756,+ | |||
|coexpression_cluster_id=C4059 | |coexpression_cluster_id=C4059 | ||
|description=CAGE_peak_1_at_LOC63930_5end | |description=CAGE_peak_1_at_LOC63930_5end | ||
|id=chr20:61640711..61640756,+ | |id=chr20:61640711..61640756,+ | ||
|ontology_enrichment_celltype=CL:0000945!3.37e-17!24;CL:0000826!3.37e-17!24;CL:0002322!8.16e-15!5;CL:0000838!5.53e-12!52;CL:0000542!1.11e-11!53;CL:0000051!1.11e-11!53;CL:0000817!1.61e-10!3;CL:0000785!1.02e-07!2;CL:0000955!1.02e-07!2;CL:0000818!1.02e-07!2;CL:0000954!1.02e-07!2;CL:0000816!1.02e-07!2;CL:0000039!7.72e-07!7;CL:0000586!7.72e-07!7 | |ontology_enrichment_celltype=CL:0000945!3.37e-17!24;CL:0000826!3.37e-17!24;CL:0002322!8.16e-15!5;CL:0000838!5.53e-12!52;CL:0000542!1.11e-11!53;CL:0000051!1.11e-11!53;CL:0000817!1.61e-10!3;CL:0000785!1.02e-07!2;CL:0000955!1.02e-07!2;CL:0000818!1.02e-07!2;CL:0000954!1.02e-07!2;CL:0000816!1.02e-07!2;CL:0000039!7.72e-07!7;CL:0000586!7.72e-07!7 | ||
|ontology_enrichment_celltype_v019=CL:0000945;1.44e-44;24!CL:0000542;5.48e-13;53!CL:0000946;1.18e-12;1!CL:0000786;1.18e-12;1!CL:0000785;3.26e-12;1!CL:0000819;3.26e-12;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,1.47e-44,24;CL:0000826,1.47e-44,24;CL:0000838,3.08e-24,52;CL:0000542,9.38e-24,53;CL:0000051,9.38e-24,53;CL:0000785,4.89e-23,2;CL:0000955,4.89e-23,2;CL:0000818,4.89e-23,2;CL:0000954,4.89e-23,2;CL:0000816,4.89e-23,2;CL:0000817,1.06e-15,3;CL:0000946,1.25e-12,1;CL:0000786,1.25e-12,1;CL:0000980,1.25e-12,1;CL:0000819,3.45e-12,1;CL:0002087,4.87e-10,115;CL:0000738,5.47e-10,136;CL:0002031,1.47e-09,120;CL:0000037,9.16e-08,168;CL:0000988,2.78e-07,177;CL:0002032,9.66e-07,161;CL:0000837,9.66e-07,161 | |||
|ontology_enrichment_development_v019=CL:0000954;4.37e-23;2!CL:0000051;5.48e-13;53!UBERON:0004872;2.65e-07;7!UBERON:0006965;9.81e-07;2 | |||
|ontology_enrichment_disease=DOID:0060058!6.30e-20!10 | |ontology_enrichment_disease=DOID:0060058!6.30e-20!10 | ||
|ontology_enrichment_disease_v019=DOID:0060058;9.64e-40;10!DOID:630;9.37e-13;1!DOID:0050177;9.37e-13;1!DOID:0050427;9.37e-13;1!DOID:2355;1.75e-12;1!DOID:0060073;3.26e-12;1!DOID:8675;3.26e-12;1!DOID:74;7.20e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,9.64e-40,10;DOID:630,8.85e-13,1;DOID:0050177,8.85e-13,1;DOID:0050427,8.85e-13,1;DOID:2355,1.75e-12,1;DOID:0060073,3.45e-12,1;DOID:8675,3.45e-12,1;DOID:2531,3.98e-10,51;DOID:0060083,3.98e-10,51;DOID:74,7.20e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0001869!9.38e-14!32;UBERON:0002619!4.89e-13!22;UBERON:0001893!8.74e-13!34;UBERON:0007023!1.81e-12!115;UBERON:0001950!9.11e-12!20;UBERON:0002791!2.19e-11!33;UBERON:0000956!2.89e-11!25;UBERON:0000203!2.89e-11!25;UBERON:0004177!4.42e-11!7;UBERON:0002020!5.60e-11!34;UBERON:0003528!5.60e-11!34;UBERON:0002780!3.94e-10!41;UBERON:0001890!3.94e-10!41;UBERON:0006240!3.94e-10!41;UBERON:0000349!4.08e-10!5;UBERON:0003080!7.99e-10!42;UBERON:0002106!1.34e-09!3;UBERON:0004854!1.34e-09!3;UBERON:0009034!1.34e-09!3;UBERON:0002095!1.34e-09!3;UBERON:0004782!1.34e-09!3;UBERON:0003281!1.34e-09!3;UBERON:0009664!1.34e-09!3;UBERON:0002296!1.34e-09!3;UBERON:0005602!1.34e-09!3;UBERON:0001179!1.34e-09!3;UBERON:0006293!1.34e-09!3;UBERON:0001871!4.82e-09!7;UBERON:0001876!1.99e-07!2;UBERON:0003056!6.94e-07!61 | |ontology_enrichment_uberon=UBERON:0001869!9.38e-14!32;UBERON:0002619!4.89e-13!22;UBERON:0001893!8.74e-13!34;UBERON:0007023!1.81e-12!115;UBERON:0001950!9.11e-12!20;UBERON:0002791!2.19e-11!33;UBERON:0000956!2.89e-11!25;UBERON:0000203!2.89e-11!25;UBERON:0004177!4.42e-11!7;UBERON:0002020!5.60e-11!34;UBERON:0003528!5.60e-11!34;UBERON:0002780!3.94e-10!41;UBERON:0001890!3.94e-10!41;UBERON:0006240!3.94e-10!41;UBERON:0000349!4.08e-10!5;UBERON:0003080!7.99e-10!42;UBERON:0002106!1.34e-09!3;UBERON:0004854!1.34e-09!3;UBERON:0009034!1.34e-09!3;UBERON:0002095!1.34e-09!3;UBERON:0004782!1.34e-09!3;UBERON:0003281!1.34e-09!3;UBERON:0009664!1.34e-09!3;UBERON:0002296!1.34e-09!3;UBERON:0005602!1.34e-09!3;UBERON:0001179!1.34e-09!3;UBERON:0006293!1.34e-09!3;UBERON:0001871!4.82e-09!7;UBERON:0001876!1.99e-07!2;UBERON:0003056!6.94e-07!61 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;3.30e-23;2!UBERON:0005058;3.30e-23;2!UBERON:0009113;3.30e-23;2!UBERON:0004177;8.07e-21;5!UBERON:0005057;8.07e-21;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,4.58e-15,7;UBERON:0005057,4.58e-15,7;UBERON:0002370,4.09e-12,4;UBERON:0005058,4.09e-12,4;UBERON:0009113,4.09e-12,4;UBERON:0003295,4.09e-12,4;UBERON:0005562,4.09e-12,4;UBERON:0003351,2.25e-08,6 | |||
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| ||
|short_description=p1@LOC63930 | |short_description=p1@LOC63930 | ||
}} | }} |
Latest revision as of 12:07, 17 September 2015
Short description: | p1@LOC63930 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LOC63930_5end |
Coexpression cluster: | C4059_Hodgkin_splenic_acute_xeroderma_Burkitt_plasma_thymus |
Association with transcript: | 0bp_to_ENST00000370344, NR_033370, uc002yec.1_5end |
EntrezGene: | LOC63930 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 1.47e-44 | 24 |
pro-B cell | 1.47e-44 | 24 |
lymphoid lineage restricted progenitor cell | 3.08e-24 | 52 |
lymphocyte | 9.38e-24 | 53 |
common lymphoid progenitor | 9.38e-24 | 53 |
mature B cell | 4.89e-23 | 2 |
pre-B-II cell | 4.89e-23 | 2 |
transitional stage B cell | 4.89e-23 | 2 |
small pre-B-II cell | 4.89e-23 | 2 |
immature B cell | 4.89e-23 | 2 |
precursor B cell | 1.06e-15 | 3 |
antibody secreting cell | 1.25e-12 | 1 |
plasma cell | 1.25e-12 | 1 |
plasmablast | 1.25e-12 | 1 |
B-1 B cell | 3.45e-12 | 1 |
nongranular leukocyte | 4.87e-10 | 115 |
leukocyte | 5.47e-10 | 136 |
hematopoietic lineage restricted progenitor cell | 1.47e-09 | 120 |
hematopoietic stem cell | 9.16e-08 | 168 |
hematopoietic cell | 2.78e-07 | 177 |
hematopoietic oligopotent progenitor cell | 9.66e-07 | 161 |
hematopoietic multipotent progenitor cell | 9.66e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 4.58e-15 | 7 |
immune organ | 4.58e-15 | 7 |
thymus | 4.09e-12 | 4 |
hemolymphoid system gland | 4.09e-12 | 4 |
thymic region | 4.09e-12 | 4 |
pharyngeal gland | 4.09e-12 | 4 |
thymus primordium | 4.09e-12 | 4 |
pharyngeal epithelium | 2.25e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 9.64e-40 | 10 |
genetic disease | 8.85e-13 | 1 |
monogenic disease | 8.85e-13 | 1 |
xeroderma pigmentosum | 8.85e-13 | 1 |
anemia | 1.75e-12 | 1 |
lymphatic system cancer | 3.45e-12 | 1 |
lymphosarcoma | 3.45e-12 | 1 |
hematologic cancer | 3.98e-10 | 51 |
immune system cancer | 3.98e-10 | 51 |
hematopoietic system disease | 7.20e-07 | 2 |