FFCP PHASE1:Hg19::chr20:26116623..26116634,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:26116623..26116634,+ | |||
|coexpression_cluster_id=C2254 | |coexpression_cluster_id=C2254 | ||
|description=CAGE_peak_at_chr20:26116623..26116634,+ | |description=CAGE_peak_at_chr20:26116623..26116634,+ | ||
|id=chr20:26116623..26116634,+ | |id=chr20:26116623..26116634,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000054;1.33e-15;2!CL:0000137;1.33e-15;2!CL:0000092;1.33e-15;2!CL:1000415;2.05e-15;2!CL:0000322;9.90e-11;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000054,1.33e-15,2;CL:0000137,1.33e-15,2;CL:0000092,1.33e-15,2;CL:1000415,1.78e-15,2;CL:0000322,1.20e-10,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.14e-13!235;DOID:14566!2.91e-13!239;DOID:1115!1.75e-09!20;DOID:0050686!8.30e-08!137;DOID:0050687!1.59e-07!143;DOID:0060085!3.13e-07!1;DOID:3165!3.13e-07!1;DOID:0060121!3.13e-07!1;DOID:2438!3.13e-07!1;DOID:4418!3.13e-07!1 | |ontology_enrichment_disease=DOID:162!1.14e-13!235;DOID:14566!2.91e-13!239;DOID:1115!1.75e-09!20;DOID:0050686!8.30e-08!137;DOID:0050687!1.59e-07!143;DOID:0060085!3.13e-07!1;DOID:3165!3.13e-07!1;DOID:0060121!3.13e-07!1;DOID:2438!3.13e-07!1;DOID:4418!3.13e-07!1 | ||
|ontology_enrichment_disease_v019=DOID:0060085;9.98e-30;1!DOID:3165;9.98e-30;1!DOID:0060121;9.98e-30;1!DOID:2438;9.98e-30;1!DOID:4418;9.98e-30;1!DOID:200;1.33e-15;2!DOID:4305;1.33e-15;2!DOID:3910;2.05e-15;2!DOID:0060058;2.24e-12;10!DOID:0060072;1.82e-08;4!DOID:5093;2.26e-08;4!DOID:1612;2.26e-08;4!DOID:3908;6.04e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:0060085,9.99e-30,1;DOID:3165,9.99e-30,1;DOID:0060121,9.99e-30,1;DOID:2438,9.99e-30,1;DOID:4418,9.99e-30,1;DOID:200,1.33e-15,2;DOID:4305,1.33e-15,2;DOID:3910,2.74e-15,2;DOID:0060058,2.00e-12,10;DOID:0060072,1.82e-08,4;DOID:5093,2.43e-08,4;DOID:1612,2.43e-08,4;DOID:3908,6.77e-07,5 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0004903;2.05e-15;2!UBERON:0002173;2.05e-15;2!UBERON:0002186;2.05e-15;2!UBERON:0002106;9.90e-11;3!UBERON:0002110;9.90e-11;3!UBERON:0004821;9.90e-11;3!UBERON:0007499;9.90e-11;3!UBERON:0003215;9.90e-11;3!UBERON:0010368;9.90e-11;3!UBERON:0009911;9.90e-11;3!UBERON:0002299;9.90e-11;3!UBERON:0006524;9.90e-11;3!UBERON:0008874;9.90e-11;3!UBERON:0002169;9.90e-11;3!UBERON:0004894;9.90e-11;3!UBERON:0000014;1.82e-08;4!UBERON:0009856;2.26e-08;4!UBERON:0002075;3.04e-07;18!UBERON:0004177;6.04e-07;5!UBERON:0005057;6.04e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,2.74e-15,2;UBERON:0002173,2.74e-15,2;UBERON:0002186,2.74e-15,2;UBERON:0002106,8.17e-11,3;UBERON:0004854,8.17e-11,3;UBERON:0009034,8.17e-11,3;UBERON:0002095,8.17e-11,3;UBERON:0004782,8.17e-11,3;UBERON:0003281,8.17e-11,3;UBERON:0009664,8.17e-11,3;UBERON:0002296,8.17e-11,3;UBERON:0005602,8.17e-11,3;UBERON:0001179,8.17e-11,3;UBERON:0006293,8.17e-11,3;UBERON:0002110,8.99e-11,3;UBERON:0006242,8.99e-11,3;UBERON:0004821,1.20e-10,3;UBERON:0003215,1.20e-10,3;UBERON:0010368,1.20e-10,3;UBERON:0009911,1.20e-10,3;UBERON:0002299,1.20e-10,3;UBERON:0006524,1.20e-10,3;UBERON:0008874,1.20e-10,3;UBERON:0002169,1.20e-10,3;UBERON:0004894,1.20e-10,3;UBERON:0000014,1.82e-08,4;UBERON:0002075,2.77e-07,18 | |||
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|short_description=p@chr20:26116623..26116634,+ | |short_description=p@chr20:26116623..26116634,+ | ||
}} | }} |
Latest revision as of 12:44, 28 July 2015
Short description: | p@chr20:26116623..26116634, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:26116623..26116634, + |
Coexpression cluster: | C2254_splenic_adult_fibrosarcoma_signet_renal_testis_fibrous |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone matrix secreting cell | 1.33e-15 | 2 |
osteocyte | 1.33e-15 | 2 |
osteoclast | 1.33e-15 | 2 |
epithelial cell of gall bladder | 1.78e-15 | 2 |
pneumocyte | 1.20e-10 | 3 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 2.74e-15 | 2 |
alveolar duct | 2.74e-15 | 2 |
bronchiole | 2.74e-15 | 2 |
spleen | 8.17e-11 | 3 |
gastrointestinal system mesentery | 8.17e-11 | 3 |
stomach region | 8.17e-11 | 3 |
mesentery | 8.17e-11 | 3 |
gastrointestinal system serosa | 8.17e-11 | 3 |
mesentery of stomach | 8.17e-11 | 3 |
gut mesentery | 8.17e-11 | 3 |
dorsal mesentery | 8.17e-11 | 3 |
dorsal mesogastrium | 8.17e-11 | 3 |
peritoneal cavity | 8.17e-11 | 3 |
spleen primordium | 8.17e-11 | 3 |
gallbladder | 8.99e-11 | 3 |
gall bladder primordium | 8.99e-11 | 3 |
pulmonary alveolus epithelium | 1.20e-10 | 3 |
alveolus | 1.20e-10 | 3 |
pulmonary lobule | 1.20e-10 | 3 |
lobule | 1.20e-10 | 3 |
alveolus of lung | 1.20e-10 | 3 |
alveolar system | 1.20e-10 | 3 |
pulmonary acinus | 1.20e-10 | 3 |
alveolar sac | 1.20e-10 | 3 |
alveolar wall | 1.20e-10 | 3 |
zone of skin | 1.82e-08 | 4 |
viscus | 2.77e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
organ system benign neoplasm | 9.99e-30 | 1 |
skin benign neoplasm | 9.99e-30 | 1 |
integumentary system benign neoplasm | 9.99e-30 | 1 |
dermis tumor | 9.99e-30 | 1 |
cutaneous fibrous histiocytoma | 9.99e-30 | 1 |
giant cell tumor | 1.33e-15 | 2 |
bone giant cell tumor | 1.33e-15 | 2 |
lung adenocarcinoma | 2.74e-15 | 2 |
lymphoma | 2.00e-12 | 10 |
benign neoplasm | 1.82e-08 | 4 |
thoracic cancer | 2.43e-08 | 4 |
breast cancer | 2.43e-08 | 4 |
non-small cell lung carcinoma | 6.77e-07 | 5 |