FFCP PHASE1:Hg19::chr1:158223861..158223916,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=909 | |EntrezGene=909 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1634 | |HGNC=1634 | ||
|TSSclassifier=strong | |||
|UniProt=P06126 | |UniProt=P06126 | ||
|association_with_transcript=-10bp_to_ENST00000289429,NM_001763,uc001frt.2_5end | |association_with_transcript=-10bp_to_ENST00000289429,NM_001763,uc001frt.2_5end | ||
|cluster_id=chr1:158223861..158223916,+ | |||
|coexpression_cluster_id=C28 | |coexpression_cluster_id=C28 | ||
|description=CAGE_peak_7_at_CD1A_5end | |description=CAGE_peak_7_at_CD1A_5end | ||
|id=chr1:158223861..158223916,+ | |id=chr1:158223861..158223916,+ | ||
|ontology_enrichment_celltype=CL:0002009!3.85e-17!65;CL:0000738!1.85e-16!140;CL:0002031!3.98e-16!124;CL:0000557!3.85e-15!71;CL:0002087!1.03e-14!119;CL:0002194!1.41e-14!63;CL:0000576!1.41e-14!63;CL:0000040!1.41e-14!63;CL:0000559!1.41e-14!63;CL:0000988!9.79e-14!182;CL:0000037!2.60e-13!172;CL:0000566!2.60e-13!172;CL:0002032!2.82e-13!165;CL:0000837!2.82e-13!165;CL:0002057!6.75e-13!42;CL:0000839!1.55e-12!70;CL:0000766!2.48e-12!76;CL:0000860!9.53e-12!45;CL:0000840!3.07e-11!5;CL:0001029!3.07e-11!5;CL:0000763!8.09e-11!112;CL:0000049!8.09e-11!112;CL:0000990!5.30e-10!8;CL:0000451!4.96e-08!10 | |ontology_enrichment_celltype=CL:0002009!3.85e-17!65;CL:0000738!1.85e-16!140;CL:0002031!3.98e-16!124;CL:0000557!3.85e-15!71;CL:0002087!1.03e-14!119;CL:0002194!1.41e-14!63;CL:0000576!1.41e-14!63;CL:0000040!1.41e-14!63;CL:0000559!1.41e-14!63;CL:0000988!9.79e-14!182;CL:0000037!2.60e-13!172;CL:0000566!2.60e-13!172;CL:0002032!2.82e-13!165;CL:0000837!2.82e-13!165;CL:0002057!6.75e-13!42;CL:0000839!1.55e-12!70;CL:0000766!2.48e-12!76;CL:0000860!9.53e-12!45;CL:0000840!3.07e-11!5;CL:0001029!3.07e-11!5;CL:0000763!8.09e-11!112;CL:0000049!8.09e-11!112;CL:0000990!5.30e-10!8;CL:0000451!4.96e-08!10 | ||
|ontology_enrichment_celltype_v019=CL:0000840;3.86e-09;5!CL:0001014;1.87e-07;2!CL:0001016;1.87e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.31e-09,136;CL:0000840,3.02e-09,5;CL:0001029,3.02e-09,5;CL:0002031,4.90e-09,120;CL:0002087,1.24e-07,115;CL:0000037,1.63e-07,168;CL:0001014,1.64e-07,2;CL:0001016,1.64e-07,2;CL:0000988,4.64e-07,177;CL:0002009,7.84e-07,61 | |||
|ontology_enrichment_development_v019=UBERON:0005425;1.25e-13;1!UBERON:0006965;1.87e-07;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.37e-19!102;UBERON:0003061!5.37e-19!102;UBERON:0002193!9.98e-18!112;UBERON:0002405!1.14e-14!115;UBERON:0002371!4.57e-14!80;UBERON:0001474!1.28e-12!86;UBERON:0004765!7.54e-12!101;UBERON:0001434!7.54e-12!101;UBERON:0004177!7.21e-09!7 | |ontology_enrichment_uberon=UBERON:0002390!5.37e-19!102;UBERON:0003061!5.37e-19!102;UBERON:0002193!9.98e-18!112;UBERON:0002405!1.14e-14!115;UBERON:0002371!4.57e-14!80;UBERON:0001474!1.28e-12!86;UBERON:0004765!7.54e-12!101;UBERON:0001434!7.54e-12!101;UBERON:0004177!7.21e-09!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.57e-26;2!UBERON:0005058;1.57e-26;2!UBERON:0009113;1.57e-26;2!UBERON:0000941;1.25e-13;1!UBERON:0007195;1.25e-13;1!UBERON:0001785;1.25e-13;1!UBERON:0002464;1.25e-13;1!UBERON:0004904;1.25e-13;1!UBERON:0001021;1.25e-13;1!UBERON:0004177;3.28e-11;5!UBERON:0005057;3.28e-11;5!UBERON:0003714;1.87e-07;2!UBERON:0005162;1.87e-07;2!UBERON:0000122;1.87e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,8.59e-14,4;UBERON:0005058,8.59e-14,4;UBERON:0009113,8.59e-14,4;UBERON:0003295,8.59e-14,4;UBERON:0005562,8.59e-14,4;UBERON:0000941,1.10e-13,1;UBERON:0001785,1.10e-13,1;UBERON:0002464,1.10e-13,1;UBERON:0004904,1.10e-13,1;UBERON:0001021,1.10e-13,1;UBERON:0003902,1.10e-13,1;UBERON:0005425,1.10e-13,1;UBERON:0007195,1.83e-13,1;UBERON:0002405,1.13e-09,93;UBERON:0003351,1.68e-09,6;UBERON:0002390,3.95e-09,98;UBERON:0003061,3.95e-09,98;UBERON:0004177,2.88e-08,7;UBERON:0005057,2.88e-08,7;UBERON:0002193,3.40e-08,108;UBERON:0003714,1.75e-07,2;UBERON:0005162,1.75e-07,2;UBERON:0000122,1.75e-07,2;UBERON:0002371,3.02e-07,76 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229240217243854,0.0821005894499457,0.0787107813136792,0.393364276848904,0,0,0,0,0.369754010166788,0.0774672005803016,0,0,0.553995408531877,0,0.217010870715852,0.223915474239924,0,0,0,0.377875943688809,0.242584061187816,0,0,0,0,0,0,1.37898272294647,0.645484683583826,1.35426486594342,0,0,0.224723484445085,0.612167784741805,0.320929027076094,0,0,0,0,0,0,0,0.502497330513487,1.0429658368404,0,0,0.368277635987565,0,0,0,0,0.112328631146495,0.150176892841506,0.32145117339416,0,0.19891667719909,0,0,0,0,0,0,1.14950487990897,0.661044872784862,0,0,0,0,0,0,0,0,0,0,0,0,0.473447805734733,0,0,0,0,0,0,0,0,0.276350017785848,0.289803085735052,0.444859689486181,0,0,0.113309342697566,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.649094787309367,0.348259474598534,1.72845348674525,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252433774244115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.7487656724886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0.355391948742546,0,0,0,0,0,0,2.10833939483032,0,0,0,0,0,0,0.224170287987055,0,0,0,0,0,0.773288812777695,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211103257785751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422215270595328,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0,0,0,0,0,0,16.4337658134837,2.39139409093234,0,0,0.211673582723883,0,0,0,0,0,0,0.481764225311099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183195186803725,0.533034776018635,2.04386596391473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0,0.208843899010911,0,0,0,0,0,0,0,0,0,0,0.300646838828985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0.449947783103001,1.5476039091159,0,0.335434687599266,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0.395223263795889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212574920101683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0.11294608203896,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0.257831551894309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,33.5862331147232,16.5118740026982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61019034872821,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229240217243854,0.0821005894499457,0.0787107813136792,0.393364276848904,0,0,0,0,0.369754010166788,0.0774672005803016,0,0,0.553995408531877,0,0.217010870715852,0.223915474239924,0,0,0,0.377875943688809,0.242584061187816,0,0,0,0,0,0,1.37898272294647,0.645484683583826,1.35426486594342,0,0,0.224723484445085,0.612167784741805,0.320929027076094,0,0,0,0,0,0,0,0.502497330513487,1.0429658368404,0,0,0.368277635987565,0,0,0,0,0.112328631146495,0.150176892841506,0.32145117339416,0,0.19891667719909,0,0,0,0,0,0,1.14950487990897,0.661044872784862,0,0,0,0,0,0,0,0,0,0,0,0,0.473447805734733,0,0,0,0,0,0,0,0,0.276350017785848,0.289803085735052,0.444859689486181,0,0,0.113309342697566,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.649094787309367,0.348259474598534,1.72845348674525,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252433774244115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.7487656724886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0.355391948742546,0,0,0,0,0,0,2.10833939483032,0,0,0,0,0,0,0.224170287987055,0,0,0,0,0,0.773288812777695,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211103257785751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422215270595328,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0,0,0,0,0,0,16.4337658134837,2.39139409093234,0,0,0.211673582723883,0,0,0,0,0,0,0.481764225311099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183195186803725,0.533034776018635,2.04386596391473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0,0.208843899010911,0,0,0,0,0,0,0,0,0,0,0.300646838828985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0.449947783103001,1.5476039091159,0,0.335434687599266,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0.395223263795889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212574920101683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0.11294608203896,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0.257831551894309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,33.5862331147232,16.5118740026982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61019034872821,0 | ||
|short_description=p7@CD1A | |short_description=p7@CD1A | ||
}} | }} |
Latest revision as of 20:04, 17 September 2015
Short description: | p7@CD1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_CD1A_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | -10bp_to_ENST00000289429, NM_001763, uc001frt.2_5end |
EntrezGene: | CD1A |
HGNC: | 1634 |
UniProt: | P06126 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.31e-09 | 136 |
immature conventional dendritic cell | 3.02e-09 | 5 |
common dendritic progenitor | 3.02e-09 | 5 |
hematopoietic lineage restricted progenitor cell | 4.90e-09 | 120 |
nongranular leukocyte | 1.24e-07 | 115 |
hematopoietic stem cell | 1.63e-07 | 168 |
CD1a-positive Langerhans cell | 1.64e-07 | 2 |
immature CD1a-positive Langerhans cell | 1.64e-07 | 2 |
hematopoietic cell | 4.64e-07 | 177 |
macrophage dendritic cell progenitor | 7.84e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
thymus | 8.59e-14 | 4 |
hemolymphoid system gland | 8.59e-14 | 4 |
thymic region | 8.59e-14 | 4 |
pharyngeal gland | 8.59e-14 | 4 |
thymus primordium | 8.59e-14 | 4 |
cranial nerve II | 1.10e-13 | 1 |
cranial nerve | 1.10e-13 | 1 |
nerve trunk | 1.10e-13 | 1 |
nerve connecting eye with brain | 1.10e-13 | 1 |
nerve | 1.10e-13 | 1 |
retinal neural layer | 1.10e-13 | 1 |
presumptive neural retina | 1.10e-13 | 1 |
stroma of bone marrow | 1.83e-13 | 1 |
immune system | 1.13e-09 | 93 |
pharyngeal epithelium | 1.68e-09 | 6 |
hematopoietic system | 3.95e-09 | 98 |
blood island | 3.95e-09 | 98 |
hemopoietic organ | 2.88e-08 | 7 |
immune organ | 2.88e-08 | 7 |
hemolymphoid system | 3.40e-08 | 108 |
neural tissue | 1.75e-07 | 2 |
multi cell component structure | 1.75e-07 | 2 |
neuron projection bundle | 1.75e-07 | 2 |
bone marrow | 3.02e-07 | 76 |