FFCP PHASE1:Hg19::chr18:5410605..5410661,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr18:5410605..5410661,- | |||
|coexpression_cluster_id=C83 | |coexpression_cluster_id=C83 | ||
|description=CAGE_peak_at_chr18:5410605..5410661,- | |description=CAGE_peak_at_chr18:5410605..5410661,- | ||
|id=chr18:5410605..5410661,- | |id=chr18:5410605..5410661,- | ||
|ontology_enrichment_celltype=CL:0000244!6.22e-07!4;CL:0000731!6.22e-07!4 | |ontology_enrichment_celltype=CL:0000244!6.22e-07!4;CL:0000731!6.22e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0000349;8.67e-27;19!CL:0000244;1.77e-17;4!CL:0000731;1.77e-17;4!CL:0002577;1.25e-14;3!CL:0002541;5.03e-14;3!CL:0002536;6.73e-10;2!CL:0002537;6.10e-09;5!CL:0000622;2.09e-08;5!CL:0000154;4.50e-07;6!CL:0002623;6.86e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,7.09e-27,19;CL:0000244,1.93e-17,4;CL:0000731,1.93e-17,4;CL:0002577,1.22e-14,3;CL:0002541,3.76e-14,3;CL:0002536,7.19e-10,2;CL:0002537,5.71e-09,5;CL:0000622,2.47e-08,5;CL:0000154,5.16e-07,6;CL:0002623,8.06e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!1.76e-15!14;UBERON:0000158!1.76e-15!14;UBERON:0003124!1.17e-11!7;UBERON:0007023!6.32e-11!115;UBERON:0000478!6.50e-09!24;UBERON:0002298!1.03e-08!8;UBERON:0001987!1.77e-07!4;UBERON:0004340!1.77e-07!4;UBERON:0001049!2.61e-07!57;UBERON:0005068!2.61e-07!57;UBERON:0006241!2.61e-07!57;UBERON:0007135!2.61e-07!57;UBERON:0000153!5.26e-07!129;UBERON:0007811!5.26e-07!129 | |ontology_enrichment_uberon=UBERON:0005631!1.76e-15!14;UBERON:0000158!1.76e-15!14;UBERON:0003124!1.17e-11!7;UBERON:0007023!6.32e-11!115;UBERON:0000478!6.50e-09!24;UBERON:0002298!1.03e-08!8;UBERON:0001987!1.77e-07!4;UBERON:0004340!1.77e-07!4;UBERON:0001049!2.61e-07!57;UBERON:0005068!2.61e-07!57;UBERON:0006241!2.61e-07!57;UBERON:0007135!2.61e-07!57;UBERON:0000153!5.26e-07!129;UBERON:0007811!5.26e-07!129 | ||
|ontology_enrichment_uberon_v019=UBERON:0000478;3.55e-29;24!UBERON:0005631;9.17e-28;10!UBERON:0000158;9.17e-28;10!UBERON:0001987;4.82e-19;4!UBERON:0000305;3.47e-16;7!UBERON:0003124;5.03e-14;3!UBERON:0000920;5.03e-14;3!UBERON:0000365;5.14e-14;5!UBERON:0005910;1.06e-11;6!UBERON:0000486;1.03e-08;12!UBERON:0000077;3.03e-07;27!UBERON:0001723;3.40e-07;3!UBERON:0001033;3.40e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.18e-44,14;UBERON:0000158,1.18e-44,14;UBERON:0003124,2.02e-31,7;UBERON:0000478,3.05e-29,24;UBERON:0001987,4.82e-19,4;UBERON:0004340,4.82e-19,4;UBERON:0000305,3.37e-16,7;UBERON:0000920,3.76e-14,3;UBERON:0004871,3.86e-14,8;UBERON:0000365,5.51e-14,5;UBERON:0004923,5.85e-12,66;UBERON:0005910,1.12e-11,6;UBERON:0001008,1.03e-10,48;UBERON:0004175,2.11e-10,25;UBERON:0005795,2.22e-09,22;UBERON:0003975,2.67e-09,22;UBERON:0006554,3.65e-09,47;UBERON:0000161,2.39e-08,36;UBERON:0000995,2.41e-07,21;UBERON:0004119,3.35e-07,160;UBERON:0000925,3.35e-07,160;UBERON:0006595,3.35e-07,160;UBERON:0001723,3.40e-07,3;UBERON:0001033,3.40e-07,3;UBERON:0010056,3.40e-07,3;UBERON:0000166,9.33e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,0,0,6.11635841964482,3.4289707169699,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0.154816123316076,0,0.30120591877825,0.739508020333575,0,0,0,0.553995408531877,0,0,0.223915474239924,0,0,0,0,0,0,0,0.309706370895104,0.575384784644301,0.256160706529101,0,0.344745680736619,0,0,0.376484679085209,0,0,0.306083892370903,0,0,0.329851300186716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16072558669708,0.285012743741249,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0.0654895377488563,0,2.59549109949101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0,0,0.140450806702248,0,0,0.206651562351531,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,1.09098448236334,0,0,0.132529768321485,0.116193942869518,0.932949495138334,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219500570817251,0,0.402115889646523,0.277765335475589,0,0,0,0,0,0.144366447761074,0,0,0,0,0.246217006087397,0,0.148631162288728,0.93733833986777,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0.106727557803444,6.66880657181771,13.3148351608398,12.7003923198466,0.496215615637554,0,0.280660094433074,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0.460404944679482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.3463219434655,0,0,0,1.30012049207304,0,0,0,0,0,0,0,0.0852266274161009,0,0.826424576804891,0.384380134730212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42793898803392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.865999014529609,0,0,6.40177845282098,1.29151611801369,5.05414427002877,1.33029046061003,6.43225520579487,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.92359005739301,10.690728509975,13.8222315944654,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,1.57829449019094,0,0,0,0,0,0,0,0.724999575434793,0,0,1.18193840883968,0.344743373241465,0,0,0.885741385813839,0.120596438625408,0,0.110579259931225,0,0,0,3.90386483980089,9.38793153746324,0,0.46112780877612,60.0478641101376,5.3237212241784,5.74202087517455,1.92354946143911,18.6562171606522,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0.782658475728359,0,0,0,0,0,0,0.103688191397247,0,0,0,0,0,0,0,0.0979923974143777,0,2.62090002363045,0,0,0,0,22.5014518253133,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0.798716001995964,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0.315222829196793,0,0,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0.258565912723101,0.13223260174269,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,1.25643277000187,0,0,0,0.573409195690071,0.221858103073705,0.0620964029413835,0,0,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0.295710299979268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.319267718114302,0.41023272848151,0.252071696221718,0,0.484426936895553,1.42769420259154,0,0,0,0,0,0,0,0,0,0,2.3571602503328,0.818859587550484,0,0.0675375846183947,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0.455324382702595,17.1195574413893,0,0,0.135939465953663,0.0657727735628491,0,0,2.19780659981439,0,0,0,0,0,0,0,0,0,0,0.828864656652147,1.0243108625637,18.6640108689805,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233939463462106,0,0,0,0.109940516745429,0,0,0.218559560503957,1.41095188908457,0.980593287015622,0,0.392616934229891,0,0.8453114551668,0,0,0.0644578879735772,0,0,0,0,0,0,0.286679166302903,0,0,0,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0,0,1.65833887891756,0,7.03672140273237,0,0.0645889098360061,0.372448285775147,0.448527450322454,0,0,17.6350565796539,8.21359922604674,9.83339974012978,3.22749924267044,0.332660356546013,0,0,0,0,2.34640942403454,0.366724332548599,9.35861210126198,3.32878387092756,0,0 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|phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,0,0,6.11635841964482,3.4289707169699,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0.154816123316076,0,0.30120591877825,0.739508020333575,0,0,0,0.553995408531877,0,0,0.223915474239924,0,0,0,0,0,0,0,0.309706370895104,0.575384784644301,0.256160706529101,0,0.344745680736619,0,0,0.376484679085209,0,0,0.306083892370903,0,0,0.329851300186716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16072558669708,0.285012743741249,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0.0654895377488563,0,2.59549109949101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0,0,0.140450806702248,0,0,0.206651562351531,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,1.09098448236334,0,0,0.132529768321485,0.116193942869518,0.932949495138334,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219500570817251,0,0.402115889646523,0.277765335475589,0,0,0,0,0,0.144366447761074,0,0,0,0,0.246217006087397,0,0.148631162288728,0.93733833986777,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0.106727557803444,6.66880657181771,13.3148351608398,12.7003923198466,0.496215615637554,0,0.280660094433074,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0.460404944679482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.3463219434655,0,0,0,1.30012049207304,0,0,0,0,0,0,0,0.0852266274161009,0,0.826424576804891,0.384380134730212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42793898803392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.865999014529609,0,0,6.40177845282098,1.29151611801369,5.05414427002877,1.33029046061003,6.43225520579487,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.92359005739301,10.690728509975,13.8222315944654,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,1.57829449019094,0,0,0,0,0,0,0,0.724999575434793,0,0,1.18193840883968,0.344743373241465,0,0,0.885741385813839,0.120596438625408,0,0.110579259931225,0,0,0,3.90386483980089,9.38793153746324,0,0.46112780877612,60.0478641101376,5.3237212241784,5.74202087517455,1.92354946143911,18.6562171606522,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0.782658475728359,0,0,0,0,0,0,0.103688191397247,0,0,0,0,0,0,0,0.0979923974143777,0,2.62090002363045,0,0,0,0,22.5014518253133,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0.798716001995964,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0.315222829196793,0,0,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0.258565912723101,0.13223260174269,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,1.25643277000187,0,0,0,0.573409195690071,0.221858103073705,0.0620964029413835,0,0,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0.295710299979268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.319267718114302,0.41023272848151,0.252071696221718,0,0.484426936895553,1.42769420259154,0,0,0,0,0,0,0,0,0,0,2.3571602503328,0.818859587550484,0,0.0675375846183947,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0.455324382702595,17.1195574413893,0,0,0.135939465953663,0.0657727735628491,0,0,2.19780659981439,0,0,0,0,0,0,0,0,0,0,0.828864656652147,1.0243108625637,18.6640108689805,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233939463462106,0,0,0,0.109940516745429,0,0,0.218559560503957,1.41095188908457,0.980593287015622,0,0.392616934229891,0,0.8453114551668,0,0,0.0644578879735772,0,0,0,0,0,0,0.286679166302903,0,0,0,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0,0,1.65833887891756,0,7.03672140273237,0,0.0645889098360061,0.372448285775147,0.448527450322454,0,0,17.6350565796539,8.21359922604674,9.83339974012978,3.22749924267044,0.332660356546013,0,0,0,0,2.34640942403454,0.366724332548599,9.35861210126198,3.32878387092756,0,0 | ||
|short_description=p@chr18:5410605..5410661,- | |short_description=p@chr18:5410605..5410661,- | ||
}} | }} |
Latest revision as of 01:26, 26 July 2015
Short description: | p@chr18:5410605..5410661, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:5410605..5410661, - |
Coexpression cluster: | C83_choriocarcinoma_pancreatic_placenta_chorionic_HES3GFP_testicular_amniotic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 7.09e-27 | 19 |
transitional epithelial cell | 1.93e-17 | 4 |
urothelial cell | 1.93e-17 | 4 |
placental epithelial cell | 1.22e-14 | 3 |
chorionic membrane mesenchymal stem cell | 3.76e-14 | 3 |
amniotic epithelial cell | 7.19e-10 | 2 |
amnion mesenchymal stem cell | 5.71e-09 | 5 |
acinar cell | 2.47e-08 | 5 |
protein secreting cell | 5.16e-07 | 6 |
acinar cell of salivary gland | 8.06e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.18e-44 | 14 |
membranous layer | 1.18e-44 | 14 |
chorion | 2.02e-31 | 7 |
extraembryonic structure | 3.05e-29 | 24 |
placenta | 4.82e-19 | 4 |
allantois | 4.82e-19 | 4 |
amnion | 3.37e-16 | 7 |
egg chorion | 3.76e-14 | 3 |
somatic layer of lateral plate mesoderm | 3.86e-14 | 8 |
urothelium | 5.51e-14 | 5 |
organ component layer | 5.85e-12 | 66 |
transitional epithelium | 1.12e-11 | 6 |
renal system | 1.03e-10 | 48 |
internal genitalia | 2.11e-10 | 25 |
embryonic uterus | 2.22e-09 | 22 |
internal female genitalia | 2.67e-09 | 22 |
urinary system structure | 3.65e-09 | 47 |
orifice | 2.39e-08 | 36 |
uterus | 2.41e-07 | 21 |
endoderm-derived structure | 3.35e-07 | 160 |
endoderm | 3.35e-07 | 160 |
presumptive endoderm | 3.35e-07 | 160 |
tongue | 3.40e-07 | 3 |
gustatory system | 3.40e-07 | 3 |
future tongue | 3.40e-07 | 3 |
oral opening | 9.33e-07 | 22 |