FFCP PHASE1:Hg19::chr17:46806035..46806059,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10481 | |EntrezGene=10481 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5112 | |HGNC=5112 | ||
|TSSclassifier=strong | |||
|UniProt=Q4KR72,Q92826 | |UniProt=Q4KR72,Q92826 | ||
|association_with_transcript=51bp_to_NM_006361,uc002ioa.2_5end | |association_with_transcript=51bp_to_NM_006361,uc002ioa.2_5end | ||
|cluster_id=chr17:46806035..46806059,- | |||
|coexpression_cluster_id=C2415 | |coexpression_cluster_id=C2415 | ||
|description=CAGE_peak_2_at_HOXB13_5end | |description=CAGE_peak_2_at_HOXB13_5end | ||
|id=chr17:46806035..46806059,- | |id=chr17:46806035..46806059,- | ||
|ontology_enrichment_celltype=CL:0000066!1.06e-09!254;CL:0000148!2.93e-08!10;CL:0000541!2.93e-08!10 | |ontology_enrichment_celltype=CL:0000066!1.06e-09!254;CL:0000148!2.93e-08!10;CL:0000541!2.93e-08!10 | ||
|ontology_enrichment_celltype_v019=CL:0002567;9.56e-17;3!CL:0000148;3.63e-13;10!CL:0000147;2.55e-09;14!CL:0002231;1.60e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002567,9.33e-17,3;CL:0000148,3.64e-13,10;CL:0000541,3.64e-13,10;CL:0000147,2.56e-09,14;CL:0002231,1.43e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.65e-09;29!UBERON:0009847;3.35e-08;3!UBERON:0003353;3.35e-08;3 | |||
|ontology_enrichment_disease=DOID:0050687!8.12e-25!143;DOID:14566!1.45e-23!239;DOID:162!1.14e-22!235;DOID:305!3.08e-15!106;DOID:3119!5.02e-07!14;DOID:299!5.59e-07!25 | |ontology_enrichment_disease=DOID:0050687!8.12e-25!143;DOID:14566!1.45e-23!239;DOID:162!1.14e-22!235;DOID:305!3.08e-15!106;DOID:3119!5.02e-07!14;DOID:299!5.59e-07!25 | ||
|ontology_enrichment_disease_v019=DOID:171;2.21e-18;10!DOID:3095;5.13e-08;22!DOID:2994;5.13e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,1.79e-18,10;DOID:0050687,2.36e-13,143;DOID:3095,4.69e-08,22;DOID:2994,4.69e-08,22;DOID:162,5.67e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0001737!1.44e-14!9;UBERON:0004921!1.37e-11!129;UBERON:0004185!1.37e-11!129;UBERON:0004119!3.70e-10!169;UBERON:0000925!3.70e-10!169;UBERON:0006595!3.70e-10!169;UBERON:0005409!2.32e-09!35;UBERON:0000160!3.28e-09!27;UBERON:0000077!3.57e-09!130;UBERON:0001007!6.35e-09!155;UBERON:0001555!6.35e-09!155;UBERON:0007026!6.35e-09!155;UBERON:0000059!1.75e-08!11;UBERON:0001046!1.99e-08!19;UBERON:0001557!3.70e-08!19;UBERON:0001052!5.43e-07!4;UBERON:0008947!9.10e-07!38;UBERON:0003258!9.10e-07!38 | |ontology_enrichment_uberon=UBERON:0001737!1.44e-14!9;UBERON:0004921!1.37e-11!129;UBERON:0004185!1.37e-11!129;UBERON:0004119!3.70e-10!169;UBERON:0000925!3.70e-10!169;UBERON:0006595!3.70e-10!169;UBERON:0005409!2.32e-09!35;UBERON:0000160!3.28e-09!27;UBERON:0000077!3.57e-09!130;UBERON:0001007!6.35e-09!155;UBERON:0001555!6.35e-09!155;UBERON:0007026!6.35e-09!155;UBERON:0000059!1.75e-08!11;UBERON:0001046!1.99e-08!19;UBERON:0001557!3.70e-08!19;UBERON:0001052!5.43e-07!4;UBERON:0008947!9.10e-07!38;UBERON:0003258!9.10e-07!38 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.26e-25;9!UBERON:0001557;2.26e-25;9!UBERON:0002346;1.62e-21;4!UBERON:0000923;1.62e-21;4!UBERON:0010316;1.62e-21;4!UBERON:0005291;1.62e-21;4!UBERON:0002050;3.03e-17;5!UBERON:0005423;3.03e-17;5!UBERON:0002367;1.07e-07;11!UBERON:0010147;1.07e-07;11!UBERON:0000059;1.19e-07;11!UBERON:0003937;4.66e-07;12!UBERON:0005399;4.66e-07;12!UBERON:0000072;7.80e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.14e-25,9;UBERON:0001557,1.37e-11,19;UBERON:0001046,3.17e-09,19;UBERON:0004921,2.42e-08,118;UBERON:0002367,1.02e-07,11;UBERON:0010147,1.02e-07,11;UBERON:0009846,1.02e-07,11;UBERON:0003353,1.02e-07,11;UBERON:0004902,1.02e-07,11;UBERON:0003820,1.02e-07,11;UBERON:0009847,1.02e-07,11;UBERON:0000059,1.17e-07,11;UBERON:0003937,4.45e-07,12;UBERON:0005399,4.45e-07,12;UBERON:0008947,5.45e-07,38;UBERON:0003258,5.45e-07,38;UBERON:0004119,5.93e-07,160;UBERON:0000925,5.93e-07,160;UBERON:0006595,5.93e-07,160 | |||
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| ||
|short_description=p2@HOXB13 | |short_description=p2@HOXB13 | ||
}} | }} |
Latest revision as of 17:33, 15 September 2015
Short description: | p2@HOXB13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HOXB13_5end |
Coexpression cluster: | C2415_prostate_neuroepithelioma_neuroectodermal_rhabdomyosarcoma_Melanocyte_carcinoid_argyrophil |
Association with transcript: | 51bp_to_NM_006361, uc002ioa.2_5end |
EntrezGene: | HOXB13 |
HGNC: | 5112 |
UniProt: | Q4KR72Q92826 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
light melanocyte | 9.33e-17 | 3 |
melanocyte | 3.64e-13 | 10 |
melanoblast | 3.64e-13 | 10 |
pigment cell | 2.56e-09 | 14 |
epithelial cell of prostate | 1.43e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
larynx | 2.14e-25 | 9 |
upper respiratory tract | 1.37e-11 | 19 |
hindgut | 3.17e-09 | 19 |
subdivision of digestive tract | 2.42e-08 | 118 |
prostate gland | 1.02e-07 | 11 |
male accessory sex gland | 1.02e-07 | 11 |
embryonic cloacal epithelium | 1.02e-07 | 11 |
epithelium of hindgut | 1.02e-07 | 11 |
urogenital sinus epithelium | 1.02e-07 | 11 |
prostate bud | 1.02e-07 | 11 |
prostate field | 1.02e-07 | 11 |
large intestine | 1.17e-07 | 11 |
sex gland | 4.45e-07 | 12 |
male reproductive gland | 4.45e-07 | 12 |
respiratory primordium | 5.45e-07 | 38 |
endoderm of foregut | 5.45e-07 | 38 |
endoderm-derived structure | 5.93e-07 | 160 |
endoderm | 5.93e-07 | 160 |
presumptive endoderm | 5.93e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 1.79e-18 | 10 |
cell type cancer | 2.36e-13 | 143 |
germ cell and embryonal cancer | 4.69e-08 | 22 |
germ cell cancer | 4.69e-08 | 22 |
cancer | 5.67e-07 | 235 |