FFCP PHASE1:Hg19::chr13:76335037..76335056,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4008 | |EntrezGene=4008 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6646 | |HGNC=6646 | ||
|TSSclassifier=strong | |||
|UniProt=E9PLH4,Q8WWI1 | |UniProt=E9PLH4,Q8WWI1 | ||
|association_with_transcript=240bp_to_ENST00000465261,NM_015842,uc001vjv.2_5end | |association_with_transcript=240bp_to_ENST00000465261,NM_015842,uc001vjv.2_5end | ||
|cluster_id=chr13:76335037..76335056,+ | |||
|coexpression_cluster_id=C25 | |coexpression_cluster_id=C25 | ||
|description=CAGE_peak_12_at_LMO7_5end | |description=CAGE_peak_12_at_LMO7_5end | ||
|id=chr13:76335037..76335056,+ | |id=chr13:76335037..76335056,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0004161;6.34e-10;11!UBERON:0009497;2.39e-08;13!UBERON:0006595;1.27e-07;86 | |||
|ontology_enrichment_disease=DOID:305!2.48e-14!106;DOID:0050687!1.42e-07!143 | |ontology_enrichment_disease=DOID:305!2.48e-14!106;DOID:0050687!1.42e-07!143 | ||
|ontology_enrichment_disease_v019=DOID:299;1.19e-09;25!DOID:4929;1.42e-09;2!DOID:3493;3.21e-09;2!DOID:3119;1.34e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:299,1.22e-09,25;DOID:4929,2.01e-09,2;DOID:3493,3.50e-09,2;DOID:3119,1.37e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.07e-22!169;UBERON:0000925!1.07e-22!169;UBERON:0006595!1.07e-22!169;UBERON:0004921!3.42e-22!129;UBERON:0004185!3.42e-22!129;UBERON:0001007!1.70e-20!155;UBERON:0001555!1.70e-20!155;UBERON:0007026!1.70e-20!155;UBERON:0000077!4.48e-18!130;UBERON:0002619!6.00e-14!22;UBERON:0007023!6.60e-14!115;UBERON:0001950!7.45e-14!20;UBERON:0001869!6.42e-13!32;UBERON:0000481!3.01e-12!347;UBERON:0000065!3.03e-12!53;UBERON:0001893!8.74e-12!34;UBERON:0002780!1.00e-11!41;UBERON:0001890!1.00e-11!41;UBERON:0006240!1.00e-11!41;UBERON:0000956!1.13e-11!25;UBERON:0000203!1.13e-11!25;UBERON:0003080!2.82e-11!42;UBERON:0002791!2.92e-11!33;UBERON:0002020!9.39e-11!34;UBERON:0003528!9.39e-11!34;UBERON:0001041!1.09e-10!98;UBERON:0000064!1.79e-10!219;UBERON:0005911!3.45e-10!82;UBERON:0001737!3.73e-09!9;UBERON:0001557!7.11e-09!19;UBERON:0008947!9.31e-09!38;UBERON:0003258!9.31e-09!38;UBERON:0005409!1.02e-08!35;UBERON:0000062!1.10e-08!511;UBERON:0001004!2.83e-08!72;UBERON:0003929!3.78e-08!54;UBERON:0001046!3.81e-08!19;UBERON:0000072!1.00e-07!46;UBERON:0000160!2.96e-07!27;UBERON:0001049!3.39e-07!57;UBERON:0005068!3.39e-07!57;UBERON:0006241!3.39e-07!57;UBERON:0007135!3.39e-07!57;UBERON:0005153!4.44e-07!37 | |ontology_enrichment_uberon=UBERON:0004119!1.07e-22!169;UBERON:0000925!1.07e-22!169;UBERON:0006595!1.07e-22!169;UBERON:0004921!3.42e-22!129;UBERON:0004185!3.42e-22!129;UBERON:0001007!1.70e-20!155;UBERON:0001555!1.70e-20!155;UBERON:0007026!1.70e-20!155;UBERON:0000077!4.48e-18!130;UBERON:0002619!6.00e-14!22;UBERON:0007023!6.60e-14!115;UBERON:0001950!7.45e-14!20;UBERON:0001869!6.42e-13!32;UBERON:0000481!3.01e-12!347;UBERON:0000065!3.03e-12!53;UBERON:0001893!8.74e-12!34;UBERON:0002780!1.00e-11!41;UBERON:0001890!1.00e-11!41;UBERON:0006240!1.00e-11!41;UBERON:0000956!1.13e-11!25;UBERON:0000203!1.13e-11!25;UBERON:0003080!2.82e-11!42;UBERON:0002791!2.92e-11!33;UBERON:0002020!9.39e-11!34;UBERON:0003528!9.39e-11!34;UBERON:0001041!1.09e-10!98;UBERON:0000064!1.79e-10!219;UBERON:0005911!3.45e-10!82;UBERON:0001737!3.73e-09!9;UBERON:0001557!7.11e-09!19;UBERON:0008947!9.31e-09!38;UBERON:0003258!9.31e-09!38;UBERON:0005409!1.02e-08!35;UBERON:0000062!1.10e-08!511;UBERON:0001004!2.83e-08!72;UBERON:0003929!3.78e-08!54;UBERON:0001046!3.81e-08!19;UBERON:0000072!1.00e-07!46;UBERON:0000160!2.96e-07!27;UBERON:0001049!3.39e-07!57;UBERON:0005068!3.39e-07!57;UBERON:0006241!3.39e-07!57;UBERON:0007135!3.39e-07!57;UBERON:0005153!4.44e-07!37 | ||
|ontology_enrichment_uberon_v019=UBERON:0005409;1.34e-40;22!UBERON:0000160;8.36e-34;17!UBERON:0004921;3.78e-30;33!UBERON:0000059;3.18e-19;11!UBERON:0002108;6.56e-15;4!UBERON:0004907;1.84e-14;5!UBERON:0001155;1.62e-12;9!UBERON:0001007;1.98e-11;81!UBERON:0001555;2.38e-11;54!UBERON:0001052;1.40e-10;4!UBERON:0002423;8.19e-10;25!UBERON:0000945;2.00e-08;5!UBERON:0010039;2.00e-08;5!UBERON:0002114;8.62e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,1.44e-35,25;UBERON:0000160,8.18e-34,17;UBERON:0000059,2.53e-19,11;UBERON:0004921,8.21e-19,118;UBERON:0001007,5.73e-17,145;UBERON:0001555,5.73e-17,145;UBERON:0007026,5.73e-17,145;UBERON:0002108,8.57e-15,4;UBERON:0004119,8.91e-15,160;UBERON:0000925,8.91e-15,160;UBERON:0006595,8.91e-15,160;UBERON:0004907,1.50e-14,5;UBERON:0001155,1.58e-12,9;UBERON:0011216,1.91e-11,223;UBERON:0001052,1.10e-10,4;UBERON:0009497,9.84e-10,25;UBERON:0000015,9.84e-10,25;UBERON:0002423,9.84e-10,25;UBERON:0006235,9.84e-10,25;UBERON:0004161,9.84e-10,25;UBERON:0009854,2.61e-08,23;UBERON:0003929,1.41e-07,54;UBERON:0009856,3.06e-07,26 | |||
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| ||
|short_description=p12@LMO7 | |short_description=p12@LMO7 | ||
}} | }} |
Latest revision as of 00:13, 18 September 2015
Short description: | p12@LMO7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_LMO7_5end |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | 240bp_to_ENST00000465261, NM_015842, uc001vjv.2_5end |
EntrezGene: | LMO7 |
HGNC: | 6646 |
UniProt: | E9PLH4Q8WWI1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 1.44e-35 | 25 |
intestine | 8.18e-34 | 17 |
large intestine | 2.53e-19 | 11 |
subdivision of digestive tract | 8.21e-19 | 118 |
digestive system | 5.73e-17 | 145 |
digestive tract | 5.73e-17 | 145 |
primitive gut | 5.73e-17 | 145 |
small intestine | 8.57e-15 | 4 |
endoderm-derived structure | 8.91e-15 | 160 |
endoderm | 8.91e-15 | 160 |
presumptive endoderm | 8.91e-15 | 160 |
lower digestive tract | 1.50e-14 | 5 |
colon | 1.58e-12 | 9 |
organ system subdivision | 1.91e-11 | 223 |
rectum | 1.10e-10 | 4 |
epithelium of foregut-midgut junction | 9.84e-10 | 25 |
anatomical boundary | 9.84e-10 | 25 |
hepatobiliary system | 9.84e-10 | 25 |
foregut-midgut junction | 9.84e-10 | 25 |
septum transversum | 9.84e-10 | 25 |
digestive tract diverticulum | 2.61e-08 | 23 |
gut epithelium | 1.41e-07 | 54 |
sac | 3.06e-07 | 26 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 1.22e-09 | 25 |
tubular adenocarcinoma | 2.01e-09 | 2 |
signet ring cell adenocarcinoma | 3.50e-09 | 2 |
gastrointestinal system cancer | 1.37e-07 | 14 |