FFCP PHASE1:Hg19::chr12:57351371..57351397,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8608 | |EntrezGene=8608 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=29674 | |HGNC=29674 | ||
|TSSclassifier=strong | |||
|UniProt=O75452 | |UniProt=O75452 | ||
|association_with_transcript=20bp_to_NM_003708,uc001smi.3,uc009zpa.2_5end | |association_with_transcript=20bp_to_NM_003708,uc001smi.3,uc009zpa.2_5end | ||
|cluster_id=chr12:57351371..57351397,- | |||
|coexpression_cluster_id=C5 | |coexpression_cluster_id=C5 | ||
|description=CAGE_peak_1_at_RDH16_5end | |description=CAGE_peak_1_at_RDH16_5end | ||
|id=chr12:57351371..57351397,- | |id=chr12:57351371..57351397,- | ||
|ontology_enrichment_celltype=CL:0000181!2.11e-19!12;CL:0000417!2.11e-19!12;CL:0000668!2.11e-19!12;CL:0000414!2.11e-19!12;CL:0000412!2.11e-19!12;CL:0000182!2.11e-19!12 | |ontology_enrichment_celltype=CL:0000181!2.11e-19!12;CL:0000417!2.11e-19!12;CL:0000668!2.11e-19!12;CL:0000414!2.11e-19!12;CL:0000412!2.11e-19!12;CL:0000182!2.11e-19!12 | ||
|ontology_enrichment_celltype_v019=CL:0000182;2.41e-19;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.41e-19,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;5.41e-10;11!UBERON:0009497;1.34e-08;13 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!7.43e-27!19;UBERON:0006925!7.43e-27!19;UBERON:0008836!7.43e-27!19;UBERON:0008835!3.55e-23!22;UBERON:0003894!3.55e-23!22;UBERON:0009854!3.67e-22!23;UBERON:0007499!2.24e-20!25;UBERON:0009497!2.24e-20!25;UBERON:0000015!2.24e-20!25;UBERON:0002423!2.24e-20!25;UBERON:0006235!2.24e-20!25;UBERON:0004161!2.24e-20!25;UBERON:0005057!1.38e-19!26;UBERON:0009856!1.38e-19!26;UBERON:0002365!2.14e-16!31;UBERON:0002330!2.14e-16!31;UBERON:0000998!1.78e-15!1;UBERON:0006868!1.78e-15!1;UBERON:0002530!8.88e-15!59;UBERON:0002368!1.70e-14!35;UBERON:0003929!1.77e-12!54;UBERON:0005172!2.94e-12!55;UBERON:0005173!2.94e-12!55;UBERON:0000949!3.22e-11!45;UBERON:0002417!5.30e-11!61;UBERON:0000916!5.30e-11!61;UBERON:0005911!4.90e-08!82;UBERON:0009569!2.29e-07!113 | |ontology_enrichment_uberon=UBERON:0002107!7.43e-27!19;UBERON:0006925!7.43e-27!19;UBERON:0008836!7.43e-27!19;UBERON:0008835!3.55e-23!22;UBERON:0003894!3.55e-23!22;UBERON:0009854!3.67e-22!23;UBERON:0007499!2.24e-20!25;UBERON:0009497!2.24e-20!25;UBERON:0000015!2.24e-20!25;UBERON:0002423!2.24e-20!25;UBERON:0006235!2.24e-20!25;UBERON:0004161!2.24e-20!25;UBERON:0005057!1.38e-19!26;UBERON:0009856!1.38e-19!26;UBERON:0002365!2.14e-16!31;UBERON:0002330!2.14e-16!31;UBERON:0000998!1.78e-15!1;UBERON:0006868!1.78e-15!1;UBERON:0002530!8.88e-15!59;UBERON:0002368!1.70e-14!35;UBERON:0003929!1.77e-12!54;UBERON:0005172!2.94e-12!55;UBERON:0005173!2.94e-12!55;UBERON:0000949!3.22e-11!45;UBERON:0002417!5.30e-11!61;UBERON:0000916!5.30e-11!61;UBERON:0005911!4.90e-08!82;UBERON:0009569!2.29e-07!113 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;8.91e-33;19!UBERON:0006925;8.91e-33;19!UBERON:0002423;5.10e-25;25!UBERON:0002365;3.37e-20;31!UBERON:0002330;3.37e-20;31!UBERON:0002368;1.85e-17;33!UBERON:0000949;1.08e-12;43!UBERON:0005172;3.50e-09;52!UBERON:0005173;3.50e-09;52!UBERON:0002417;3.91e-07;58!UBERON:0000916;3.91e-07;58 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,9.21e-33,19;UBERON:0006925,9.21e-33,19;UBERON:0008836,9.21e-33,19;UBERON:0008835,2.33e-28,22;UBERON:0003894,2.33e-28,22;UBERON:0009854,3.82e-27,23;UBERON:0007499,5.23e-25,25;UBERON:0009497,5.23e-25,25;UBERON:0000015,5.23e-25,25;UBERON:0002423,5.23e-25,25;UBERON:0006235,5.23e-25,25;UBERON:0004161,5.23e-25,25;UBERON:0009856,4.62e-24,26;UBERON:0002365,3.03e-20,31;UBERON:0002330,3.03e-20,31;UBERON:0002368,5.68e-18,35;UBERON:0000949,4.76e-14,45;UBERON:0003929,9.42e-12,54;UBERON:0005172,9.42e-12,54;UBERON:0005173,9.42e-12,54;UBERON:0002530,8.91e-11,59;UBERON:0002417,1.34e-10,60;UBERON:0000916,1.34e-10,60;UBERON:0005911,8.31e-08,82;UBERON:0001041,2.29e-07,87 | |||
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|short_description=p1@RDH16 | |short_description=p1@RDH16 | ||
}} | }} |
Latest revision as of 12:31, 19 September 2015
Short description: | p1@RDH16 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RDH16_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 20bp_to_NM_003708, uc001smi.3, uc009zpa.2_5end |
EntrezGene: | RDH16 |
HGNC: | 29674 |
UniProt: | O75452 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.41e-19 | 12 |
Ontology term | p-value | n |
---|---|---|
liver | 9.21e-33 | 19 |
digestive gland | 9.21e-33 | 19 |
liver bud | 9.21e-33 | 19 |
hepatic diverticulum | 2.33e-28 | 22 |
liver primordium | 2.33e-28 | 22 |
digestive tract diverticulum | 3.82e-27 | 23 |
epithelial sac | 5.23e-25 | 25 |
epithelium of foregut-midgut junction | 5.23e-25 | 25 |
anatomical boundary | 5.23e-25 | 25 |
hepatobiliary system | 5.23e-25 | 25 |
foregut-midgut junction | 5.23e-25 | 25 |
septum transversum | 5.23e-25 | 25 |
sac | 4.62e-24 | 26 |
exocrine gland | 3.03e-20 | 31 |
exocrine system | 3.03e-20 | 31 |
endocrine gland | 5.68e-18 | 35 |
endocrine system | 4.76e-14 | 45 |
gut epithelium | 9.42e-12 | 54 |
abdomen element | 9.42e-12 | 54 |
abdominal segment element | 9.42e-12 | 54 |
gland | 8.91e-11 | 59 |
abdominal segment of trunk | 1.34e-10 | 60 |
abdomen | 1.34e-10 | 60 |
endo-epithelium | 8.31e-08 | 82 |
foregut | 2.29e-07 | 87 |