FFCP PHASE1:Hg19::chr12:101869096..101869118,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=121599 | |EntrezGene=121599 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29549 | |HGNC=29549 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-80bp_to_ENST00000551346,uc001tid.2_5end | |association_with_transcript=-80bp_to_ENST00000551346,uc001tid.2_5end | ||
|cluster_id=chr12:101869096..101869118,+ | |||
|coexpression_cluster_id=C178 | |coexpression_cluster_id=C178 | ||
|description=CAGE_peak_1_at_SPIC_5end | |description=CAGE_peak_1_at_SPIC_5end | ||
|id=chr12:101869096..101869118,+ | |id=chr12:101869096..101869118,+ | ||
|ontology_enrichment_celltype=CL:0002393!2.79e-12!9;CL:0002397!2.79e-12!9;CL:0002619!9.45e-11!3;CL:0000875!3.05e-10!3;CL:0002396!3.05e-10!3;CL:0000738!7.44e-10!140;CL:0002087!1.77e-09!119;CL:0002031!5.29e-08!124;CL:0002194!2.42e-07!63;CL:0000576!2.42e-07!63;CL:0000040!2.42e-07!63;CL:0000559!2.42e-07!63;CL:0002009!5.08e-07!65;CL:0000037!7.70e-07!172;CL:0000566!7.70e-07!172;CL:0000988!9.59e-07!182 | |ontology_enrichment_celltype=CL:0002393!2.79e-12!9;CL:0002397!2.79e-12!9;CL:0002619!9.45e-11!3;CL:0000875!3.05e-10!3;CL:0002396!3.05e-10!3;CL:0000738!7.44e-10!140;CL:0002087!1.77e-09!119;CL:0002031!5.29e-08!124;CL:0002194!2.42e-07!63;CL:0000576!2.42e-07!63;CL:0000040!2.42e-07!63;CL:0000559!2.42e-07!63;CL:0002009!5.08e-07!65;CL:0000037!7.70e-07!172;CL:0000566!7.70e-07!172;CL:0000988!9.59e-07!182 | ||
|ontology_enrichment_celltype_v019=CL:0002619;2.52e-20;3!CL:0000875;2.07e-09;3!CL:0002396;2.07e-09;3!CL:0000785;5.70e-08;1!CL:0000819;5.70e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002619,2.28e-20,3;CL:0002393,1.46e-11,9;CL:0002397,1.46e-11,9;CL:0000875,1.94e-09,3;CL:0002396,1.94e-09,3;CL:0000819,6.10e-08,1 | |||
|ontology_enrichment_development_v019=UBERON:0004872;2.27e-09;7!UBERON:0001045;8.51e-08;1!UBERON:0009143;1.49e-07;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0060073;5.70e-08;1!DOID:8675;5.70e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060073,6.10e-08,1;DOID:8675,6.10e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0004177!7.41e-12!7;UBERON:0002405!8.49e-12!115;UBERON:0002106!1.26e-10!3;UBERON:0004854!1.26e-10!3;UBERON:0009034!1.26e-10!3;UBERON:0002095!1.26e-10!3;UBERON:0004782!1.26e-10!3;UBERON:0003281!1.26e-10!3;UBERON:0009664!1.26e-10!3;UBERON:0002296!1.26e-10!3;UBERON:0005602!1.26e-10!3;UBERON:0001179!1.26e-10!3;UBERON:0006293!1.26e-10!3;UBERON:0002193!8.94e-10!112;UBERON:0002390!5.25e-09!102;UBERON:0003061!5.25e-09!102;UBERON:0005057!9.67e-09!26;UBERON:0003408!9.63e-08!10;UBERON:0007023!2.98e-07!115;UBERON:0001829!4.37e-07!2 | |ontology_enrichment_uberon=UBERON:0004177!7.41e-12!7;UBERON:0002405!8.49e-12!115;UBERON:0002106!1.26e-10!3;UBERON:0004854!1.26e-10!3;UBERON:0009034!1.26e-10!3;UBERON:0002095!1.26e-10!3;UBERON:0004782!1.26e-10!3;UBERON:0003281!1.26e-10!3;UBERON:0009664!1.26e-10!3;UBERON:0002296!1.26e-10!3;UBERON:0005602!1.26e-10!3;UBERON:0001179!1.26e-10!3;UBERON:0006293!1.26e-10!3;UBERON:0002193!8.94e-10!112;UBERON:0002390!5.25e-09!102;UBERON:0003061!5.25e-09!102;UBERON:0005057!9.67e-09!26;UBERON:0003408!9.63e-08!10;UBERON:0007023!2.98e-07!115;UBERON:0001829!4.37e-07!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0004177;5.04e-22;5!UBERON:0005057;5.04e-22;5!UBERON:0002370;2.09e-14;2!UBERON:0005058;2.09e-14;2!UBERON:0009113;2.09e-14;2!UBERON:0002106;3.36e-10;3!UBERON:0002405;1.70e-08;27!UBERON:0000029;3.32e-08;1!UBERON:0002372;6.52e-08;1!UBERON:0001961;6.52e-08;1!UBERON:0001744;6.52e-08;1!UBERON:0001042;6.52e-08;1!UBERON:0001735;6.52e-08;1!UBERON:0001154;8.51e-08;1!UBERON:0001153;8.51e-08;1!UBERON:0009854;8.51e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,8.57e-16,7;UBERON:0005057,8.57e-16,7;UBERON:0002405,7.12e-11,93;UBERON:0002106,3.36e-10,3;UBERON:0004854,3.36e-10,3;UBERON:0009034,3.36e-10,3;UBERON:0002095,3.36e-10,3;UBERON:0004782,3.36e-10,3;UBERON:0003281,3.36e-10,3;UBERON:0009664,3.36e-10,3;UBERON:0002296,3.36e-10,3;UBERON:0005602,3.36e-10,3;UBERON:0001179,3.36e-10,3;UBERON:0006293,3.36e-10,3;UBERON:0002193,5.28e-09,108;UBERON:0000029,3.32e-08,1;UBERON:0004921,5.83e-08,118;UBERON:0002372,6.52e-08,1;UBERON:0001961,6.52e-08,1;UBERON:0001744,6.52e-08,1;UBERON:0001735,6.52e-08,1;UBERON:0001154,1.04e-07,1;UBERON:0001153,1.04e-07,1;UBERON:0001045,1.04e-07,1;UBERON:0002370,1.23e-07,4;UBERON:0005058,1.23e-07,4;UBERON:0009113,1.23e-07,4;UBERON:0003295,1.23e-07,4;UBERON:0005562,1.23e-07,4;UBERON:0002390,3.05e-07,98;UBERON:0003061,3.05e-07,98;UBERON:0001041,3.88e-07,87;UBERON:0009854,6.17e-07,23 | |||
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| ||
|short_description=p1@SPIC | |short_description=p1@SPIC | ||
}} | }} |
Latest revision as of 18:27, 15 September 2015
Short description: | p1@SPIC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SPIC_5end |
Coexpression cluster: | C178_spleen_liver_Hepatocyte_b_lymph_vein_thymus |
Association with transcript: | -80bp_to_ENST00000551346, uc001tid.2_5end |
EntrezGene: | SPIC |
HGNC: | 29549 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult endothelial progenitor cell | 2.28e-20 | 3 |
intermediate monocyte | 1.46e-11 | 9 |
CD14-positive, CD16-positive monocyte | 1.46e-11 | 9 |
non-classical monocyte | 1.94e-09 | 3 |
CD14-low, CD16-positive monocyte | 1.94e-09 | 3 |
B-1 B cell | 6.10e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 8.57e-16 | 7 |
immune organ | 8.57e-16 | 7 |
immune system | 7.12e-11 | 93 |
spleen | 3.36e-10 | 3 |
gastrointestinal system mesentery | 3.36e-10 | 3 |
stomach region | 3.36e-10 | 3 |
mesentery | 3.36e-10 | 3 |
gastrointestinal system serosa | 3.36e-10 | 3 |
mesentery of stomach | 3.36e-10 | 3 |
gut mesentery | 3.36e-10 | 3 |
dorsal mesentery | 3.36e-10 | 3 |
dorsal mesogastrium | 3.36e-10 | 3 |
peritoneal cavity | 3.36e-10 | 3 |
spleen primordium | 3.36e-10 | 3 |
hemolymphoid system | 5.28e-09 | 108 |
lymph node | 3.32e-08 | 1 |
subdivision of digestive tract | 5.83e-08 | 118 |
tonsil | 6.52e-08 | 1 |
mucosa-associated lymphoid tissue | 6.52e-08 | 1 |
lymphoid tissue | 6.52e-08 | 1 |
tonsillar ring | 6.52e-08 | 1 |
vermiform appendix | 1.04e-07 | 1 |
caecum | 1.04e-07 | 1 |
midgut | 1.04e-07 | 1 |
thymus | 1.23e-07 | 4 |
hemolymphoid system gland | 1.23e-07 | 4 |
thymic region | 1.23e-07 | 4 |
pharyngeal gland | 1.23e-07 | 4 |
thymus primordium | 1.23e-07 | 4 |
hematopoietic system | 3.05e-07 | 98 |
blood island | 3.05e-07 | 98 |
foregut | 3.88e-07 | 87 |
digestive tract diverticulum | 6.17e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
lymphatic system cancer | 6.10e-08 | 1 |
lymphosarcoma | 6.10e-08 | 1 |