FFCP PHASE1:Hg19::chr17:78083724..78083737,+: Difference between revisions
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|id=chr17:78083724..78083737,+
|short_description=p@chr17:78083724..78083737,+
|description=CAGE_peak_at_chr17:78083724..78083737,+
|association_with_transcript=NA
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr17:78083724..78083737,+ | |||
|coexpression_cluster_id=C171 | |||
|description=CAGE_peak_at_chr17:78083724..78083737,+ | |||
|id=chr17:78083724..78083737,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000123;4.32e-26;2!CL:0000242;4.32e-26;2!CL:0000312;2.66e-11;5!CL:0000240;1.22e-09;6!CL:0000311;1.22e-09;6!CL:0000079;1.22e-09;6!CL:0000237;1.22e-09;6!CL:0000362;7.48e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,4.32e-26,2;CL:0000312,2.66e-11,5;CL:0000240,1.22e-09,6;CL:0000311,1.22e-09,6;CL:0000079,1.22e-09,6;CL:0000237,1.22e-09,6;CL:0000036,1.22e-09,6;CL:0000357,1.22e-09,6;CL:0000114,1.22e-09,6;CL:0000362,7.48e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000357;1.22e-09;6!CL:0000114;1.22e-09;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5409;1.13e-13;4!DOID:1325;2.18e-08;7!DOID:3904;2.18e-08;7!DOID:3905;8.37e-07;9 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,1.13e-13,4;DOID:1325,2.18e-08,7;DOID:3904,2.18e-08,7;DOID:3905,8.37e-07,9 | |||
|ontology_enrichment_uberon=UBERON:0002370!2.68e-11!4;UBERON:0005058!2.68e-11!4;UBERON:0009113!2.68e-11!4;UBERON:0003295!2.68e-11!4;UBERON:0005562!2.68e-11!4;UBERON:0002372!6.00e-11!1;UBERON:0001961!6.00e-11!1;UBERON:0001744!6.00e-11!1;UBERON:0001735!6.00e-11!1;UBERON:0001042!1.18e-09!10;UBERON:0009145!1.18e-09!10;UBERON:0004807!5.63e-09!28;UBERON:0006562!7.99e-09!11;UBERON:0003351!8.10e-08!6;UBERON:0000072!1.81e-07!46;UBERON:0004177!8.13e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;2.56e-98;2!UBERON:0005058;2.56e-98;2!UBERON:0009113;2.56e-98;2!UBERON:0004177;3.31e-40;5!UBERON:0005057;3.31e-40;5!UBERON:0000077;2.22e-08;27!UBERON:0002405;2.22e-08;27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,6.60e-50,4;UBERON:0005058,6.60e-50,4;UBERON:0009113,6.60e-50,4;UBERON:0003295,6.60e-50,4;UBERON:0005562,6.60e-50,4;UBERON:0003351,9.87e-34,6;UBERON:0004177,4.21e-29,7;UBERON:0005057,4.21e-29,7;UBERON:0000974,9.44e-21,10;UBERON:0003408,9.44e-21,10;UBERON:0001042,9.44e-21,10;UBERON:0009145,9.44e-21,10;UBERON:0006562,5.63e-19,11;UBERON:0009722,5.63e-19,11;UBERON:0007690,5.63e-19,11;UBERON:0004807,9.46e-17,28;UBERON:0008814,4.81e-12,18;UBERON:0001557,1.81e-11,19;UBERON:0000072,2.31e-10,47;UBERON:0000065,3.93e-09,54;UBERON:0000077,7.15e-08,29;UBERON:0001004,6.92e-07,74 | |||
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|short_description=p@chr17:78083724..78083737,+ | |||
}} | }} |
Latest revision as of 22:28, 25 July 2015
Short description: | p@chr17:78083724..78083737, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:78083724..78083737, + |
Coexpression cluster: | C171_merkel_neuroblastoma_pineal_retinoblastoma_carcinoid_small_eye |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 4.32e-26 | 2 |
keratinocyte | 2.66e-11 | 5 |
stratified squamous epithelial cell | 1.22e-09 | 6 |
keratin accumulating cell | 1.22e-09 | 6 |
stratified epithelial cell | 1.22e-09 | 6 |
keratinizing barrier epithelial cell | 1.22e-09 | 6 |
epithelial fate stem cell | 1.22e-09 | 6 |
stratified epithelial stem cell | 1.22e-09 | 6 |
surface ectodermal cell | 1.22e-09 | 6 |
epidermal cell | 7.48e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
thymus | 6.60e-50 | 4 |
hemolymphoid system gland | 6.60e-50 | 4 |
thymic region | 6.60e-50 | 4 |
pharyngeal gland | 6.60e-50 | 4 |
thymus primordium | 6.60e-50 | 4 |
pharyngeal epithelium | 9.87e-34 | 6 |
hemopoietic organ | 4.21e-29 | 7 |
immune organ | 4.21e-29 | 7 |
neck | 9.44e-21 | 10 |
gland of gut | 9.44e-21 | 10 |
chordate pharynx | 9.44e-21 | 10 |
pharyngeal region of foregut | 9.44e-21 | 10 |
pharynx | 5.63e-19 | 11 |
entire pharyngeal arch endoderm | 5.63e-19 | 11 |
early pharyngeal endoderm | 5.63e-19 | 11 |
respiratory system epithelium | 9.46e-17 | 28 |
pharyngeal arch system | 4.81e-12 | 18 |
upper respiratory tract | 1.81e-11 | 19 |
segment of respiratory tract | 2.31e-10 | 47 |
respiratory tract | 3.93e-09 | 54 |
mixed endoderm/mesoderm-derived structure | 7.15e-08 | 29 |
respiratory system | 6.92e-07 | 74 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 1.13e-13 | 4 |
bronchus cancer | 2.18e-08 | 7 |
bronchogenic carcinoma | 2.18e-08 | 7 |
lung carcinoma | 8.37e-07 | 9 |