FFCP PHASE1:Hg19::chr11:119999506..119999529,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23650 | |EntrezGene=23650 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17274 | |HGNC=17274 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=31bp_to_uc010rzi.1_5end | |association_with_transcript=31bp_to_uc010rzi.1_5end | ||
|cluster_id=chr11:119999506..119999529,- | |||
|coexpression_cluster_id=C2102 | |coexpression_cluster_id=C2102 | ||
|description=CAGE_peak_7_at_TRIM29_5end | |description=CAGE_peak_7_at_TRIM29_5end | ||
|id=chr11:119999506..119999529,- | |id=chr11:119999506..119999529,- | ||
|ontology_enrichment_celltype=CL:0000066!4.04e-20!254;CL:0002076!1.26e-16!43;CL:0002251!1.52e-12!21;CL:0000223!6.21e-12!59;CL:0000622!5.42e-08!5;CL:0002159!7.76e-08!13 | |ontology_enrichment_celltype=CL:0000066!4.04e-20!254;CL:0002076!1.26e-16!43;CL:0002251!1.52e-12!21;CL:0000223!6.21e-12!59;CL:0000622!5.42e-08!5;CL:0002159!7.76e-08!13 | ||
|ontology_enrichment_celltype_v019=CL:0000622;1.97e-16;5!CL:0000154;1.20e-13;6!CL:0000150;1.45e-12;9!CL:0002577;2.87e-11;3!CL:0002623;1.27e-10;3!CL:0000349;1.29e-10;19!CL:0002159;5.66e-08;14!CL:0000575;7.35e-08;2!CL:0000317;1.65e-07;2!CL:1000448;1.65e-07;2!CL:0002308;1.65e-07;2!CL:0002140;1.65e-07;2!CL:0002537;4.37e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000622,3.92e-16,5;CL:0000066,5.73e-14,253;CL:0000154,2.12e-13,6;CL:0000150,2.63e-12,9;CL:0002577,2.42e-11,3;CL:0000349,1.09e-10,19;CL:0002623,1.96e-10,3;CL:0002159,6.63e-08,14;CL:0000575,7.11e-08,2;CL:0000317,2.15e-07,2;CL:1000448,2.15e-07,2;CL:0002308,2.15e-07,2;CL:0002140,2.15e-07,2;CL:0002537,4.51e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.82e-12;29 | |||
|ontology_enrichment_disease=DOID:305!5.99e-12!106;DOID:1749!6.77e-08!14;DOID:0050687!1.92e-07!143 | |ontology_enrichment_disease=DOID:305!5.99e-12!106;DOID:1749!6.77e-08!14;DOID:0050687!1.92e-07!143 | ||
|ontology_enrichment_disease_v019=DOID:1749;1.26e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,8.08e-11,106;DOID:1749,9.54e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0001004!2.44e-22!72;UBERON:0004119!1.09e-20!169;UBERON:0000925!1.09e-20!169;UBERON:0006595!1.09e-20!169;UBERON:0000065!5.13e-17!53;UBERON:0001557!5.22e-15!19;UBERON:0001737!1.62e-14!9;UBERON:0001007!1.19e-13!155;UBERON:0001555!1.19e-13!155;UBERON:0007026!1.19e-13!155;UBERON:0000077!1.52e-13!130;UBERON:0000072!4.57e-12!46;UBERON:0001041!9.36e-12!98;UBERON:0008947!1.05e-11!38;UBERON:0003258!1.05e-11!38;UBERON:0005631!2.00e-11!14;UBERON:0000158!2.00e-11!14;UBERON:0000166!2.09e-11!21;UBERON:0004921!1.09e-10!129;UBERON:0004185!1.09e-10!129;UBERON:0000161!5.96e-10!35;UBERON:0000062!7.32e-09!511;UBERON:0000165!1.01e-08!28;UBERON:0000930!1.01e-08!28;UBERON:0000064!5.12e-08!219;UBERON:0003124!1.80e-07!7;UBERON:0003100!4.34e-07!41;UBERON:0005795!6.00e-07!22;UBERON:0001987!7.84e-07!4;UBERON:0004340!7.84e-07!4;UBERON:0000344!9.77e-07!12 | |ontology_enrichment_uberon=UBERON:0001004!2.44e-22!72;UBERON:0004119!1.09e-20!169;UBERON:0000925!1.09e-20!169;UBERON:0006595!1.09e-20!169;UBERON:0000065!5.13e-17!53;UBERON:0001557!5.22e-15!19;UBERON:0001737!1.62e-14!9;UBERON:0001007!1.19e-13!155;UBERON:0001555!1.19e-13!155;UBERON:0007026!1.19e-13!155;UBERON:0000077!1.52e-13!130;UBERON:0000072!4.57e-12!46;UBERON:0001041!9.36e-12!98;UBERON:0008947!1.05e-11!38;UBERON:0003258!1.05e-11!38;UBERON:0005631!2.00e-11!14;UBERON:0000158!2.00e-11!14;UBERON:0000166!2.09e-11!21;UBERON:0004921!1.09e-10!129;UBERON:0004185!1.09e-10!129;UBERON:0000161!5.96e-10!35;UBERON:0000062!7.32e-09!511;UBERON:0000165!1.01e-08!28;UBERON:0000930!1.01e-08!28;UBERON:0000064!5.12e-08!219;UBERON:0003124!1.80e-07!7;UBERON:0003100!4.34e-07!41;UBERON:0005795!6.00e-07!22;UBERON:0001987!7.84e-07!4;UBERON:0004340!7.84e-07!4;UBERON:0000344!9.77e-07!12 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;6.02e-31;9!UBERON:0001557;6.02e-31;9!UBERON:0000072;1.19e-11;37!UBERON:0000065;6.70e-10;44!UBERON:0005631;1.18e-08;10!UBERON:0000158;1.18e-08;10!UBERON:0001987;1.51e-08;4!UBERON:0000305;3.58e-08;7!UBERON:0000478;4.14e-08;24!UBERON:0002419;1.65e-07;2!UBERON:0007771;1.65e-07;2!UBERON:0003297;1.65e-07;2!UBERON:0001821;1.65e-07;2!UBERON:0003487;1.65e-07;2!UBERON:0001820;1.65e-07;2!UBERON:0001004;6.85e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,5.95e-31,9;UBERON:0001557,9.41e-21,19;UBERON:0005631,5.03e-15,14;UBERON:0000158,5.03e-15,14;UBERON:0000072,3.85e-13,47;UBERON:0008947,1.80e-12,38;UBERON:0003258,1.80e-12,38;UBERON:0001004,5.37e-12,74;UBERON:0000065,5.69e-11,54;UBERON:0001041,7.58e-11,87;UBERON:0004119,1.87e-10,160;UBERON:0000925,1.87e-10,160;UBERON:0006595,1.87e-10,160;UBERON:0001987,1.33e-08,4;UBERON:0004340,1.33e-08,4;UBERON:0003124,2.05e-08,7;UBERON:0000305,3.11e-08,7;UBERON:0000478,3.65e-08,24;UBERON:0001007,2.01e-07,145;UBERON:0001555,2.01e-07,145;UBERON:0007026,2.01e-07,145;UBERON:0002419,2.15e-07,2;UBERON:0007771,2.15e-07,2;UBERON:0003297,2.15e-07,2;UBERON:0001821,2.15e-07,2;UBERON:0003487,2.15e-07,2;UBERON:0001820,2.15e-07,2;UBERON:0005089,2.15e-07,2;UBERON:0005088,2.15e-07,2;UBERON:0004871,3.36e-07,8;UBERON:0005795,9.41e-07,22 | |||
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| ||
|short_description=p7@TRIM29 | |short_description=p7@TRIM29 | ||
}} | }} |
Latest revision as of 04:50, 16 September 2015
Short description: | p7@TRIM29 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_TRIM29_5end |
Coexpression cluster: | C2102_amniotic_cervical_Placental_chorionic_Hep2_salivary_Corneal |
Association with transcript: | 31bp_to_uc010rzi.1_5end |
EntrezGene: | TRIM29 |
HGNC: | 17274 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
acinar cell | 3.92e-16 | 5 |
epithelial cell | 5.73e-14 | 253 |
protein secreting cell | 2.12e-13 | 6 |
glandular epithelial cell | 2.63e-12 | 9 |
placental epithelial cell | 2.42e-11 | 3 |
extraembryonic cell | 1.09e-10 | 19 |
acinar cell of salivary gland | 1.96e-10 | 3 |
general ecto-epithelial cell | 6.63e-08 | 14 |
corneal epithelial cell | 7.11e-08 | 2 |
sebum secreting cell | 2.15e-07 | 2 |
epithelial cell of sweat gland | 2.15e-07 | 2 |
epithelial cell of skin gland | 2.15e-07 | 2 |
acinar cell of sebaceous gland | 2.15e-07 | 2 |
amnion mesenchymal stem cell | 4.51e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
larynx | 5.95e-31 | 9 |
upper respiratory tract | 9.41e-21 | 19 |
extraembryonic membrane | 5.03e-15 | 14 |
membranous layer | 5.03e-15 | 14 |
segment of respiratory tract | 3.85e-13 | 47 |
respiratory primordium | 1.80e-12 | 38 |
endoderm of foregut | 1.80e-12 | 38 |
respiratory system | 5.37e-12 | 74 |
respiratory tract | 5.69e-11 | 54 |
foregut | 7.58e-11 | 87 |
endoderm-derived structure | 1.87e-10 | 160 |
endoderm | 1.87e-10 | 160 |
presumptive endoderm | 1.87e-10 | 160 |
placenta | 1.33e-08 | 4 |
allantois | 1.33e-08 | 4 |
chorion | 2.05e-08 | 7 |
amnion | 3.11e-08 | 7 |
extraembryonic structure | 3.65e-08 | 24 |
digestive system | 2.01e-07 | 145 |
digestive tract | 2.01e-07 | 145 |
primitive gut | 2.01e-07 | 145 |
skin gland | 2.15e-07 | 2 |
epidermis gland | 2.15e-07 | 2 |
gland of integumental system | 2.15e-07 | 2 |
sebaceous gland | 2.15e-07 | 2 |
skin sebaceous gland | 2.15e-07 | 2 |
sweat gland | 2.15e-07 | 2 |
sweat gland placode | 2.15e-07 | 2 |
sebaceous gland placode | 2.15e-07 | 2 |
somatic layer of lateral plate mesoderm | 3.36e-07 | 8 |
embryonic uterus | 9.41e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 8.08e-11 | 106 |
squamous cell carcinoma | 9.54e-08 | 14 |