FFCP PHASE1:Hg19::chr14:22925600..22925628,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=36bp_to_uc001wdz.3,uc010tms.1_5end | |association_with_transcript=36bp_to_uc001wdz.3,uc010tms.1_5end | ||
|cluster_id=chr14:22925600..22925628,+ | |||
|coexpression_cluster_id=C3411 | |||
|description=CAGE_peak_1_at_uc001wdz.3_5end,CAGE_peak_1_at_uc010tms.1_5end | |description=CAGE_peak_1_at_uc001wdz.3_5end,CAGE_peak_1_at_uc010tms.1_5end | ||
|id=chr14:22925600..22925628,+ | |id=chr14:22925600..22925628,+ | ||
|ontology_enrichment_celltype=CL:0000791!7.17e-13!18;CL:0000789!7.17e-13!18;CL:0002420!7.17e-13!18;CL:0002419!7.17e-13!18;CL:0000790!7.17e-13!18;CL:0000625!4.30e-09!11;CL:0000084!1.62e-08!25;CL:0000827!1.62e-08!25;CL:0000623!4.07e-08!3;CL:0000825!4.07e-08!3;CL:0000898!2.54e-07!3;CL:0000037!3.56e-07!172;CL:0000566!3.56e-07!172;CL:0000842!3.96e-07!3 | |ontology_enrichment_celltype=CL:0000791!7.17e-13!18;CL:0000789!7.17e-13!18;CL:0002420!7.17e-13!18;CL:0002419!7.17e-13!18;CL:0000790!7.17e-13!18;CL:0000625!4.30e-09!11;CL:0000084!1.62e-08!25;CL:0000827!1.62e-08!25;CL:0000623!4.07e-08!3;CL:0000825!4.07e-08!3;CL:0000898!2.54e-07!3;CL:0000037!3.56e-07!172;CL:0000566!3.56e-07!172;CL:0000842!3.96e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000623;3.60e-21;3!CL:0002127;1.90e-08;1!CL:0000911;1.90e-08;1!CL:0000814;1.90e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000623,2.57e-21,3;CL:0000825,2.57e-21,3;CL:0002127,1.91e-08,1;CL:0000914,1.91e-08,1;CL:0000911,1.91e-08,1;CL:0000814,1.91e-08,1;CL:0002042,1.91e-08,1;CL:0002039,1.91e-08,1;CL:0002040,1.91e-08,1;CL:0002041,1.91e-08,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1036!7.49e-09!8 | |ontology_enrichment_disease=DOID:1036!7.49e-09!8 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!2.36e-16!15;UBERON:0000179!2.36e-16!15;UBERON:0000463!2.36e-16!15;UBERON:0004177!2.23e-11!7;UBERON:0007023!1.19e-10!115;UBERON:0002370!5.32e-10!4;UBERON:0005058!5.32e-10!4;UBERON:0009113!5.32e-10!4;UBERON:0003295!5.32e-10!4;UBERON:0005562!5.32e-10!4 | |ontology_enrichment_uberon=UBERON:0000178!2.36e-16!15;UBERON:0000179!2.36e-16!15;UBERON:0000463!2.36e-16!15;UBERON:0004177!2.23e-11!7;UBERON:0007023!1.19e-10!115;UBERON:0002370!5.32e-10!4;UBERON:0005058!5.32e-10!4;UBERON:0009113!5.32e-10!4;UBERON:0003295!5.32e-10!4;UBERON:0005562!5.32e-10!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.99e-21;15!UBERON:0000179;2.99e-21;15!UBERON:0000463;2.99e-21;15!UBERON:0002370;1.42e-14;2!UBERON:0005058;1.42e-14;2!UBERON:0009113;1.42e-14;2!UBERON:0002390;2.51e-14;32!UBERON:0002193;3.58e-08;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.73e-21,15;UBERON:0000179,2.73e-21,15;UBERON:0000463,2.73e-21,15;UBERON:0002370,3.02e-16,4;UBERON:0005058,3.02e-16,4;UBERON:0009113,3.02e-16,4;UBERON:0003295,3.02e-16,4;UBERON:0005562,3.02e-16,4;UBERON:0003351,5.28e-11,6;UBERON:0004177,1.69e-09,7;UBERON:0005057,1.69e-09,7;UBERON:0002390,1.46e-07,98;UBERON:0003061,1.46e-07,98;UBERON:0000974,8.91e-07,10;UBERON:0003408,8.91e-07,10;UBERON:0001042,8.91e-07,10;UBERON:0009145,8.91e-07,10 | |||
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| ||
|short_description=p1@uc001wdz.3,p1@uc010tms.1 | |short_description=p1@uc001wdz.3,p1@uc010tms.1 | ||
}} | }} |
Latest revision as of 19:12, 24 July 2015
Short description: | p1@uc001wdz.3, p1@uc010tms.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_uc001wdz.3_5end, CAGE_peak_1_at_uc010tms.1_5end |
Coexpression cluster: | C3411_NK_anaplastic_acute_thymus_Natural_Whole_CD8 |
Association with transcript: | 36bp_to_uc001wdz.3, uc010tms.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
natural killer cell | 2.57e-21 | 3 |
pro-NK cell | 2.57e-21 | 3 |
innate effector T cell | 1.91e-08 | 1 |
immature NK T cell | 1.91e-08 | 1 |
effector T cell | 1.91e-08 | 1 |
mature NK T cell | 1.91e-08 | 1 |
immature NK T cell stage IV | 1.91e-08 | 1 |
immature NK T cell stage I | 1.91e-08 | 1 |
immature NK T cell stage II | 1.91e-08 | 1 |
immature NK T cell stage III | 1.91e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
blood | 2.73e-21 | 15 |
haemolymphatic fluid | 2.73e-21 | 15 |
organism substance | 2.73e-21 | 15 |
thymus | 3.02e-16 | 4 |
hemolymphoid system gland | 3.02e-16 | 4 |
thymic region | 3.02e-16 | 4 |
pharyngeal gland | 3.02e-16 | 4 |
thymus primordium | 3.02e-16 | 4 |
pharyngeal epithelium | 5.28e-11 | 6 |
hemopoietic organ | 1.69e-09 | 7 |
immune organ | 1.69e-09 | 7 |
hematopoietic system | 1.46e-07 | 98 |
blood island | 1.46e-07 | 98 |
neck | 8.91e-07 | 10 |
gland of gut | 8.91e-07 | 10 |
chordate pharynx | 8.91e-07 | 10 |
pharyngeal region of foregut | 8.91e-07 | 10 |