FFCP PHASE1:Hg19::chr20:42984073..42984085,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3172 | |EntrezGene=3172 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5024 | |HGNC=5024 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-254bp_to_ENST00000316673_5end | |association_with_transcript=-254bp_to_ENST00000316673_5end | ||
|cluster_id=chr20:42984073..42984085,+ | |||
|description=CAGE_peak_5_at_HNF4A_5end | |description=CAGE_peak_5_at_HNF4A_5end | ||
|id=chr20:42984073..42984085,+ | |id=chr20:42984073..42984085,+ | ||
|ontology_enrichment_celltype=CL:0002178!3.95e-08!3;CL:0000039!2.21e-07!7;CL:0000586!2.21e-07!7;CL:0000223!2.54e-07!59;CL:0000181!2.73e-07!12;CL:0000417!2.73e-07!12;CL:0000668!2.73e-07!12;CL:0000414!2.73e-07!12;CL:0000412!2.73e-07!12;CL:0000182!2.73e-07!12 | |ontology_enrichment_celltype=CL:0002178!3.95e-08!3;CL:0000039!2.21e-07!7;CL:0000586!2.21e-07!7;CL:0000223!2.54e-07!59;CL:0000181!2.73e-07!12;CL:0000417!2.73e-07!12;CL:0000668!2.73e-07!12;CL:0000414!2.73e-07!12;CL:0000412!2.73e-07!12;CL:0000182!2.73e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0000182;1.03e-15;12!CL:0002563;9.75e-13;4!CL:0000039;1.47e-07;7!CL:0000586;1.47e-07;7!CL:0002253;2.74e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.25e-15,12;CL:0000223,2.57e-15,58;CL:0002563,7.70e-13,4;CL:0000039,1.25e-07,7;CL:0000586,1.25e-07,7;CL:0002253,2.74e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0004161;4.12e-17;11!UBERON:0009497;1.59e-14;13!UBERON:0003104;2.51e-13;31!CL:0000223;5.60e-09;58 | |||
|ontology_enrichment_disease=DOID:305!5.59e-17!106;DOID:3119!2.52e-13!14;DOID:299!2.44e-12!25;DOID:4929!1.35e-11!2;DOID:0050687!2.19e-11!143;DOID:3493!3.12e-11!2;DOID:162!1.91e-07!235;DOID:14566!3.47e-07!239 | |ontology_enrichment_disease=DOID:305!5.59e-17!106;DOID:3119!2.52e-13!14;DOID:299!2.44e-12!25;DOID:4929!1.35e-11!2;DOID:0050687!2.19e-11!143;DOID:3493!3.12e-11!2;DOID:162!1.91e-07!235;DOID:14566!3.47e-07!239 | ||
|ontology_enrichment_disease_v019=DOID:3119;7.85e-14;14!DOID:299;7.72e-08;25!DOID:4929;2.35e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3119,7.23e-14,14;DOID:305,7.05e-12,106;DOID:0050687,2.02e-08,143;DOID:299,8.08e-08,25;DOID:4929,2.43e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0005409!6.22e-26!35;UBERON:0000160!7.05e-25!27;UBERON:0000059!4.01e-17!11;UBERON:0001155!1.07e-14!9;UBERON:0004921!1.11e-14!129;UBERON:0004185!1.11e-14!129;UBERON:0001007!1.05e-12!155;UBERON:0001555!1.05e-12!155;UBERON:0007026!1.05e-12!155;UBERON:0004119!3.05e-11!169;UBERON:0000925!3.05e-11!169;UBERON:0006595!3.05e-11!169;UBERON:0004907!2.28e-10!5;UBERON:0009854!3.15e-10!23;UBERON:0009497!2.63e-09!25;UBERON:0000015!2.63e-09!25;UBERON:0002423!2.63e-09!25;UBERON:0006235!2.63e-09!25;UBERON:0004161!2.63e-09!25;UBERON:0009856!6.09e-09!26;UBERON:0002108!1.59e-08!14;UBERON:0008835!5.31e-08!22;UBERON:0003894!5.31e-08!22;UBERON:0003929!6.08e-08!54;UBERON:0000466!5.26e-07!126;UBERON:0002294!5.69e-07!7;UBERON:0001173!5.69e-07!7;UBERON:0004912!5.69e-07!7;UBERON:0007499!5.73e-07!25;UBERON:0000077!7.12e-07!130 | |ontology_enrichment_uberon=UBERON:0005409!6.22e-26!35;UBERON:0000160!7.05e-25!27;UBERON:0000059!4.01e-17!11;UBERON:0001155!1.07e-14!9;UBERON:0004921!1.11e-14!129;UBERON:0004185!1.11e-14!129;UBERON:0001007!1.05e-12!155;UBERON:0001555!1.05e-12!155;UBERON:0007026!1.05e-12!155;UBERON:0004119!3.05e-11!169;UBERON:0000925!3.05e-11!169;UBERON:0006595!3.05e-11!169;UBERON:0004907!2.28e-10!5;UBERON:0009854!3.15e-10!23;UBERON:0009497!2.63e-09!25;UBERON:0000015!2.63e-09!25;UBERON:0002423!2.63e-09!25;UBERON:0006235!2.63e-09!25;UBERON:0004161!2.63e-09!25;UBERON:0009856!6.09e-09!26;UBERON:0002108!1.59e-08!14;UBERON:0008835!5.31e-08!22;UBERON:0003894!5.31e-08!22;UBERON:0003929!6.08e-08!54;UBERON:0000466!5.26e-07!126;UBERON:0002294!5.69e-07!7;UBERON:0001173!5.69e-07!7;UBERON:0004912!5.69e-07!7;UBERON:0007499!5.73e-07!25;UBERON:0000077!7.12e-07!130 | ||
|ontology_enrichment_uberon_v019=UBERON:0005409;3.24e-18;22!UBERON:0000160;2.03e-16;17!UBERON:0001052;5.55e-13;4!UBERON:0001242;9.75e-13;4!UBERON:0001262;9.75e-13;4!UBERON:0004786;9.75e-13;4!UBERON:0004808;9.75e-13;4!UBERON:0001277;9.75e-13;4!UBERON:0004907;1.43e-10;5!UBERON:0004921;1.51e-10;33!UBERON:0000059;1.86e-10;11!UBERON:0002107;5.09e-10;19!UBERON:0006925;5.09e-10;19!UBERON:0002423;1.16e-07;25!UBERON:0000485;1.17e-07;7!UBERON:0003929;1.17e-07;7!UBERON:0003350;8.35e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.81e-16,17;UBERON:0005409,4.04e-16,25;UBERON:0001052,5.39e-13,4;UBERON:0001242,7.70e-13,4;UBERON:0001262,7.70e-13,4;UBERON:0004786,7.70e-13,4;UBERON:0004808,7.70e-13,4;UBERON:0001277,7.70e-13,4;UBERON:0004907,1.40e-10,5;UBERON:0004921,1.68e-10,118;UBERON:0000059,1.83e-10,11;UBERON:0003929,5.41e-10,54;UBERON:0002107,5.73e-10,19;UBERON:0006925,5.73e-10,19;UBERON:0008836,5.73e-10,19;UBERON:0008835,1.23e-08,22;UBERON:0003894,1.23e-08,22;UBERON:0001007,2.79e-08,145;UBERON:0001555,2.79e-08,145;UBERON:0007026,2.79e-08,145;UBERON:0009854,2.85e-08,23;UBERON:0007499,1.26e-07,25;UBERON:0009497,1.26e-07,25;UBERON:0000015,1.26e-07,25;UBERON:0002423,1.26e-07,25;UBERON:0006235,1.26e-07,25;UBERON:0004161,1.26e-07,25;UBERON:0004119,2.29e-07,160;UBERON:0000925,2.29e-07,160;UBERON:0006595,2.29e-07,160;UBERON:0009856,2.45e-07,26;UBERON:0003350,7.44e-07,8;UBERON:0000473,8.85e-07,8 | |||
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|short_description=p5@HNF4A | |short_description=p5@HNF4A | ||
}} | }} |
Latest revision as of 07:53, 16 September 2015
Short description: | p5@HNF4A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_HNF4A_5end |
Coexpression cluster: | NA |
Association with transcript: | -254bp_to_ENST00000316673_5end |
EntrezGene: | HNF4A |
HGNC: | 5024 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.25e-15 | 12 |
endodermal cell | 2.57e-15 | 58 |
intestinal epithelial cell | 7.70e-13 | 4 |
germ line cell | 1.25e-07 | 7 |
germ cell | 1.25e-07 | 7 |
epithelial cell of large intestine | 2.74e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.81e-16 | 17 |
gastrointestinal system | 4.04e-16 | 25 |
rectum | 5.39e-13 | 4 |
intestinal mucosa | 7.70e-13 | 4 |
wall of intestine | 7.70e-13 | 4 |
gastrointestinal system mucosa | 7.70e-13 | 4 |
gastrointestinal system epithelium | 7.70e-13 | 4 |
intestinal epithelium | 7.70e-13 | 4 |
lower digestive tract | 1.40e-10 | 5 |
subdivision of digestive tract | 1.68e-10 | 118 |
large intestine | 1.83e-10 | 11 |
gut epithelium | 5.41e-10 | 54 |
liver | 5.73e-10 | 19 |
digestive gland | 5.73e-10 | 19 |
liver bud | 5.73e-10 | 19 |
hepatic diverticulum | 1.23e-08 | 22 |
liver primordium | 1.23e-08 | 22 |
digestive system | 2.79e-08 | 145 |
digestive tract | 2.79e-08 | 145 |
primitive gut | 2.79e-08 | 145 |
digestive tract diverticulum | 2.85e-08 | 23 |
epithelial sac | 1.26e-07 | 25 |
epithelium of foregut-midgut junction | 1.26e-07 | 25 |
anatomical boundary | 1.26e-07 | 25 |
hepatobiliary system | 1.26e-07 | 25 |
foregut-midgut junction | 1.26e-07 | 25 |
septum transversum | 1.26e-07 | 25 |
endoderm-derived structure | 2.29e-07 | 160 |
endoderm | 2.29e-07 | 160 |
presumptive endoderm | 2.29e-07 | 160 |
sac | 2.45e-07 | 26 |
epithelium of mucosa | 7.44e-07 | 8 |
testis | 8.85e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system cancer | 7.23e-14 | 14 |
carcinoma | 7.05e-12 | 106 |
cell type cancer | 2.02e-08 | 143 |
adenocarcinoma | 8.08e-08 | 25 |
tubular adenocarcinoma | 2.43e-07 | 2 |