FFCP PHASE1:Hg19::chr20:18125727..18125755,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57325 | |EntrezGene=57325 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15904 | |HGNC=15904 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000489634,NR_028402,uc002wqk.2_5end | |association_with_transcript=0bp_to_ENST00000489634,NR_028402,uc002wqk.2_5end | ||
|cluster_id=chr20:18125727..18125755,+ | |||
|coexpression_cluster_id=C1004 | |||
|description=CAGE_peak_4_at_CSRP2BP_5end | |description=CAGE_peak_4_at_CSRP2BP_5end | ||
|id=chr20:18125727..18125755,+ | |id=chr20:18125727..18125755,+ | ||
|ontology_enrichment_celltype=CL:0000066!8.03e-14!254;CL:0000039!6.55e-13!7;CL:0000586!6.55e-13!7;CL:0000223!5.00e-12!59;CL:0002541!6.16e-12!3;CL:0000349!2.97e-11!3;CL:0002577!2.97e-11!3;CL:0002536!5.40e-08!2;CL:1000415!1.60e-07!2;CL:0002076!4.81e-07!43;CL:0002537!6.75e-07!5 | |ontology_enrichment_celltype=CL:0000066!8.03e-14!254;CL:0000039!6.55e-13!7;CL:0000586!6.55e-13!7;CL:0000223!5.00e-12!59;CL:0002541!6.16e-12!3;CL:0000349!2.97e-11!3;CL:0002577!2.97e-11!3;CL:0002536!5.40e-08!2;CL:1000415!1.60e-07!2;CL:0002076!4.81e-07!43;CL:0002537!6.75e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0000349;3.36e-37;19!CL:0000039;1.19e-26;7!CL:0000586;1.19e-26;7!CL:0002541;8.49e-24;3!CL:0002536;2.79e-15;2!CL:0002537;1.18e-13;5!CL:0002577;6.44e-11;3!CL:0002563;1.32e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,3.11e-37,19;CL:0000039,1.13e-26,7;CL:0000586,1.13e-26,7;CL:0002541,8.49e-24,3;CL:0002536,2.41e-15,2;CL:0002537,1.21e-13,5;CL:0002577,6.29e-11,3;CL:0002563,1.32e-08,4 | |||
|ontology_enrichment_development_v019=UBERON:0000358;7.46e-09;1!UBERON:0003124;1.01e-08;1 | |||
|ontology_enrichment_disease=DOID:305!1.29e-15!106;DOID:0050687!2.86e-13!143;DOID:1749!2.91e-13!14 | |ontology_enrichment_disease=DOID:305!1.29e-15!106;DOID:0050687!2.86e-13!143;DOID:1749!2.91e-13!14 | ||
|ontology_enrichment_disease_v019=DOID:1799;3.31e-09;1!DOID:10165;3.31e-09;1!DOID:1798;3.31e-09;1!DOID:178;8.36e-09;1!DOID:326;8.36e-09;1!DOID:3978;8.36e-09;1!DOID:3394;8.36e-09;1!DOID:5844;8.36e-09;1!DOID:3095;2.25e-08;22!DOID:2994;2.25e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,3.31e-09,1;DOID:10165,3.31e-09,1;DOID:1798,3.31e-09,1;DOID:178,8.36e-09,1;DOID:326,8.36e-09,1;DOID:3978,8.36e-09,1;DOID:3394,8.36e-09,1;DOID:5844,8.36e-09,1;DOID:3095,2.22e-08,22;DOID:2994,2.22e-08,22 | |||
|ontology_enrichment_uberon=UBERON:0005631!2.53e-34!14;UBERON:0000158!2.53e-34!14;UBERON:0003124!1.11e-24!7;UBERON:0000478!2.96e-22!24;UBERON:0004923!4.51e-17!57;UBERON:0001987!1.70e-14!4;UBERON:0004340!1.70e-14!4;UBERON:0000305!1.99e-12!7;UBERON:0000476!6.16e-12!3;UBERON:0000920!6.16e-12!3;UBERON:0004871!7.90e-11!8;UBERON:0003729!2.53e-10!5;UBERON:0000344!1.87e-09!12;UBERON:0005156!3.70e-09!59;UBERON:0000990!3.70e-09!59;UBERON:0000995!6.02e-09!21;UBERON:0005795!1.76e-08!22;UBERON:0003975!1.76e-08!22;UBERON:0003100!1.42e-07!41;UBERON:0003343!1.71e-07!4;UBERON:0004785!1.71e-07!4;UBERON:0003133!1.84e-07!48;UBERON:0004175!2.64e-07!25;UBERON:0003134!4.70e-07!37;UBERON:0000474!4.70e-07!37 | |ontology_enrichment_uberon=UBERON:0005631!2.53e-34!14;UBERON:0000158!2.53e-34!14;UBERON:0003124!1.11e-24!7;UBERON:0000478!2.96e-22!24;UBERON:0004923!4.51e-17!57;UBERON:0001987!1.70e-14!4;UBERON:0004340!1.70e-14!4;UBERON:0000305!1.99e-12!7;UBERON:0000476!6.16e-12!3;UBERON:0000920!6.16e-12!3;UBERON:0004871!7.90e-11!8;UBERON:0003729!2.53e-10!5;UBERON:0000344!1.87e-09!12;UBERON:0005156!3.70e-09!59;UBERON:0000990!3.70e-09!59;UBERON:0000995!6.02e-09!21;UBERON:0005795!1.76e-08!22;UBERON:0003975!1.76e-08!22;UBERON:0003100!1.42e-07!41;UBERON:0003343!1.71e-07!4;UBERON:0004785!1.71e-07!4;UBERON:0003133!1.84e-07!48;UBERON:0004175!2.64e-07!25;UBERON:0003134!4.70e-07!37;UBERON:0000474!4.70e-07!37 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;4.42e-46;10!UBERON:0000158;4.42e-46;10!UBERON:0000478;4.07e-42;24!UBERON:0000305;1.38e-25;7!UBERON:0003124;8.49e-24;3!UBERON:0000920;8.49e-24;3!UBERON:0001987;2.57e-17;4!UBERON:0001242;1.32e-08;4!UBERON:0001262;1.32e-08;4!UBERON:0004786;1.32e-08;4!UBERON:0004808;1.32e-08;4!UBERON:0001277;1.32e-08;4!UBERON:0001052;1.81e-08;4!UBERON:0004923;4.24e-07;55!UBERON:0004907;6.17e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,8.28e-62,14;UBERON:0000158,8.28e-62,14;UBERON:0000478,3.79e-42,24;UBERON:0003124,1.98e-38,7;UBERON:0000305,1.28e-25,7;UBERON:0000920,8.49e-24,3;UBERON:0004871,2.06e-22,8;UBERON:0001987,2.43e-17,4;UBERON:0004340,2.43e-17,4;UBERON:0004923,1.27e-16,66;UBERON:0001242,1.32e-08,4;UBERON:0001262,1.32e-08,4;UBERON:0004786,1.32e-08,4;UBERON:0004808,1.32e-08,4;UBERON:0001277,1.32e-08,4;UBERON:0001052,1.85e-08,4;UBERON:0004907,6.27e-07,5 | |||
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| ||
|short_description=p4@CSRP2BP | |short_description=p4@CSRP2BP | ||
}} | }} |
Latest revision as of 07:09, 20 September 2015
Short description: | p4@CSRP2BP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CSRP2BP_5end |
Coexpression cluster: | C1004_chorionic_pancreatic_choriocarcinoma_amniotic_placenta_colon_Placental |
Association with transcript: | 0bp_to_ENST00000489634, NR_028402, uc002wqk.2_5end |
EntrezGene: | CSRP2BP |
HGNC: | 15904 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 3.11e-37 | 19 |
germ line cell | 1.13e-26 | 7 |
germ cell | 1.13e-26 | 7 |
chorionic membrane mesenchymal stem cell | 8.49e-24 | 3 |
amniotic epithelial cell | 2.41e-15 | 2 |
amnion mesenchymal stem cell | 1.21e-13 | 5 |
placental epithelial cell | 6.29e-11 | 3 |
intestinal epithelial cell | 1.32e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 8.28e-62 | 14 |
membranous layer | 8.28e-62 | 14 |
extraembryonic structure | 3.79e-42 | 24 |
chorion | 1.98e-38 | 7 |
amnion | 1.28e-25 | 7 |
egg chorion | 8.49e-24 | 3 |
somatic layer of lateral plate mesoderm | 2.06e-22 | 8 |
placenta | 2.43e-17 | 4 |
allantois | 2.43e-17 | 4 |
organ component layer | 1.27e-16 | 66 |
intestinal mucosa | 1.32e-08 | 4 |
wall of intestine | 1.32e-08 | 4 |
gastrointestinal system mucosa | 1.32e-08 | 4 |
gastrointestinal system epithelium | 1.32e-08 | 4 |
intestinal epithelium | 1.32e-08 | 4 |
rectum | 1.85e-08 | 4 |
lower digestive tract | 6.27e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 3.31e-09 | 1 |
endocrine pancreas cancer | 3.31e-09 | 1 |
pancreatic endocrine carcinoma | 3.31e-09 | 1 |
vascular disease | 8.36e-09 | 1 |
ischemia | 8.36e-09 | 1 |
extrinsic cardiomyopathy | 8.36e-09 | 1 |
myocardial ischemia | 8.36e-09 | 1 |
myocardial infarction | 8.36e-09 | 1 |
germ cell and embryonal cancer | 2.22e-08 | 22 |
germ cell cancer | 2.22e-08 | 22 |