FFCP PHASE1:Hg19::chrX:152767880..152767932,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=633 | |EntrezGene=633 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1044 | |HGNC=1044 | ||
|TSSclassifier=strong | |||
|UniProt=A6NLG9 | |UniProt=A6NLG9 | ||
|association_with_transcript=0bp_to_ENST00000370204,ENST00000430380_5end | |association_with_transcript=0bp_to_ENST00000370204,ENST00000430380_5end | ||
|cluster_id=chrX:152767880..152767932,+ | |||
|description=CAGE_peak_18_at_BGN_5end | |description=CAGE_peak_18_at_BGN_5end | ||
|id=chrX:152767880..152767932,+ | |id=chrX:152767880..152767932,+ | ||
|ontology_enrichment_celltype=CL:0000327!1.93e-07!14 | |ontology_enrichment_celltype=CL:0000327!1.93e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0000138;8.03e-13;6!CL:0000669;8.41e-12;4!CL:0000153;1.22e-11;9!CL:0000447;1.22e-11;9!CL:0000327;2.59e-11;15!CL:0000499;3.47e-10;28!CL:0002564;1.99e-09;3!CL:0002602;4.91e-07;2!CL:0002575;5.84e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000058,7.68e-13,6;CL:0000138,7.68e-13,6;CL:0000669,9.16e-12,4;CL:0000153,1.16e-11,9;CL:0000447,1.16e-11,9;CL:0000327,2.22e-11,15;CL:0000499,3.20e-10,28;CL:0002564,2.27e-09,3;CL:0002602,5.14e-07,2;CL:0002575,5.60e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0005062;5.94e-07;4!UBERON:0007284;5.94e-07;4 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!9.47e-18!115;UBERON:0000477!1.39e-12!286;UBERON:0000955!6.01e-12!69;UBERON:0006238!6.01e-12!69;UBERON:0004111!1.95e-11!241;UBERON:0002616!2.59e-11!59;UBERON:0000025!2.95e-11!194;UBERON:0001049!2.95e-10!57;UBERON:0005068!2.95e-10!57;UBERON:0006241!2.95e-10!57;UBERON:0007135!2.95e-10!57;UBERON:0001017!8.95e-10!82;UBERON:0000153!1.24e-09!129;UBERON:0007811!1.24e-09!129;UBERON:0000033!4.28e-09!123;UBERON:0005743!8.10e-09!86;UBERON:0004121!2.77e-08!169;UBERON:0003080!2.89e-08!42;UBERON:0000073!3.74e-08!94;UBERON:0001016!3.74e-08!94;UBERON:0003075!8.20e-08!86;UBERON:0007284!8.20e-08!86;UBERON:0000924!9.80e-08!173;UBERON:0006601!9.80e-08!173;UBERON:0002780!9.95e-08!41;UBERON:0001890!9.95e-08!41;UBERON:0006240!9.95e-08!41;UBERON:0000119!3.61e-07!312;UBERON:0002346!4.98e-07!90;UBERON:0000481!5.08e-07!347;UBERON:0000483!8.24e-07!309 | |ontology_enrichment_uberon=UBERON:0007023!9.47e-18!115;UBERON:0000477!1.39e-12!286;UBERON:0000955!6.01e-12!69;UBERON:0006238!6.01e-12!69;UBERON:0004111!1.95e-11!241;UBERON:0002616!2.59e-11!59;UBERON:0000025!2.95e-11!194;UBERON:0001049!2.95e-10!57;UBERON:0005068!2.95e-10!57;UBERON:0006241!2.95e-10!57;UBERON:0007135!2.95e-10!57;UBERON:0001017!8.95e-10!82;UBERON:0000153!1.24e-09!129;UBERON:0007811!1.24e-09!129;UBERON:0000033!4.28e-09!123;UBERON:0005743!8.10e-09!86;UBERON:0004121!2.77e-08!169;UBERON:0003080!2.89e-08!42;UBERON:0000073!3.74e-08!94;UBERON:0001016!3.74e-08!94;UBERON:0003075!8.20e-08!86;UBERON:0007284!8.20e-08!86;UBERON:0000924!9.80e-08!173;UBERON:0006601!9.80e-08!173;UBERON:0002780!9.95e-08!41;UBERON:0001890!9.95e-08!41;UBERON:0006240!9.95e-08!41;UBERON:0000119!3.61e-07!312;UBERON:0002346!4.98e-07!90;UBERON:0000481!5.08e-07!347;UBERON:0000483!8.24e-07!309 | ||
|ontology_enrichment_uberon_v019=UBERON:0011135;8.84e-15;5!UBERON:0002216;8.84e-15;5!UBERON:0011134;8.84e-15;5!UBERON:0002209;8.84e-15;5!UBERON:0002213;8.84e-15;5!UBERON:0007844;8.84e-15;5!UBERON:0011138;8.84e-15;5!UBERON:0001130;8.84e-15;5!UBERON:0001066;8.84e-15;5!UBERON:0001468;8.84e-15;5!UBERON:0004905;1.08e-12;8!UBERON:0000982;1.08e-12;8!UBERON:0004770;1.08e-12;8!UBERON:0002242;1.99e-09;3!UBERON:0003978;3.68e-09;3!UBERON:0000946;3.68e-09;3!UBERON:0006444;4.91e-07;2!UBERON:0001995;4.91e-07;2!UBERON:0004715;4.91e-07;2!UBERON:0003127;7.55e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011135,1.05e-14,5;UBERON:0002216,1.05e-14,5;UBERON:0011134,1.05e-14,5;UBERON:0002209,1.05e-14,5;UBERON:0002213,1.05e-14,5;UBERON:0005856,1.05e-14,5;UBERON:0005866,1.05e-14,5;UBERON:0005863,1.05e-14,5;UBERON:0007844,1.05e-14,5;UBERON:0011138,1.05e-14,5;UBERON:0001130,1.05e-14,5;UBERON:0001066,1.05e-14,5;UBERON:0001468,1.05e-14,5;UBERON:0004905,1.20e-12,8;UBERON:0000982,1.20e-12,8;UBERON:0004770,1.20e-12,8;UBERON:0002242,2.27e-09,3;UBERON:0003068,2.27e-09,3;UBERON:0002328,2.27e-09,3;UBERON:0004880,2.27e-09,3;UBERON:0003978,3.25e-09,3;UBERON:0009751,3.25e-09,3;UBERON:0000946,3.25e-09,3;UBERON:0002523,3.25e-09,3;UBERON:0005983,3.25e-09,3;UBERON:0002165,3.25e-09,3;UBERON:0002062,3.25e-09,3;UBERON:0007280,3.25e-09,3;UBERON:0006444,5.14e-07,2;UBERON:0001995,5.14e-07,2;UBERON:0004715,5.14e-07,2;UBERON:0003127,6.85e-07,2;UBERON:0002133,9.10e-07,2 | |||
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| ||
|short_description=p18@BGN | |short_description=p18@BGN | ||
}} | }} |
Latest revision as of 23:41, 19 September 2015
Short description: | p18@BGN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_18_at_BGN_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000370204, ENST00000430380_5end |
EntrezGene: | BGN |
HGNC: | 1044 |
UniProt: | A6NLG9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chondroblast | 7.68e-13 | 6 |
chondrocyte | 7.68e-13 | 6 |
pericyte cell | 9.16e-12 | 4 |
GAG secreting cell | 1.16e-11 | 9 |
carbohydrate secreting cell | 1.16e-11 | 9 |
extracellular matrix secreting cell | 2.22e-11 | 15 |
stromal cell | 3.20e-10 | 28 |
nucleus pulposus cell of intervertebral disc | 2.27e-09 | 3 |
annulus pulposus cell | 5.14e-07 | 2 |
central nervous system pericyte | 5.60e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
intervertebral cartilage | 1.05e-14 | 5 |
symphysis | 1.05e-14 | 5 |
nonsynovial joint | 1.05e-14 | 5 |
fibrous joint | 1.05e-14 | 5 |
cartilaginous joint | 1.05e-14 | 5 |
developing mesenchymal condensation | 1.05e-14 | 5 |
pre-cartilage condensation | 1.05e-14 | 5 |
cartilaginous condensation | 1.05e-14 | 5 |
cartilage element | 1.05e-14 | 5 |
post-cranial axial skeletal system | 1.05e-14 | 5 |
vertebral column | 1.05e-14 | 5 |
intervertebral disk | 1.05e-14 | 5 |
intervertebral joint | 1.05e-14 | 5 |
articulation | 1.20e-12 | 8 |
skeletal joint | 1.20e-12 | 8 |
articular system | 1.20e-12 | 8 |
nucleus pulposus | 2.27e-09 | 3 |
axial mesoderm | 2.27e-09 | 3 |
notochord | 2.27e-09 | 3 |
chordamesoderm | 2.27e-09 | 3 |
valve | 3.25e-09 | 3 |
cardiac mesenchyme | 3.25e-09 | 3 |
cardial valve | 3.25e-09 | 3 |
tunica intima | 3.25e-09 | 3 |
heart layer | 3.25e-09 | 3 |
endocardium | 3.25e-09 | 3 |
endocardial cushion | 3.25e-09 | 3 |
presumptive endocardium | 3.25e-09 | 3 |
annulus fibrosus | 5.14e-07 | 2 |
fibrocartilage | 5.14e-07 | 2 |
annulus fibrosus disci intervertebralis | 5.14e-07 | 2 |
open tracheal system trachea | 6.85e-07 | 2 |
atrioventricular valve | 9.10e-07 | 2 |