FFCP PHASE1:Hg19::chr16:29275902..29275939,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr16:29275902..29275939,-
|short_description=p@chr16:29275902..29275939,-
|description=CAGE_peak_at_chr16:29275902..29275939,-
|association_with_transcript=NA
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr16:29275902..29275939,- | |||
|coexpression_cluster_id=C19 | |||
|description=CAGE_peak_at_chr16:29275902..29275939,- | |||
|id=chr16:29275902..29275939,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002379;3.25e-09;1!CL:0000083;3.46e-09;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000083,3.68e-09,4;CL:0002379,5.28e-09,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!1.07e-13!143;DOID:305!8.28e-13!106;DOID:1749!2.10e-11!14;DOID:162!2.43e-10!235;DOID:14566!8.00e-10!239;DOID:1324!5.39e-08!15;DOID:0050615!2.23e-07!16 | |||
|ontology_enrichment_disease_v019=DOID:4074;1.83e-17;2!DOID:4905;1.83e-17;2!DOID:3498;1.83e-17;2!DOID:3111;1.16e-09;1!DOID:3603;1.16e-09;1!DOID:4960;3.25e-09;1!DOID:3620;3.25e-09;1!DOID:0070004;3.25e-09;1!DOID:3565;3.25e-09;1!DOID:1793;3.46e-09;4 | |||
|ontology_enrichment_disease_v019_2=DOID:4074,2.07e-17,2;DOID:4905,2.07e-17,2;DOID:3498,2.07e-17,2;DOID:3111,1.03e-09,1;DOID:3603,1.03e-09,1;DOID:4960,2.55e-09,1;DOID:0070004,2.55e-09,1;DOID:1793,3.68e-09,4;DOID:3620,5.28e-09,1;DOID:3565,5.28e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0001869!7.57e-16!32;UBERON:0001893!1.29e-14!34;UBERON:0002780!4.20e-14!41;UBERON:0001890!4.20e-14!41;UBERON:0006240!4.20e-14!41;UBERON:0003080!1.25e-13!42;UBERON:0002791!1.72e-13!33;UBERON:0002020!5.89e-13!34;UBERON:0003528!5.89e-13!34;UBERON:0002619!1.05e-10!22;UBERON:0002420!1.45e-10!9;UBERON:0007245!1.45e-10!9;UBERON:0010009!1.45e-10!9;UBERON:0010011!1.45e-10!9;UBERON:0000454!1.45e-10!9;UBERON:0001950!5.21e-10!20;UBERON:0000955!6.16e-10!69;UBERON:0006238!6.16e-10!69;UBERON:0002616!6.82e-10!59;UBERON:0001049!1.82e-09!57;UBERON:0005068!1.82e-09!57;UBERON:0006241!1.82e-09!57;UBERON:0007135!1.82e-09!57;UBERON:0003056!1.87e-09!61;UBERON:0001264!2.61e-09!10;UBERON:0003922!2.61e-09!10;UBERON:0003923!2.61e-09!10;UBERON:0003924!2.61e-09!10;UBERON:0003921!2.61e-09!10;UBERON:0000956!4.43e-09!25;UBERON:0000203!4.43e-09!25;UBERON:0002114!9.36e-09!12;UBERON:0000369!1.07e-08!4;UBERON:0002435!1.07e-08!4;UBERON:0000204!1.07e-08!4;UBERON:0010082!1.07e-08!4;UBERON:0001045!2.49e-08!11;UBERON:0001871!2.98e-08!7;UBERON:0005743!3.44e-08!86;UBERON:0001017!4.17e-08!82;UBERON:0003075!1.13e-07!86;UBERON:0007284!1.13e-07!86;UBERON:0000200!1.78e-07!6;UBERON:0002075!1.78e-07!18;UBERON:0002108!2.37e-07!14;UBERON:0009663!3.30e-07!7;UBERON:0002346!4.80e-07!90;UBERON:0000349!4.85e-07!5;UBERON:0005383!5.88e-07!3;UBERON:0005382!5.88e-07!3;UBERON:0000073!8.50e-07!94;UBERON:0001016!8.50e-07!94 | |||
|ontology_enrichment_uberon_v019=UBERON:0000349;1.34e-25;5!UBERON:0002420;4.18e-22;9!UBERON:0007245;4.18e-22;9!UBERON:0010009;4.18e-22;9!UBERON:0010011;4.18e-22;9!UBERON:0000454;4.18e-22;9!UBERON:0001264;4.19e-20;10!UBERON:0000369;1.31e-18;4!UBERON:0002435;1.31e-18;4!UBERON:0000204;1.31e-18;4!UBERON:0001876;5.07e-17;2!UBERON:0005383;9.56e-12;3!UBERON:0005382;9.56e-12;3!UBERON:0002075;4.12e-11;18!UBERON:0009663;7.07e-11;7!UBERON:0001882;3.25e-09;1!UBERON:0001874;3.25e-09;1!UBERON:0005403;3.25e-09;1!UBERON:0000125;1.43e-08;9!UBERON:0002308;1.43e-08;9!UBERON:0002791;2.19e-08;32!UBERON:0001869;7.25e-08;32!UBERON:0003528;1.94e-07;34!UBERON:0002020;1.94e-07;34!UBERON:0001893;8.19e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000349,7.55e-26,5;UBERON:0002420,3.59e-22,9;UBERON:0007245,3.59e-22,9;UBERON:0010009,3.59e-22,9;UBERON:0010011,3.59e-22,9;UBERON:0000454,3.59e-22,9;UBERON:0001264,3.88e-20,10;UBERON:0000369,1.72e-18,4;UBERON:0002435,1.72e-18,4;UBERON:0000204,1.72e-18,4;UBERON:0010082,1.72e-18,4;UBERON:0001876,2.65e-17,2;UBERON:0005383,9.83e-12,3;UBERON:0005382,9.83e-12,3;UBERON:0002075,3.95e-11,18;UBERON:0009663,8.24e-11,7;UBERON:0001874,3.00e-09,1;UBERON:0001882,4.50e-09,1;UBERON:0005403,4.50e-09,1;UBERON:0000125,1.61e-08,9;UBERON:0002308,1.61e-08,9;UBERON:0002791,2.70e-08,32;UBERON:0001869,2.70e-08,32;UBERON:0003528,8.59e-08,34;UBERON:0002020,8.59e-08,34;UBERON:0001893,8.59e-08,34 | |||
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| ||
|short_description=p@chr16:29275902..29275939,- | |||
}} | }} |
Latest revision as of 07:49, 25 July 2015
Short description: | p@chr16:29275902..29275939, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:29275902..29275939, - |
Coexpression cluster: | C19_embryonic_testis_cord_chronic_CD14_NK_mesothelioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of pancreas | 3.68e-09 | 4 |
meningothelial cell | 5.28e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
limbic system | 7.55e-26 | 5 |
basal ganglion | 3.59e-22 | 9 |
nuclear complex of neuraxis | 3.59e-22 | 9 |
aggregate regional part of brain | 3.59e-22 | 9 |
collection of basal ganglia | 3.59e-22 | 9 |
cerebral subcortex | 3.59e-22 | 9 |
pancreas | 3.88e-20 | 10 |
corpus striatum | 1.72e-18 | 4 |
striatum | 1.72e-18 | 4 |
ventral part of telencephalon | 1.72e-18 | 4 |
future corpus striatum | 1.72e-18 | 4 |
amygdala | 2.65e-17 | 2 |
caudate-putamen | 9.83e-12 | 3 |
dorsal striatum | 9.83e-12 | 3 |
viscus | 3.95e-11 | 18 |
telencephalic nucleus | 8.24e-11 | 7 |
putamen | 3.00e-09 | 1 |
nucleus accumbens | 4.50e-09 | 1 |
ventral striatum | 4.50e-09 | 1 |
neural nucleus | 1.61e-08 | 9 |
nucleus of brain | 1.61e-08 | 9 |
regional part of telencephalon | 2.70e-08 | 32 |
cerebral hemisphere | 2.70e-08 | 32 |
brain grey matter | 8.59e-08 | 34 |
gray matter | 8.59e-08 | 34 |
telencephalon | 8.59e-08 | 34 |
Ontology term | p-value | n |
---|---|---|
pancreas adenocarcinoma | 2.07e-17 | 2 |
pancreatic carcinoma | 2.07e-17 | 2 |
pancreatic ductal adenocarcinoma | 2.07e-17 | 2 |
cystadenocarcinoma | 1.03e-09 | 1 |
mucinous cystadenocarcinoma | 1.03e-09 | 1 |
bone marrow cancer | 2.55e-09 | 1 |
myeloma | 2.55e-09 | 1 |
pancreatic cancer | 3.68e-09 | 4 |
central nervous system cancer | 5.28e-09 | 1 |
meningioma | 5.28e-09 | 1 |