FFCP PHASE1:Hg19::chr5:133451694..133451705,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:133451694..133451705,- | |||
|coexpression_cluster_id=C1952 | |||
|description=CAGE_peak_at_chr5:133451694..133451705,- | |description=CAGE_peak_at_chr5:133451694..133451705,- | ||
|id=chr5:133451694..133451705,- | |id=chr5:133451694..133451705,- | ||
|ontology_enrichment_celltype=CL:0000084!1.24e-10!25;CL:0000827!1.24e-10!25;CL:0000542!6.90e-10!53;CL:0000051!6.90e-10!53;CL:0000838!3.56e-09!52;CL:0000791!5.28e-08!18;CL:0000789!5.28e-08!18;CL:0002420!5.28e-08!18;CL:0002419!5.28e-08!18;CL:0000790!5.28e-08!18;CL:0000625!5.91e-07!11 | |ontology_enrichment_celltype=CL:0000084!1.24e-10!25;CL:0000827!1.24e-10!25;CL:0000542!6.90e-10!53;CL:0000051!6.90e-10!53;CL:0000838!3.56e-09!52;CL:0000791!5.28e-08!18;CL:0000789!5.28e-08!18;CL:0002420!5.28e-08!18;CL:0002419!5.28e-08!18;CL:0000790!5.28e-08!18;CL:0000625!5.91e-07!11 | ||
|ontology_enrichment_celltype_v019=CL:0000084;1.26e-16;25!CL:0000624;6.34e-12;6!CL:0000791;6.68e-09;18!CL:0000789;6.68e-09;18!CL:0002419;6.68e-09;18!CL:0000542;3.10e-07;53!CL:0000623;8.86e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,1.33e-16,25;CL:0000827,1.33e-16,25;CL:0000624,6.34e-12,6;CL:0000838,3.02e-11,52;CL:0000542,4.97e-11,53;CL:0000051,4.97e-11,53;CL:0000791,6.51e-09,18;CL:0000789,6.51e-09,18;CL:0002420,6.51e-09,18;CL:0002419,6.51e-09,18;CL:0000790,6.51e-09,18 | |||
|ontology_enrichment_development_v019=CL:0000790;6.68e-09;18!CL:0000051;3.10e-07;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;3.33e-34;2!UBERON:0005058;3.33e-34;2!UBERON:0009113;3.33e-34;2!UBERON:0000029;9.48e-18;1!UBERON:0004177;2.49e-14;5!UBERON:0005057;2.49e-14;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000029,5.26e-18,1;UBERON:0002370,9.51e-18,4;UBERON:0005058,9.51e-18,4;UBERON:0009113,9.51e-18,4;UBERON:0003295,9.51e-18,4;UBERON:0005562,9.51e-18,4;UBERON:0003351,3.64e-12,6;UBERON:0004177,1.46e-10,7;UBERON:0005057,1.46e-10,7;UBERON:0000974,1.16e-07,10;UBERON:0003408,1.16e-07,10;UBERON:0001042,1.16e-07,10;UBERON:0009145,1.16e-07,10;UBERON:0006562,4.85e-07,11;UBERON:0009722,4.85e-07,11;UBERON:0007690,4.85e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.247532705920093,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0.382067028739756,0.492603536699674,0,0,0,0,0,0,0,0,0,0,0,0.401088894940283,0.651032612147555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,1.37696839079683,0,1.43921049299656,0,0.32592226663359,0,0,0.111410456885174,0,0.221533894583621,0,0,0,0.328875809207352,0.276350017785848,0,0.296573126324121,0,2.09071047609954,0,0,0.68725489096526,1.01207876807801,0,0.651083453856419,0,0.150575119077773,0.255973222308837,0,0.236777252044017,0,0.403213486449465,0.802320587350522,2.17236605824198,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0.312160076830321,0,0.149448680551801,0.117434498643765,0.161872944368132,0.140450806702248,0,0,0,0,0,0,0,0.168336113954066,0,0,0.877955241761676,0.30648779579902,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.882926198829301,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0,0.394061520403854,0.646882724578552,1.02674429023799,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0.178428988797162,0,0,0,0,0,0.664225598535437,0,0,0,0,0.206768026122887,0.431428401637234,0.640365346820666,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0.164254312027618,0,0.116210378459959,0.120859449591622,0.200506470303285,0,0,0,0,0,0,0,1.46139224653261,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0,0.183138929636687,0.082509499920588,0,0,0,0,0,0,0,0,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0,0,0.648473311192717,0.540031437238115,0.79312517629427,0,0,0,0.185803175125719,0,1.06712765022621,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242721043499027,0,0.568272293612826,0,0.296964680832639,0,0,0.140669416410513,0,0,0.422250816255987,0.19924798825107,0.552567831062295,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0.173624994933292,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04386596391473,0,0,0.225595660617181,0.19606253431774,0.167821586975843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0,0,0,0,0,0,0,0,0,0,0.19871461170299,0,0.195551382734803,0,0,0,0,0.114536596165916,0,0,0,0,0,0.313808538937,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0.472699093843342,0.247247575143499,0.26961417541674,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.0524545881349981,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0,0,0,0,0,0,1.9846640872478,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0.0620964029413835,0,0.249960815924213,0,0,0,0,0,0.149254802886874,0,0,0.189403005275089,0,0,0,0.302461847526478,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397832444232549,0.0752103283492573,0,0.781514011233092,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0.222462803784138,0,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0.196300467230486,0,0,0,0,0,0,0,0.118920090777569,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0.315543124386369,0,0,0,0,0,0,0.252332849670158,0.109265571963696,0,0,0,0,0,0,0,0,0,0,0.476128862927481,4.90875714753646,1.80016671457988,0,0,0,0,0,0.134704106029175,0.0717222053926763,0,0,0,0,0.0898252021065869,0,0,0,0,0.603821380773079,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.247532705920093,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0.382067028739756,0.492603536699674,0,0,0,0,0,0,0,0,0,0,0,0.401088894940283,0.651032612147555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,1.37696839079683,0,1.43921049299656,0,0.32592226663359,0,0,0.111410456885174,0,0.221533894583621,0,0,0,0.328875809207352,0.276350017785848,0,0.296573126324121,0,2.09071047609954,0,0,0.68725489096526,1.01207876807801,0,0.651083453856419,0,0.150575119077773,0.255973222308837,0,0.236777252044017,0,0.403213486449465,0.802320587350522,2.17236605824198,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0.312160076830321,0,0.149448680551801,0.117434498643765,0.161872944368132,0.140450806702248,0,0,0,0,0,0,0,0.168336113954066,0,0,0.877955241761676,0.30648779579902,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.882926198829301,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0,0.394061520403854,0.646882724578552,1.02674429023799,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0.178428988797162,0,0,0,0,0,0.664225598535437,0,0,0,0,0.206768026122887,0.431428401637234,0.640365346820666,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0.164254312027618,0,0.116210378459959,0.120859449591622,0.200506470303285,0,0,0,0,0,0,0,1.46139224653261,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0,0.183138929636687,0.082509499920588,0,0,0,0,0,0,0,0,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0,0,0.648473311192717,0.540031437238115,0.79312517629427,0,0,0,0.185803175125719,0,1.06712765022621,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242721043499027,0,0.568272293612826,0,0.296964680832639,0,0,0.140669416410513,0,0,0.422250816255987,0.19924798825107,0.552567831062295,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0.173624994933292,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04386596391473,0,0,0.225595660617181,0.19606253431774,0.167821586975843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0,0,0,0,0,0,0,0,0,0,0.19871461170299,0,0.195551382734803,0,0,0,0,0.114536596165916,0,0,0,0,0,0.313808538937,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0.472699093843342,0.247247575143499,0.26961417541674,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.0524545881349981,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0,0,0,0,0,0,1.9846640872478,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0.0620964029413835,0,0.249960815924213,0,0,0,0,0,0.149254802886874,0,0,0.189403005275089,0,0,0,0.302461847526478,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397832444232549,0.0752103283492573,0,0.781514011233092,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0.222462803784138,0,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0.196300467230486,0,0,0,0,0,0,0,0.118920090777569,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0.315543124386369,0,0,0,0,0,0,0.252332849670158,0.109265571963696,0,0,0,0,0,0,0,0,0,0,0.476128862927481,4.90875714753646,1.80016671457988,0,0,0,0,0,0.134704106029175,0.0717222053926763,0,0,0,0,0.0898252021065869,0,0,0,0,0.603821380773079,0 | ||
|short_description=p@chr5:133451694..133451705,- | |short_description=p@chr5:133451694..133451705,- | ||
}} | }} |
Latest revision as of 09:45, 30 July 2015
Short description: | p@chr5:133451694..133451705, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:133451694..133451705, - |
Coexpression cluster: | C1952_thymus_Hodgkin_acute_CD8_CD4_Whole_lymph |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 1.33e-16 | 25 |
pro-T cell | 1.33e-16 | 25 |
CD4-positive, alpha-beta T cell | 6.34e-12 | 6 |
lymphoid lineage restricted progenitor cell | 3.02e-11 | 52 |
lymphocyte | 4.97e-11 | 53 |
common lymphoid progenitor | 4.97e-11 | 53 |
mature alpha-beta T cell | 6.51e-09 | 18 |
alpha-beta T cell | 6.51e-09 | 18 |
immature T cell | 6.51e-09 | 18 |
mature T cell | 6.51e-09 | 18 |
immature alpha-beta T cell | 6.51e-09 | 18 |
Ontology term | p-value | n |
---|---|---|
lymph node | 5.26e-18 | 1 |
thymus | 9.51e-18 | 4 |
hemolymphoid system gland | 9.51e-18 | 4 |
thymic region | 9.51e-18 | 4 |
pharyngeal gland | 9.51e-18 | 4 |
thymus primordium | 9.51e-18 | 4 |
pharyngeal epithelium | 3.64e-12 | 6 |
hemopoietic organ | 1.46e-10 | 7 |
immune organ | 1.46e-10 | 7 |
neck | 1.16e-07 | 10 |
gland of gut | 1.16e-07 | 10 |
chordate pharynx | 1.16e-07 | 10 |
pharyngeal region of foregut | 1.16e-07 | 10 |
pharynx | 4.85e-07 | 11 |
entire pharyngeal arch endoderm | 4.85e-07 | 11 |
early pharyngeal endoderm | 4.85e-07 | 11 |