FFCP PHASE1:Hg19::chr4:108991916..108991933,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51176 | |EntrezGene=51176 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6551 | |HGNC=6551 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=117bp_to_ENST00000507470_5end | |association_with_transcript=117bp_to_ENST00000507470_5end | ||
|cluster_id=chr4:108991916..108991933,- | |||
|coexpression_cluster_id=C921 | |||
|description=CAGE_peak_36_at_LEF1_5end | |description=CAGE_peak_36_at_LEF1_5end | ||
|id=chr4:108991916..108991933,- | |id=chr4:108991916..108991933,- | ||
|ontology_enrichment_celltype=CL:0000084!8.81e-24!25;CL:0000827!8.81e-24!25;CL:0000791!1.04e-22!18;CL:0000789!1.04e-22!18;CL:0002420!1.04e-22!18;CL:0002419!1.04e-22!18;CL:0000790!1.04e-22!18;CL:0000542!1.07e-18!53;CL:0000051!1.07e-18!53;CL:0000838!2.10e-17!52;CL:0000624!1.32e-14!6;CL:0000625!3.20e-12!11;CL:0002087!5.82e-09!119;CL:0000898!5.21e-08!3;CL:0000842!1.24e-07!3;CL:0000623!2.22e-07!3;CL:0000825!2.22e-07!3 | |ontology_enrichment_celltype=CL:0000084!8.81e-24!25;CL:0000827!8.81e-24!25;CL:0000791!1.04e-22!18;CL:0000789!1.04e-22!18;CL:0002420!1.04e-22!18;CL:0002419!1.04e-22!18;CL:0000790!1.04e-22!18;CL:0000542!1.07e-18!53;CL:0000051!1.07e-18!53;CL:0000838!2.10e-17!52;CL:0000624!1.32e-14!6;CL:0000625!3.20e-12!11;CL:0002087!5.82e-09!119;CL:0000898!5.21e-08!3;CL:0000842!1.24e-07!3;CL:0000623!2.22e-07!3;CL:0000825!2.22e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000084;5.36e-19;25!CL:0000624;9.25e-10;6!CL:0000815;6.35e-08;2!CL:0000792;6.35e-08;2!CL:0002677;6.35e-08;2!CL:0000791;3.50e-07;18!CL:0000789;3.50e-07;18!CL:0002419;3.50e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,5.28e-19,25;CL:0000827,5.28e-19,25;CL:0000624,8.86e-10,6;CL:0000838,5.50e-09,52;CL:0000542,8.25e-09,53;CL:0000051,8.25e-09,53;CL:0000815,5.37e-08,2;CL:0000792,5.37e-08,2;CL:0002677,5.37e-08,2;CL:0000791,3.46e-07,18;CL:0000789,3.46e-07,18;CL:0002420,3.46e-07,18;CL:0002419,3.46e-07,18;CL:0000790,3.46e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000790;3.50e-07;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1909;6.35e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,7.52e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0004177!5.69e-11!7;UBERON:0000178!7.45e-11!15;UBERON:0000179!7.45e-11!15;UBERON:0000463!7.45e-11!15 | |ontology_enrichment_uberon=UBERON:0004177!5.69e-11!7;UBERON:0000178!7.45e-11!15;UBERON:0000179!7.45e-11!15;UBERON:0000463!7.45e-11!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;2.73e-27;2!UBERON:0005058;2.73e-27;2!UBERON:0009113;2.73e-27;2!UBERON:0004177;1.58e-11;5!UBERON:0005057;1.58e-11;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,3.37e-14,4;UBERON:0005058,3.37e-14,4;UBERON:0009113,3.37e-14,4;UBERON:0003295,3.37e-14,4;UBERON:0005562,3.37e-14,4;UBERON:0003351,8.86e-10,6;UBERON:0004177,1.65e-08,7;UBERON:0005057,1.65e-08,7 | |||
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| ||
|short_description=p36@LEF1 | |short_description=p36@LEF1 | ||
}} | }} |
Latest revision as of 08:05, 20 September 2015
Short description: | p36@LEF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_36_at_LEF1_5end |
Coexpression cluster: | C921_chronic_thymus_CD4_acute_CD8_Hodgkin_Peripheral |
Association with transcript: | 117bp_to_ENST00000507470_5end |
EntrezGene: | LEF1 |
HGNC: | 6551 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 5.28e-19 | 25 |
pro-T cell | 5.28e-19 | 25 |
CD4-positive, alpha-beta T cell | 8.86e-10 | 6 |
lymphoid lineage restricted progenitor cell | 5.50e-09 | 52 |
lymphocyte | 8.25e-09 | 53 |
common lymphoid progenitor | 8.25e-09 | 53 |
regulatory T cell | 5.37e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 5.37e-08 | 2 |
naive regulatory T cell | 5.37e-08 | 2 |
mature alpha-beta T cell | 3.46e-07 | 18 |
alpha-beta T cell | 3.46e-07 | 18 |
immature T cell | 3.46e-07 | 18 |
mature T cell | 3.46e-07 | 18 |
immature alpha-beta T cell | 3.46e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
thymus | 3.37e-14 | 4 |
hemolymphoid system gland | 3.37e-14 | 4 |
thymic region | 3.37e-14 | 4 |
pharyngeal gland | 3.37e-14 | 4 |
thymus primordium | 3.37e-14 | 4 |
pharyngeal epithelium | 8.86e-10 | 6 |
hemopoietic organ | 1.65e-08 | 7 |
immune organ | 1.65e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
melanoma | 7.52e-08 | 2 |