FFCP PHASE1:Hg19::chr7:155601826..155601846,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6469 | |EntrezGene=6469 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10848 | |HGNC=10848 | ||
|TSSclassifier=strong | |||
|UniProt=C9JC48,F8WEH4,F8WB84 | |UniProt=C9JC48,F8WEH4,F8WB84 | ||
|association_with_transcript=-60bp_to_ENST00000430104,ENST00000435425,ENST00000441114,uc003wmh.1,uc003wmi.1,uc003wmj.1_5end | |association_with_transcript=-60bp_to_ENST00000430104,ENST00000435425,ENST00000441114,uc003wmh.1,uc003wmi.1,uc003wmj.1_5end | ||
|cluster_id=chr7:155601826..155601846,- | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_3_at_SHH_5end | |description=CAGE_peak_3_at_SHH_5end | ||
|id=chr7:155601826..155601846,- | |id=chr7:155601826..155601846,- | ||
|ontology_enrichment_celltype=CL:0000181!1.80e-12!12;CL:0000417!1.80e-12!12;CL:0000668!1.80e-12!12;CL:0000414!1.80e-12!12;CL:0000412!1.80e-12!12;CL:0000182!1.80e-12!12;CL:1000497!2.22e-09!18;CL:0002518!2.22e-09!18;CL:1000507!1.92e-08!12;CL:1000494!1.92e-08!12;CL:0000223!4.76e-07!59 | |ontology_enrichment_celltype=CL:0000181!1.80e-12!12;CL:0000417!1.80e-12!12;CL:0000668!1.80e-12!12;CL:0000414!1.80e-12!12;CL:0000412!1.80e-12!12;CL:0000182!1.80e-12!12;CL:1000497!2.22e-09!18;CL:0002518!2.22e-09!18;CL:1000507!1.92e-08!12;CL:1000494!1.92e-08!12;CL:0000223!4.76e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0000182;4.21e-32;12!CL:0000313;3.12e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.41e-32,12;CL:0000223,6.82e-15,58;CL:0000313,1.99e-09,1 | |||
|ontology_enrichment_development_v019=UBERON:0009497;4.18e-38;13!UBERON:0004161;9.08e-35;11!UBERON:0001041;3.81e-20;30!UBERON:0003104;7.36e-15;31!CL:0000223;2.34e-10;58!UBERON:0006242;3.12e-09;1 | |||
|ontology_enrichment_disease=DOID:3493!9.09e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:2152;3.12e-09;1!DOID:299;7.83e-08;25 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,1.99e-09,1;DOID:299,8.26e-08,25;DOID:305,3.48e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0005172!8.72e-24!55;UBERON:0005173!8.72e-24!55;UBERON:0002417!8.10e-21!61;UBERON:0000916!8.10e-21!61;UBERON:0009497!1.87e-18!25;UBERON:0000015!1.87e-18!25;UBERON:0002423!1.87e-18!25;UBERON:0006235!1.87e-18!25;UBERON:0004161!1.87e-18!25;UBERON:0008835!3.66e-18!22;UBERON:0003894!3.66e-18!22;UBERON:0009854!3.04e-17!23;UBERON:0007499!1.26e-15!25;UBERON:0002107!4.20e-15!19;UBERON:0006925!4.20e-15!19;UBERON:0008836!4.20e-15!19;UBERON:0009856!6.50e-15!26;UBERON:0005177!8.26e-14!107;UBERON:0002113!2.13e-13!27;UBERON:0003918!2.13e-13!27;UBERON:0005095!2.13e-13!27;UBERON:0007687!2.13e-13!27;UBERON:0007023!5.60e-13!115;UBERON:0000025!5.42e-12!194;UBERON:0009569!1.56e-11!113;UBERON:0000058!1.90e-11!26;UBERON:0000489!7.13e-11!32;UBERON:0003929!7.50e-11!54;UBERON:0004111!8.33e-11!241;UBERON:0000466!1.38e-10!126;UBERON:0000481!1.52e-10!347;UBERON:0005057!1.99e-10!26;UBERON:0006554!5.27e-10!44;UBERON:0001008!1.04e-09!45;UBERON:0006947!1.71e-09!3;UBERON:0004054!1.71e-09!3;UBERON:0000080!2.33e-09!18;UBERON:0002120!2.33e-09!18;UBERON:0004875!2.33e-09!18;UBERON:0005721!2.33e-09!18;UBERON:0005754!2.33e-09!18;UBERON:0007297!2.33e-09!18;UBERON:0005911!8.88e-09!82;UBERON:0009773!1.92e-08!12;UBERON:0001231!1.92e-08!12;UBERON:0004810!1.92e-08!12;UBERON:0002365!2.15e-08!31;UBERON:0002330!2.15e-08!31;UBERON:0004876!2.78e-08!20;UBERON:0000477!3.30e-08!286;UBERON:0004921!3.42e-08!129;UBERON:0004185!3.42e-08!129;UBERON:0001869!6.29e-08!32;UBERON:0003887!8.02e-08!21;UBERON:0006555!1.02e-07!17;UBERON:0005103!1.02e-07!17;UBERON:0000083!1.02e-07!17;UBERON:0009201!1.02e-07!17;UBERON:0004819!1.02e-07!17;UBERON:0006553!1.02e-07!17;UBERON:0003074!1.02e-07!17;UBERON:0003060!1.02e-07!17;UBERON:0001893!2.36e-07!34;UBERON:0005904!3.26e-07!4;UBERON:0002368!3.41e-07!35;UBERON:0001049!3.92e-07!57;UBERON:0005068!3.92e-07!57;UBERON:0006241!3.92e-07!57;UBERON:0007135!3.92e-07!57;UBERON:0000062!5.16e-07!511;UBERON:0000369!5.69e-07!4;UBERON:0002435!5.69e-07!4;UBERON:0000204!5.69e-07!4;UBERON:0010082!5.69e-07!4;UBERON:0000475!7.31e-07!365;UBERON:0002616!8.58e-07!59 | |ontology_enrichment_uberon=UBERON:0005172!8.72e-24!55;UBERON:0005173!8.72e-24!55;UBERON:0002417!8.10e-21!61;UBERON:0000916!8.10e-21!61;UBERON:0009497!1.87e-18!25;UBERON:0000015!1.87e-18!25;UBERON:0002423!1.87e-18!25;UBERON:0006235!1.87e-18!25;UBERON:0004161!1.87e-18!25;UBERON:0008835!3.66e-18!22;UBERON:0003894!3.66e-18!22;UBERON:0009854!3.04e-17!23;UBERON:0007499!1.26e-15!25;UBERON:0002107!4.20e-15!19;UBERON:0006925!4.20e-15!19;UBERON:0008836!4.20e-15!19;UBERON:0009856!6.50e-15!26;UBERON:0005177!8.26e-14!107;UBERON:0002113!2.13e-13!27;UBERON:0003918!2.13e-13!27;UBERON:0005095!2.13e-13!27;UBERON:0007687!2.13e-13!27;UBERON:0007023!5.60e-13!115;UBERON:0000025!5.42e-12!194;UBERON:0009569!1.56e-11!113;UBERON:0000058!1.90e-11!26;UBERON:0000489!7.13e-11!32;UBERON:0003929!7.50e-11!54;UBERON:0004111!8.33e-11!241;UBERON:0000466!1.38e-10!126;UBERON:0000481!1.52e-10!347;UBERON:0005057!1.99e-10!26;UBERON:0006554!5.27e-10!44;UBERON:0001008!1.04e-09!45;UBERON:0006947!1.71e-09!3;UBERON:0004054!1.71e-09!3;UBERON:0000080!2.33e-09!18;UBERON:0002120!2.33e-09!18;UBERON:0004875!2.33e-09!18;UBERON:0005721!2.33e-09!18;UBERON:0005754!2.33e-09!18;UBERON:0007297!2.33e-09!18;UBERON:0005911!8.88e-09!82;UBERON:0009773!1.92e-08!12;UBERON:0001231!1.92e-08!12;UBERON:0004810!1.92e-08!12;UBERON:0002365!2.15e-08!31;UBERON:0002330!2.15e-08!31;UBERON:0004876!2.78e-08!20;UBERON:0000477!3.30e-08!286;UBERON:0004921!3.42e-08!129;UBERON:0004185!3.42e-08!129;UBERON:0001869!6.29e-08!32;UBERON:0003887!8.02e-08!21;UBERON:0006555!1.02e-07!17;UBERON:0005103!1.02e-07!17;UBERON:0000083!1.02e-07!17;UBERON:0009201!1.02e-07!17;UBERON:0004819!1.02e-07!17;UBERON:0006553!1.02e-07!17;UBERON:0003074!1.02e-07!17;UBERON:0003060!1.02e-07!17;UBERON:0001893!2.36e-07!34;UBERON:0005904!3.26e-07!4;UBERON:0002368!3.41e-07!35;UBERON:0001049!3.92e-07!57;UBERON:0005068!3.92e-07!57;UBERON:0006241!3.92e-07!57;UBERON:0007135!3.92e-07!57;UBERON:0000062!5.16e-07!511;UBERON:0000369!5.69e-07!4;UBERON:0002435!5.69e-07!4;UBERON:0000204!5.69e-07!4;UBERON:0010082!5.69e-07!4;UBERON:0000475!7.31e-07!365;UBERON:0002616!8.58e-07!59 | ||
|ontology_enrichment_uberon_v019=UBERON:0002423;4.39e-37;25!UBERON:0002107;3.52e-33;19!UBERON:0006925;3.52e-33;19!UBERON:0002365;2.88e-19;31!UBERON:0002330;2.88e-19;31!UBERON:0002368;7.90e-17;33!UBERON:0005172;2.90e-13;52!UBERON:0005173;2.90e-13;52!UBERON:0000949;5.10e-13;43!UBERON:0004911;3.12e-09;1!UBERON:0002171;3.12e-09;1!UBERON:0006518;3.12e-09;1!UBERON:0008949;3.12e-09;1!UBERON:0000101;3.12e-09;1!UBERON:0002167;3.12e-09;1!UBERON:0002417;2.18e-08;58!UBERON:0000916;2.18e-08;58!UBERON:0002530;8.24e-08;57!UBERON:0001007;5.35e-07;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0009497,4.05e-37,25;UBERON:0000015,4.05e-37,25;UBERON:0002423,4.05e-37,25;UBERON:0006235,4.05e-37,25;UBERON:0004161,4.05e-37,25;UBERON:0008835,3.40e-35,22;UBERON:0003894,3.40e-35,22;UBERON:0009854,1.34e-33,23;UBERON:0002107,2.28e-33,19;UBERON:0006925,2.28e-33,19;UBERON:0008836,2.28e-33,19;UBERON:0007499,8.64e-31,25;UBERON:0009856,1.51e-29,26;UBERON:0003929,6.47e-23,54;UBERON:0002365,5.91e-20,31;UBERON:0002330,5.91e-20,31;UBERON:0005172,1.96e-19,54;UBERON:0005173,1.96e-19,54;UBERON:0005911,2.74e-19,82;UBERON:0002368,1.60e-17,35;UBERON:0002417,2.77e-17,60;UBERON:0000916,2.77e-17,60;UBERON:0000949,2.03e-16,45;UBERON:0005177,4.00e-15,101;UBERON:0004921,2.53e-14,118;UBERON:0001041,3.01e-13,87;UBERON:0001007,9.58e-13,145;UBERON:0001555,9.58e-13,145;UBERON:0007026,9.58e-13,145;UBERON:0002530,3.49e-12,59;UBERON:0009569,1.59e-11,112;UBERON:0004119,2.86e-11,160;UBERON:0000925,2.86e-11,160;UBERON:0006595,2.86e-11,160;UBERON:0004911,1.99e-09,1;UBERON:0002171,3.25e-09,1;UBERON:0006518,3.25e-09,1;UBERON:0008949,3.25e-09,1;UBERON:0000101,3.25e-09,1;UBERON:0002167,3.25e-09,1;UBERON:0002100,1.54e-08,199;UBERON:0003914,7.80e-08,117;UBERON:0005256,1.97e-07,122;UBERON:0003104,2.44e-07,160;UBERON:0009142,2.44e-07,160;UBERON:0001048,2.63e-07,160;UBERON:0000490,6.62e-07,148 | |||
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|short_description=p3@SHH | |short_description=p3@SHH | ||
}} | }} |
Latest revision as of 10:22, 17 September 2015
Short description: | p3@SHH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SHH_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -60bp_to_ENST00000430104, ENST00000435425, ENST00000441114, uc003wmh.1, uc003wmi.1, uc003wmj.1_5end |
EntrezGene: | SHH |
HGNC: | 10848 |
UniProt: | C9JC48F8WEH4F8WB84 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.41e-32 | 12 |
endodermal cell | 6.82e-15 | 58 |
serous secreting cell | 1.99e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 1.99e-09 | 1 |
adenocarcinoma | 8.26e-08 | 25 |
carcinoma | 3.48e-07 | 106 |