FFCP PHASE1:Hg19::chr7:142162390..142162425,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=12231 | |HGNC=12231 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000390371,uc011krw.1_5end | |association_with_transcript=0bp_to_ENST00000390371,uc011krw.1_5end | ||
|cluster_id=chr7:142162390..142162425,- | |||
|coexpression_cluster_id=C496 | |||
|description=CAGE_peak_1_at_TRBV6-6_5end | |description=CAGE_peak_1_at_TRBV6-6_5end | ||
|id=chr7:142162390..142162425,- | |id=chr7:142162390..142162425,- | ||
|ontology_enrichment_celltype=CL:0000791!2.10e-33!18;CL:0000789!2.10e-33!18;CL:0002420!2.10e-33!18;CL:0002419!2.10e-33!18;CL:0000790!2.10e-33!18;CL:0000084!6.77e-23!25;CL:0000827!6.77e-23!25;CL:0000625!5.52e-20!11;CL:0000624!1.09e-17!6;CL:0000838!2.48e-13!52;CL:0000542!5.42e-13!53;CL:0000051!5.42e-13!53;CL:0000898!3.95e-10!3;CL:0000842!9.11e-09!3;CL:0000623!1.33e-08!3;CL:0000825!1.33e-08!3;CL:0002087!5.36e-08!119;CL:0000815!2.24e-07!2;CL:0000792!2.24e-07!2;CL:0002677!2.24e-07!2;CL:0000738!2.28e-07!140;CL:0000037!3.05e-07!172;CL:0000566!3.05e-07!172 | |ontology_enrichment_celltype=CL:0000791!2.10e-33!18;CL:0000789!2.10e-33!18;CL:0002420!2.10e-33!18;CL:0002419!2.10e-33!18;CL:0000790!2.10e-33!18;CL:0000084!6.77e-23!25;CL:0000827!6.77e-23!25;CL:0000625!5.52e-20!11;CL:0000624!1.09e-17!6;CL:0000838!2.48e-13!52;CL:0000542!5.42e-13!53;CL:0000051!5.42e-13!53;CL:0000898!3.95e-10!3;CL:0000842!9.11e-09!3;CL:0000623!1.33e-08!3;CL:0000825!1.33e-08!3;CL:0002087!5.36e-08!119;CL:0000815!2.24e-07!2;CL:0000792!2.24e-07!2;CL:0002677!2.24e-07!2;CL:0000738!2.28e-07!140;CL:0000037!3.05e-07!172;CL:0000566!3.05e-07!172 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.38e-59;18!CL:0000789;1.38e-59;18!CL:0002419;1.38e-59;18!CL:0000084;5.55e-42;25!CL:0000625;2.82e-35;11!CL:0000624;3.32e-30;6!CL:0000898;7.36e-17;3!CL:0000815;6.27e-12;2!CL:0000792;6.27e-12;2!CL:0002677;6.27e-12;2!CL:0000542;1.24e-09;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.78e-59,18;CL:0000789,1.78e-59,18;CL:0002420,1.78e-59,18;CL:0002419,1.78e-59,18;CL:0000790,1.78e-59,18;CL:0000084,6.65e-42,25;CL:0000827,6.65e-42,25;CL:0000625,4.61e-35,11;CL:0000624,2.45e-30,6;CL:0000838,1.95e-18,52;CL:0000542,4.99e-18,53;CL:0000051,4.99e-18,53;CL:0000898,7.97e-17,3;CL:0000815,6.27e-12,2;CL:0000792,6.27e-12,2;CL:0002677,6.27e-12,2;CL:0002087,1.45e-07,115;CL:0000738,7.32e-07,136 | |||
|ontology_enrichment_development_v019=CL:0000790;1.38e-59;18!CL:0000051;1.24e-09;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!3.56e-16!15;UBERON:0000179!3.56e-16!15;UBERON:0000463!3.56e-16!15;UBERON:0004177!2.50e-10!7;UBERON:0002370!1.05e-07!4;UBERON:0005058!1.05e-07!4;UBERON:0009113!1.05e-07!4;UBERON:0003295!1.05e-07!4;UBERON:0005562!1.05e-07!4;UBERON:0002193!9.67e-07!112 | |ontology_enrichment_uberon=UBERON:0000178!3.56e-16!15;UBERON:0000179!3.56e-16!15;UBERON:0000463!3.56e-16!15;UBERON:0004177!2.50e-10!7;UBERON:0002370!1.05e-07!4;UBERON:0005058!1.05e-07!4;UBERON:0009113!1.05e-07!4;UBERON:0003295!1.05e-07!4;UBERON:0005562!1.05e-07!4;UBERON:0002193!9.67e-07!112 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;5.07e-12;2!UBERON:0005058;5.07e-12;2!UBERON:0009113;5.07e-12;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,8.26e-13,4;UBERON:0005058,8.26e-13,4;UBERON:0009113,8.26e-13,4;UBERON:0003295,8.26e-13,4;UBERON:0005562,8.26e-13,4;UBERON:0003351,1.11e-08,6;UBERON:0001042,1.55e-08,10;UBERON:0009145,1.55e-08,10;UBERON:0006562,9.15e-08,11;UBERON:0004177,1.70e-07,7;UBERON:0005057,1.70e-07,7 | |||
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| ||
|short_description=p1@TRBV6-6 | |short_description=p1@TRBV6-6 | ||
}} | }} |
Latest revision as of 19:54, 16 September 2015
Short description: | p1@TRBV6-6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRBV6-6_5end |
Coexpression cluster: | C496_thymus_CD4_CD8_hairy_vein_chronic_Peripheral |
Association with transcript: | 0bp_to_ENST00000390371, uc011krw.1_5end |
EntrezGene: | NA |
HGNC: | 12231 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.78e-59 | 18 |
alpha-beta T cell | 1.78e-59 | 18 |
immature T cell | 1.78e-59 | 18 |
mature T cell | 1.78e-59 | 18 |
immature alpha-beta T cell | 1.78e-59 | 18 |
T cell | 6.65e-42 | 25 |
pro-T cell | 6.65e-42 | 25 |
CD8-positive, alpha-beta T cell | 4.61e-35 | 11 |
CD4-positive, alpha-beta T cell | 2.45e-30 | 6 |
lymphoid lineage restricted progenitor cell | 1.95e-18 | 52 |
lymphocyte | 4.99e-18 | 53 |
common lymphoid progenitor | 4.99e-18 | 53 |
naive T cell | 7.97e-17 | 3 |
regulatory T cell | 6.27e-12 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 6.27e-12 | 2 |
naive regulatory T cell | 6.27e-12 | 2 |
nongranular leukocyte | 1.45e-07 | 115 |
leukocyte | 7.32e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
thymus | 8.26e-13 | 4 |
hemolymphoid system gland | 8.26e-13 | 4 |
thymic region | 8.26e-13 | 4 |
pharyngeal gland | 8.26e-13 | 4 |
thymus primordium | 8.26e-13 | 4 |
pharyngeal epithelium | 1.11e-08 | 6 |
chordate pharynx | 1.55e-08 | 10 |
pharyngeal region of foregut | 1.55e-08 | 10 |
pharynx | 9.15e-08 | 11 |
hemopoietic organ | 1.70e-07 | 7 |
immune organ | 1.70e-07 | 7 |