FFCP PHASE1:Hg19::chr5:153857819..153857824,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9421 | |EntrezGene=9421 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4807 | |HGNC=4807 | ||
|TSSclassifier=strong | |||
|UniProt=O96004 | |UniProt=O96004 | ||
|association_with_transcript=0bp_to_ENST00000231121,NM_004821,uc003lvn.2_5end | |association_with_transcript=0bp_to_ENST00000231121,NM_004821,uc003lvn.2_5end | ||
|cluster_id=chr5:153857819..153857824,- | |||
|coexpression_cluster_id=C360 | |||
|description=CAGE_peak_3_at_HAND1_5end | |description=CAGE_peak_3_at_HAND1_5end | ||
|id=chr5:153857819..153857824,- | |id=chr5:153857819..153857824,- | ||
|ontology_enrichment_celltype=CL:0000349!4.63e-12!3;CL:0002577!4.63e-12!3;CL:0002536!1.88e-08!2;CL:0002537!2.64e-07!5 | |ontology_enrichment_celltype=CL:0000349!4.63e-12!3;CL:0002577!4.63e-12!3;CL:0002536!1.88e-08!2;CL:0002537!2.64e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0000349;9.45e-36;19!CL:0002577;1.49e-22;3!CL:0002536;2.36e-15;2!CL:0002537;1.20e-13;5!CL:0000333;5.63e-13;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,9.47e-36,19;CL:0002577,1.39e-22,3;CL:0002536,2.36e-15,2;CL:0002537,1.20e-13,5 | |||
|ontology_enrichment_development_v019=UBERON:0004140;2.02e-08;1!UBERON:0010226;2.69e-08;1!UBERON:0006242;4.72e-08;1 | |||
|ontology_enrichment_disease=DOID:3095!1.13e-10!22;DOID:2994!1.13e-10!22;DOID:169!1.50e-09!6;DOID:114!3.32e-08!2 | |||
|ontology_enrichment_disease_v019=DOID:114;6.81e-15;2!DOID:169;6.68e-11;6!DOID:178;2.69e-08;1!DOID:326;2.69e-08;1!DOID:3978;2.69e-08;1!DOID:3394;2.69e-08;1!DOID:5844;2.69e-08;1!DOID:1287;6.94e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:114,7.31e-15,2;DOID:169,5.84e-11,6;DOID:178,2.69e-08,1;DOID:326,2.69e-08,1;DOID:3978,2.69e-08,1;DOID:3394,2.69e-08,1;DOID:5844,2.69e-08,1;DOID:1287,7.18e-08,4;DOID:171,9.25e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0005631!3.92e-24!14;UBERON:0000158!3.92e-24!14;UBERON:0000478!8.03e-19!24;UBERON:0001987!1.25e-14!4;UBERON:0004340!1.25e-14!4;UBERON:0000305!3.13e-13!7;UBERON:0003124!1.45e-12!7;UBERON:0004871!1.60e-11!8;UBERON:0000013!1.85e-11!5;UBERON:0002410!1.85e-11!5;UBERON:0000059!1.53e-10!11;UBERON:0004923!7.40e-09!57 | |ontology_enrichment_uberon=UBERON:0005631!3.92e-24!14;UBERON:0000158!3.92e-24!14;UBERON:0000478!8.03e-19!24;UBERON:0001987!1.25e-14!4;UBERON:0004340!1.25e-14!4;UBERON:0000305!3.13e-13!7;UBERON:0003124!1.45e-12!7;UBERON:0004871!1.60e-11!8;UBERON:0000013!1.85e-11!5;UBERON:0002410!1.85e-11!5;UBERON:0000059!1.53e-10!11;UBERON:0004923!7.40e-09!57 | ||
|ontology_enrichment_uberon_v019=UBERON:0000478;5.88e-28;24!UBERON:0000305;1.25e-25;7!UBERON:0005631;3.64e-25;10!UBERON:0000158;3.64e-25;10!UBERON:0001987;4.62e-17;4!UBERON:0000013;5.63e-13;5!UBERON:0002410;5.63e-13;5!UBERON:0007100;1.42e-09;25!UBERON:0002146;2.33e-08;1!UBERON:0005623;2.33e-08;1!UBERON:0002084;2.69e-08;1!UBERON:0002082;2.69e-08;1!UBERON:0000010;2.00e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,5.02e-40,14;UBERON:0000158,5.02e-40,14;UBERON:0000478,5.89e-28,24;UBERON:0000305,1.26e-25,7;UBERON:0004871,2.07e-22,8;UBERON:0001987,4.39e-17,4;UBERON:0004340,4.39e-17,4;UBERON:0003124,1.44e-16,7;UBERON:0000013,4.78e-13,5;UBERON:0002410,4.78e-13,5;UBERON:0004923,4.97e-11,66;UBERON:0007100,8.07e-09,27;UBERON:0002146,2.33e-08,1;UBERON:0005623,2.33e-08,1;UBERON:0002084,2.50e-08,1;UBERON:0002082,2.50e-08,1;UBERON:0010226,2.50e-08,1;UBERON:0000010,1.83e-07,8 | |||
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| ||
|short_description=p3@HAND1 | |short_description=p3@HAND1 | ||
}} | }} |
Latest revision as of 11:59, 16 September 2015
Short description: | p3@HAND1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HAND1_5end |
Coexpression cluster: | C360_Placental_Amniotic_amniotic_teratocarcinoma_chorionic_neuroblastoma_H9 |
Association with transcript: | 0bp_to_ENST00000231121, NM_004821, uc003lvn.2_5end |
EntrezGene: | HAND1 |
HGNC: | 4807 |
UniProt: | O96004 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 9.47e-36 | 19 |
placental epithelial cell | 1.39e-22 | 3 |
amniotic epithelial cell | 2.36e-15 | 2 |
amnion mesenchymal stem cell | 1.20e-13 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 5.02e-40 | 14 |
membranous layer | 5.02e-40 | 14 |
extraembryonic structure | 5.89e-28 | 24 |
amnion | 1.26e-25 | 7 |
somatic layer of lateral plate mesoderm | 2.07e-22 | 8 |
placenta | 4.39e-17 | 4 |
allantois | 4.39e-17 | 4 |
chorion | 1.44e-16 | 7 |
sympathetic nervous system | 4.78e-13 | 5 |
autonomic nervous system | 4.78e-13 | 5 |
organ component layer | 4.97e-11 | 66 |
primary circulatory organ | 8.07e-09 | 27 |
pulmonary valve | 2.33e-08 | 1 |
semi-lunar valve | 2.33e-08 | 1 |
heart left ventricle | 2.50e-08 | 1 |
cardiac ventricle | 2.50e-08 | 1 |
future cardiac ventricle | 2.50e-08 | 1 |
peripheral nervous system | 1.83e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
heart disease | 7.31e-15 | 2 |
neuroendocrine tumor | 5.84e-11 | 6 |
vascular disease | 2.69e-08 | 1 |
ischemia | 2.69e-08 | 1 |
extrinsic cardiomyopathy | 2.69e-08 | 1 |
myocardial ischemia | 2.69e-08 | 1 |
myocardial infarction | 2.69e-08 | 1 |
cardiovascular system disease | 7.18e-08 | 4 |
neuroectodermal tumor | 9.25e-07 | 10 |