FFCP PHASE1:Hg19::chr3:127317301..127317306,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4171 | |EntrezGene=4171 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6944 | |HGNC=6944 | ||
|TSSclassifier=strong | |||
|UniProt=F5H1E9 | |UniProt=F5H1E9 | ||
|association_with_transcript=29bp_to_ENST00000543142_5end | |association_with_transcript=29bp_to_ENST00000543142_5end | ||
|cluster_id=chr3:127317301..127317306,+ | |||
|description=CAGE_peak_2_at_MCM2_5end | |description=CAGE_peak_2_at_MCM2_5end | ||
|id=chr3:127317301..127317306,+ | |id=chr3:127317301..127317306,+ | ||
|ontology_enrichment_celltype=CL:0002319!5.09e-11!25;CL:0000066!1.58e-09!254;CL:0000095!3.44e-08!17;CL:0000123!3.44e-08!17;CL:0000133!3.64e-07!59;CL:0000333!7.19e-07!41;CL:0000243!8.08e-07!15;CL:0000125!8.08e-07!15;CL:0000030!8.08e-07!15;CL:0000339!8.08e-07!15 | |ontology_enrichment_celltype=CL:0002319!5.09e-11!25;CL:0000066!1.58e-09!254;CL:0000095!3.44e-08!17;CL:0000123!3.44e-08!17;CL:0000133!3.64e-07!59;CL:0000333!7.19e-07!41;CL:0000243!8.08e-07!15;CL:0000125!8.08e-07!15;CL:0000030!8.08e-07!15;CL:0000339!8.08e-07!15 | ||
|ontology_enrichment_celltype_v019=CL:0000333;7.17e-13;5!CL:0002321;3.60e-12;15!CL:0002319;6.56e-11;25!CL:0002322;2.67e-08;5!CL:0000540;1.43e-07;6!CL:0000404;1.43e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000133,2.12e-11,59;CL:0002319,6.97e-11,25;CL:0000221,1.21e-09,72;CL:0000333,1.76e-09,41;CL:0002322,3.78e-08,5;CL:0000047,3.80e-08,8;CL:0000540,1.62e-07,6;CL:0000031,1.62e-07,6;CL:0000404,1.62e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.04e-09;29!CL:0000031;1.43e-07;6!CL:0000133;7.04e-07;59 | |||
|ontology_enrichment_disease=DOID:14566!4.00e-45!239;DOID:162!8.94e-45!235;DOID:0050687!9.60e-36!143;DOID:305!1.23e-29!106;DOID:0050686!2.29e-15!137;DOID:2531!5.99e-07!51;DOID:0060083!5.99e-07!51;DOID:3095!8.01e-07!22;DOID:2994!8.01e-07!22 | |ontology_enrichment_disease=DOID:14566!4.00e-45!239;DOID:162!8.94e-45!235;DOID:0050687!9.60e-36!143;DOID:305!1.23e-29!106;DOID:0050686!2.29e-15!137;DOID:2531!5.99e-07!51;DOID:0060083!5.99e-07!51;DOID:3095!8.01e-07!22;DOID:2994!8.01e-07!22 | ||
|ontology_enrichment_disease_v019=DOID:3095;7.89e-12;22!DOID:2994;7.89e-12;22!DOID:171;1.59e-11;10!DOID:169;1.18e-10;6!DOID:1325;2.68e-09;7!DOID:3904;2.68e-09;7 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.10e-22,143;DOID:162,2.03e-19,235;DOID:14566,1.01e-18,239;DOID:305,4.22e-17,106;DOID:3095,4.67e-12,22;DOID:2994,4.67e-12,22;DOID:171,5.62e-12,10;DOID:169,6.30e-11,6;DOID:1325,3.28e-09,7;DOID:3904,3.28e-09,7 | |||
|ontology_enrichment_uberon=UBERON:0001737!4.30e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0000013;7.17e-13;5!UBERON:0002410;7.17e-13;5!UBERON:0001737;3.15e-12;9!UBERON:0001557;3.15e-12;9!UBERON:0000010;5.86e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,3.35e-13,5;UBERON:0002410,3.35e-13,5;UBERON:0001737,1.44e-12,9;UBERON:0000010,3.93e-07,8;UBERON:0001557,6.48e-07,19;UBERON:0008947,7.05e-07,38;UBERON:0003258,7.05e-07,38 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.861847406537515,0,0.313454721478088,0.572471974262113,0.410623275218653,1.00434111675842,0.305653622991805,0.903106483949403,0.472264687882075,0,0,0,0.919421224478927,0.6024118375565,0,0.0774672005803016,0.142169232487422,0.293600439334847,0.553995408531877,0,0,0,0,0,0.145398238779565,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0.632924774881769,0.422510572623884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0.205601498999509,0.167186495390678,0,0,0,0,0,0,0,0,0.390178042679635,0,0.552700035571697,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0.267440195783507,0.289648807765598,0,0,0,0,0,0,0,0,0.378139268656271,0,0.087834785693126,0.130979075497713,0,0.370784442784429,0,0,0,0,0,0,0.198762407366705,0,0.347140501607594,0,0,0,0.208994966536811,0,0,0,0.402829317109147,0,0,0,0,0.0892997282840798,0,0.112611480483322,1.53316637465883,0.949265659568129,0.183201743930407,0,0,0,0,0.12663051166458,0.132409180813219,0,0,0,1.06748995729705,0,0,0.269421344139376,0.163461903113459,0,0,0.70296429550139,0,0,0.149448680551801,0.352303495931295,0.323745888736263,0.561803226808994,0,0.122834317311768,0,0,0,0,0,0.336672227908132,0.125118519871964,0,0,0,0,0,0.179389635688862,0,0,0.300091096084402,0.103052529238439,0,0,0.168776332241266,0.194874010322397,0,0.0920498986422993,0,0,0,0.67824236924195,0.193260853163297,0,0,1.09776335516636,1.45782745153634,1.2781333715647,0.207322110030741,4.28945446488568,3.28479623168247,0,0,0,0,0,0.591534000199219,1.68584690078102,1.44606617930089,1.10293972732394,1.30727666455444,0.474541238222193,1.48314438976181,1.56977172100277,1.53898862778556,0,0,0,0,0,0,0,0.882926198829301,0.245976877086227,0.171567810298526,0,2.24803506515239,0.100528972411631,0,0,1.03993478527958,0,0,0,0.288732895522148,0,0,0.790204397959275,1.71697232418975,0,0,0,0,0,0.141775097242386,0.0895585227028483,0.581267877027924,0,0,0.264145302039678,0,0,0,0.063497894292169,0.381988425558278,0,0,0,0,0,0.336393253036082,0.43596006883328,0.07333828582095,0,0,0,0,0,0,0,0.266422179016099,0,0,0,0,0,1.58390374586686,0,0,0,1.2162378064119,0,0,0,0,0,0,0,0.358121926479791,0.112085143993527,0,0,0.256686072559497,0.254094624222463,1.30139853857622,0,0.167516265334349,1.27587750330633,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0.206768026122887,0,0.213455115606889,0,0,0.604780586659361,0.248107807818777,0.153461973288062,0,0,0,0,0,0.308419387605311,0.177561725313127,0.164254312027618,0,0.232420756919918,0.483437798366489,0,0,0,0.182091168006717,0,1.35359883872224,0.0770153371044148,0,0,0.105551628892876,0,0.170093705276516,0.215915916102139,0,0.541892875087706,0,0,0,0.671624264166535,1.53481913652154,0.784306353074702,0,0.328014645699706,0,0.103041011647722,1.00726411300178,1.07262349896764,0,0,0,0.193341436584244,0,0.15350367472613,0.275673144969061,0,0,0.170453254832202,0,0,0,0,0,0,0,0,0.308033580176089,0,0.869932992075073,0,0.143124886741991,0,0,0,0.255897791311334,0,0,0.78494864019923,0,0.274537029736055,0,0,0,0,0.975267478179181,0,0,0.272999822815972,0,1.13008116620243,0,0,0,0,0,0,0,0.563391205064483,0.143411352204052,0,0,0.354761064070598,0,0,0.379473173765715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.427296284509893,0.962479855263359,0.735120647943095,1.48642540100575,0.865615277858669,0.711418433484141,0.159426272728822,0.798317485731266,0.191505370132367,0.211673582723883,0.324621940274555,0,0.456469358066384,0.94007937463814,0,0.50787533340481,0,0.403599414382095,0.425846237690326,1.71752672377882,0.614481528616916,0.447352215784832,0.166849141711909,0.976940477010201,0.556812347790485,0,0.540911356951966,0,1.4098700508785,1.8714054040822,0,0.121360521749513,0.557216921387392,2.27308917445131,0,0.593929361665277,0,0,0,0.111308705022906,2.80166586185491,0.63337622438398,0,0,0.755798243562828,0.818149460017238,0.246169610922139,0,0.898683511473268,0.358042349351218,0,0,0,0,0,0,0,0.260427761085233,0,0,1.365521379426,1.01701460117107,1.65471377237555,1.03423011972439,1.16641845353302,4.5142498682656,0,0,0,0,0,0,1.0893846351899,0.697118721393016,0,0.113942055847001,0.23056390438806,1.16684937732704,0.325942115766024,0,0.0915975934018623,0,0,0.31396051279005,0,0.225595660617181,0.19606253431774,0.503464760927528,0.189753732724185,0.158936578980379,0.210998064528027,0.979396848954886,0.282706142867882,1.08194319871046,0,0,0,0.593042257361244,0.741383633679017,0.313265848516366,0,0,0,0.364909578431332,0.978323094660449,0,0,1.20990716048664,0,0,7.51617097072463,1.14057010536972,0,0.330991955875499,0.941798755221676,0,0.284609546029793,0.416024019039416,0.173559738335131,0.587954384486266,0.435296032902013,0,0.171986032471617,0.870806981601766,1.97341156132701,1.31384731285135,0,0.0882561266915003,0,0.411125773940253,0.596143835108969,0,5.47543871657448,0.0801588202515337,0,0.19980960958213,0.864542502924636,0.572682980829578,0.343189995723929,0.14405479798815,0.248505071130865,1.41416420770077,0.81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| ||
|short_description=p2@MCM2 | |short_description=p2@MCM2 | ||
}} | }} |
Latest revision as of 05:19, 20 September 2015
Short description: | p2@MCM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_MCM2_5end |
Coexpression cluster: | NA |
Association with transcript: | 29bp_to_ENST00000543142_5end |
EntrezGene: | MCM2 |
HGNC: | 6944 |
UniProt: | F5H1E9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectodermal cell | 2.12e-11 | 59 |
neural cell | 6.97e-11 | 25 |
ectodermal cell | 1.21e-09 | 72 |
migratory neural crest cell | 1.76e-09 | 41 |
embryonic stem cell | 3.78e-08 | 5 |
neuronal stem cell | 3.80e-08 | 8 |
neuron | 1.62e-07 | 6 |
neuroblast | 1.62e-07 | 6 |
electrically signaling cell | 1.62e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 3.35e-13 | 5 |
autonomic nervous system | 3.35e-13 | 5 |
larynx | 1.44e-12 | 9 |
peripheral nervous system | 3.93e-07 | 8 |
upper respiratory tract | 6.48e-07 | 19 |
respiratory primordium | 7.05e-07 | 38 |
endoderm of foregut | 7.05e-07 | 38 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.10e-22 | 143 |
cancer | 2.03e-19 | 235 |
disease of cellular proliferation | 1.01e-18 | 239 |
carcinoma | 4.22e-17 | 106 |
germ cell and embryonal cancer | 4.67e-12 | 22 |
germ cell cancer | 4.67e-12 | 22 |
neuroectodermal tumor | 5.62e-12 | 10 |
neuroendocrine tumor | 6.30e-11 | 6 |
bronchus cancer | 3.28e-09 | 7 |
bronchogenic carcinoma | 3.28e-09 | 7 |