FFCP PHASE1:Hg19::chrX:110539421..110539439,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1641 | |EntrezGene=1641 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2714 | |HGNC=2714 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=32bp_to_AK002120_5end | |association_with_transcript=32bp_to_AK002120_5end | ||
|cluster_id=chrX:110539421..110539439,- | |||
|coexpression_cluster_id=C10 | |||
|description=CAGE_peak_3_at_DCX_5end | |description=CAGE_peak_3_at_DCX_5end | ||
|id=chrX:110539421..110539439,- | |id=chrX:110539421..110539439,- | ||
|ontology_enrichment_celltype=CL:0000047!4.32e-11!8;CL:0002322!1.20e-10!5;CL:0000540!9.59e-10!6;CL:0000031!9.59e-10!6;CL:0000404!9.59e-10!6;CL:0000242!3.95e-08!2 | |ontology_enrichment_celltype=CL:0000047!4.32e-11!8;CL:0002322!1.20e-10!5;CL:0000540!9.59e-10!6;CL:0000031!9.59e-10!6;CL:0000404!9.59e-10!6;CL:0000242!3.95e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:0000540;4.15e-30;6!CL:0000404;4.15e-30;6!CL:0002319;4.72e-12;25!CL:0000047;3.70e-11;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.75e-39,8;CL:0000540,4.59e-30,6;CL:0000031,4.59e-30,6;CL:0000404,4.59e-30,6;CL:0002319,4.86e-12,25 | |||
|ontology_enrichment_development_v019=CL:0000031;4.15e-30;6 | |||
|ontology_enrichment_disease=DOID:171!3.65e-08!10 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.45e-31!82;UBERON:0002619!2.63e-30!22;UBERON:0000073!1.08e-29!94;UBERON:0001016!1.08e-29!94;UBERON:0001869!3.43e-29!32;UBERON:0005743!3.84e-29!86;UBERON:0002020!2.56e-27!34;UBERON:0003528!2.56e-27!34;UBERON:0001893!2.97e-27!34;UBERON:0001049!3.58e-27!57;UBERON:0005068!3.58e-27!57;UBERON:0006241!3.58e-27!57;UBERON:0007135!3.58e-27!57;UBERON:0000956!2.28e-26!25;UBERON:0000203!2.28e-26!25;UBERON:0002791!3.51e-25!33;UBERON:0001950!1.03e-24!20;UBERON:0002780!1.76e-24!41;UBERON:0001890!1.76e-24!41;UBERON:0006240!1.76e-24!41;UBERON:0003080!8.50e-24!42;UBERON:0002616!1.19e-23!59;UBERON:0000955!4.57e-23!69;UBERON:0006238!4.57e-23!69;UBERON:0000924!1.85e-18!173;UBERON:0006601!1.85e-18!173;UBERON:0002346!3.09e-18!90;UBERON:0004121!1.37e-16!169;UBERON:0003075!4.76e-16!86;UBERON:0007284!4.76e-16!86;UBERON:0003056!5.13e-15!61;UBERON:0000200!7.56e-14!6;UBERON:0000153!5.19e-13!129;UBERON:0007811!5.19e-13!129;UBERON:0000033!1.05e-12!123;UBERON:0002771!2.59e-11!3;UBERON:0001871!4.50e-11!7;UBERON:0001872!6.61e-11!5;UBERON:0007023!2.15e-08!115;UBERON:0001954!2.59e-08!2;UBERON:0003022!2.59e-08!2;UBERON:0002421!2.59e-08!2;UBERON:0002600!2.59e-08!2;UBERON:0001873!6.20e-08!2;UBERON:0010122!6.20e-08!2;UBERON:0000349!4.60e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0003112;8.53e-21;1!UBERON:0011158;8.53e-21;1!UBERON:0003128;8.53e-21;1!UBERON:0001703;8.53e-21;1!UBERON:0002241;8.53e-21;1!UBERON:0000922;7.89e-10;49!UBERON:0001950;2.83e-09;20!UBERON:0002619;1.61e-08;22!UBERON:0002114;5.18e-08;2!UBERON:0000956;1.33e-07;25!UBERON:0000203;1.33e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003112,7.72e-21,1;UBERON:0011158,7.72e-21,1;UBERON:0003128,7.72e-21,1;UBERON:0001703,7.72e-21,1;UBERON:0002241,7.72e-21,1;UBERON:0004761,7.72e-21,1;UBERON:0009617,7.72e-21,1;UBERON:0001017,5.78e-15,81;UBERON:0001016,1.81e-13,89;UBERON:0005253,4.09e-11,2;UBERON:0001950,2.83e-09,20;UBERON:0002619,1.61e-08,22;UBERON:0011216,2.87e-08,223;UBERON:0002114,5.18e-08,2;UBERON:0000956,1.33e-07,25;UBERON:0000203,1.33e-07,25;UBERON:0004121,6.44e-07,171;UBERON:0000924,6.44e-07,171;UBERON:0006601,6.44e-07,171 | |||
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| ||
|short_description=p3@DCX | |short_description=p3@DCX | ||
}} | }} |
Latest revision as of 01:37, 19 September 2015
Short description: | p3@DCX |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_DCX_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | 32bp_to_AK002120_5end |
EntrezGene: | DCX |
HGNC: | 2714 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.75e-39 | 8 |
neuron | 4.59e-30 | 6 |
neuroblast | 4.59e-30 | 6 |
electrically signaling cell | 4.59e-30 | 6 |
neural cell | 4.86e-12 | 25 |
Ontology term | p-value | n |
---|---|---|
olfactory region | 7.72e-21 | 1 |
primary subdivision of skull | 7.72e-21 | 1 |
cranium | 7.72e-21 | 1 |
neurocranium | 7.72e-21 | 1 |
chondrocranium | 7.72e-21 | 1 |
cartilaginous neurocranium | 7.72e-21 | 1 |
head paraxial mesoderm | 7.72e-21 | 1 |
central nervous system | 5.78e-15 | 81 |
nervous system | 1.81e-13 | 89 |
head mesenchyme | 4.09e-11 | 2 |
neocortex | 2.83e-09 | 20 |
regional part of cerebral cortex | 1.61e-08 | 22 |
organ system subdivision | 2.87e-08 | 223 |
duodenum | 5.18e-08 | 2 |
cerebral cortex | 1.33e-07 | 25 |
pallium | 1.33e-07 | 25 |
ectoderm-derived structure | 6.44e-07 | 171 |
ectoderm | 6.44e-07 | 171 |
presumptive ectoderm | 6.44e-07 | 171 |