FFCP PHASE1:Hg19::chr2:55253343..55253360,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57142 | |EntrezGene=57142 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=14085 | |HGNC=14085 | ||
|TSSclassifier=strong | |||
|UniProt=Q3LIF4 | |UniProt=Q3LIF4 | ||
|association_with_transcript=-139bp_to_AB073351_5end | |association_with_transcript=-139bp_to_AB073351_5end | ||
|cluster_id=chr2:55253343..55253360,- | |||
|coexpression_cluster_id=C552 | |||
|description=CAGE_peak_29_at_RTN4_5end | |description=CAGE_peak_29_at_RTN4_5end | ||
|id=chr2:55253343..55253360,- | |id=chr2:55253343..55253360,- | ||
|ontology_enrichment_celltype=CL:0000047!9.11e-07!8 | |ontology_enrichment_celltype=CL:0000047!9.11e-07!8 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006241;1.22e-17;3!UBERON:0003057;1.22e-17;3!UBERON:0006215;1.61e-08;3!UBERON:0006601;1.14e-07;82!UBERON:0010227;2.16e-07;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.32e-32!82;UBERON:0000073!2.45e-31!94;UBERON:0001016!2.45e-31!94;UBERON:0005743!6.27e-31!86;UBERON:0001049!9.19e-31!57;UBERON:0005068!9.19e-31!57;UBERON:0006241!9.19e-31!57;UBERON:0007135!9.19e-31!57;UBERON:0002616!1.94e-25!59;UBERON:0000955!2.55e-24!69;UBERON:0006238!2.55e-24!69;UBERON:0002780!1.72e-22!41;UBERON:0001890!1.72e-22!41;UBERON:0006240!1.72e-22!41;UBERON:0002020!8.70e-22!34;UBERON:0003528!8.70e-22!34;UBERON:0003080!1.11e-21!42;UBERON:0001893!1.65e-21!34;UBERON:0002346!6.31e-21!90;UBERON:0002791!1.29e-20!33;UBERON:0003075!1.30e-20!86;UBERON:0007284!1.30e-20!86;UBERON:0001869!1.78e-19!32;UBERON:0002619!8.57e-18!22;UBERON:0007023!9.47e-18!115;UBERON:0000924!2.35e-16!173;UBERON:0006601!2.35e-16!173;UBERON:0004121!6.71e-16!169;UBERON:0001950!1.17e-15!20;UBERON:0000956!6.99e-15!25;UBERON:0000203!6.99e-15!25;UBERON:0003056!4.35e-14!61;UBERON:0000033!2.05e-13!123;UBERON:0000153!9.16e-13!129;UBERON:0007811!9.16e-13!129;UBERON:0003076!3.23e-10!15;UBERON:0003057!3.23e-10!15;UBERON:0002308!1.53e-08!9;UBERON:0000125!1.53e-08!9;UBERON:0000200!1.03e-07!6;UBERON:0002298!2.80e-07!8;UBERON:0002021!3.80e-07!5;UBERON:0004733!4.21e-07!12;UBERON:0002028!4.21e-07!12;UBERON:0007277!4.21e-07!12 | |ontology_enrichment_uberon=UBERON:0001017!2.32e-32!82;UBERON:0000073!2.45e-31!94;UBERON:0001016!2.45e-31!94;UBERON:0005743!6.27e-31!86;UBERON:0001049!9.19e-31!57;UBERON:0005068!9.19e-31!57;UBERON:0006241!9.19e-31!57;UBERON:0007135!9.19e-31!57;UBERON:0002616!1.94e-25!59;UBERON:0000955!2.55e-24!69;UBERON:0006238!2.55e-24!69;UBERON:0002780!1.72e-22!41;UBERON:0001890!1.72e-22!41;UBERON:0006240!1.72e-22!41;UBERON:0002020!8.70e-22!34;UBERON:0003528!8.70e-22!34;UBERON:0003080!1.11e-21!42;UBERON:0001893!1.65e-21!34;UBERON:0002346!6.31e-21!90;UBERON:0002791!1.29e-20!33;UBERON:0003075!1.30e-20!86;UBERON:0007284!1.30e-20!86;UBERON:0001869!1.78e-19!32;UBERON:0002619!8.57e-18!22;UBERON:0007023!9.47e-18!115;UBERON:0000924!2.35e-16!173;UBERON:0006601!2.35e-16!173;UBERON:0004121!6.71e-16!169;UBERON:0001950!1.17e-15!20;UBERON:0000956!6.99e-15!25;UBERON:0000203!6.99e-15!25;UBERON:0003056!4.35e-14!61;UBERON:0000033!2.05e-13!123;UBERON:0000153!9.16e-13!129;UBERON:0007811!9.16e-13!129;UBERON:0003076!3.23e-10!15;UBERON:0003057!3.23e-10!15;UBERON:0002308!1.53e-08!9;UBERON:0000125!1.53e-08!9;UBERON:0000200!1.03e-07!6;UBERON:0002298!2.80e-07!8;UBERON:0002021!3.80e-07!5;UBERON:0004733!4.21e-07!12;UBERON:0002028!4.21e-07!12;UBERON:0007277!4.21e-07!12 | ||
|ontology_enrichment_uberon_v019=UBERON:0002298;1.74e-23;6!UBERON:0003528;2.04e-22;34!UBERON:0002020;2.04e-22;34!UBERON:0004733;2.68e-22;12!UBERON:0002028;2.68e-22;12!UBERON:0000073;2.15e-21;53!UBERON:0002616;2.15e-21;53!UBERON:0002791;2.28e-21;32!UBERON:0004732;1.61e-20;13!UBERON:0001016;4.58e-20;83!UBERON:0001017;6.73e-20;75!UBERON:0002619;2.51e-19;22!UBERON:0002021;4.71e-19;5!UBERON:0001869;3.06e-18;32!UBERON:0000988;1.22e-17;3!UBERON:0002240;1.22e-17;3!UBERON:0005174;1.22e-17;3!UBERON:0001137;1.22e-17;3!UBERON:0001893;2.93e-17;34!UBERON:0001950;6.07e-17;20!UBERON:0000956;6.40e-17;25!UBERON:0000203;6.40e-17;25!UBERON:0002780;3.44e-16;41!UBERON:0001890;3.44e-16;41!UBERON:0000125;8.15e-16;9!UBERON:0002308;8.15e-16;9!UBERON:0002680;1.30e-15;9!UBERON:0001895;1.30e-15;9!UBERON:0000955;8.70e-15;68!UBERON:0002148;2.41e-12;2!UBERON:0001875;2.41e-12;2!UBERON:0006331;2.41e-12;2!UBERON:0009662;2.41e-12;2!UBERON:0006514;2.41e-12;2!UBERON:0001896;1.61e-08;3!UBERON:0005290;1.61e-08;3!UBERON:0009663;5.29e-08;7!UBERON:0011216;9.13e-08;132!UBERON:0002079;2.16e-07;1!UBERON:0002038;2.16e-07;1!UBERON:0009661;2.16e-07;1!UBERON:0002950;2.16e-07;1!UBERON:0001891;2.16e-07;1!UBERON:0007023;3.71e-07;114!UBERON:0003112;5.28e-07;1!UBERON:0011158;5.28e-07;1!UBERON:0003128;5.28e-07;1!UBERON:0001703;5.28e-07;1!UBERON:0002241;5.28e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.25e-48,56;UBERON:0005068,1.25e-48,56;UBERON:0006241,1.25e-48,56;UBERON:0007135,1.25e-48,56;UBERON:0001017,3.07e-45,81;UBERON:0001016,2.75e-40,89;UBERON:0000073,2.39e-38,53;UBERON:0002616,2.39e-38,53;UBERON:0003076,8.87e-36,15;UBERON:0003057,8.87e-36,15;UBERON:0000955,3.66e-35,68;UBERON:0006238,3.66e-35,68;UBERON:0003075,6.93e-32,82;UBERON:0007284,6.93e-32,82;UBERON:0002346,3.38e-30,86;UBERON:0003528,6.52e-30,34;UBERON:0002020,6.52e-30,34;UBERON:0010371,3.44e-24,104;UBERON:0002791,2.13e-23,32;UBERON:0002298,4.20e-23,6;UBERON:0010314,5.56e-22,132;UBERON:0004733,6.03e-22,12;UBERON:0002028,6.03e-22,12;UBERON:0007277,6.03e-22,12;UBERON:0001893,6.34e-22,34;UBERON:0007023,1.15e-21,114;UBERON:0002780,5.88e-21,41;UBERON:0001890,5.88e-21,41;UBERON:0003080,5.88e-21,41;UBERON:0006240,5.88e-21,41;UBERON:0004732,3.38e-20,13;UBERON:0001869,1.57e-19,32;UBERON:0002619,1.61e-19,22;UBERON:0002021,4.03e-19,5;UBERON:0004121,9.89e-19,171;UBERON:0000924,9.89e-19,171;UBERON:0006601,9.89e-19,171;UBERON:0002240,4.49e-18,3;UBERON:0005174,4.49e-18,3;UBERON:0001137,4.49e-18,3;UBERON:0000988,1.60e-17,3;UBERON:0000956,4.33e-17,25;UBERON:0000203,4.33e-17,25;UBERON:0001950,4.53e-17,20;UBERON:0011216,9.18e-16,223;UBERON:0000125,9.75e-16,9;UBERON:0002308,9.75e-16,9;UBERON:0002680,1.82e-15,9;UBERON:0001895,1.82e-15,9;UBERON:0010092,1.82e-15,9;UBERON:0003056,2.43e-13,61;UBERON:0002148,2.88e-12,2;UBERON:0001875,2.88e-12,2;UBERON:0006331,2.88e-12,2;UBERON:0009662,2.88e-12,2;UBERON:0006514,2.88e-12,2;UBERON:0000025,3.25e-12,192;UBERON:0004111,8.64e-09,240;UBERON:0001896,2.75e-08,3;UBERON:0005290,2.75e-08,3;UBERON:0010096,2.75e-08,3;UBERON:0009663,5.64e-08,7;UBERON:0002038,2.10e-07,1;UBERON:0009661,2.10e-07,1;UBERON:0002950,2.10e-07,1;UBERON:0001891,2.10e-07,1;UBERON:0009616,2.10e-07,1;UBERON:0010286,2.10e-07,1;UBERON:0002079,2.37e-07,1;UBERON:0003112,3.40e-07,1;UBERON:0011158,3.40e-07,1;UBERON:0003128,3.40e-07,1;UBERON:0001703,3.40e-07,1;UBERON:0002241,3.40e-07,1;UBERON:0004761,3.40e-07,1;UBERON:0009617,3.40e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0,0,0,0,0,0.142169232487422,0,0,0.200544447470142,0.651032612147555,0,0,0,0,0.377875943688809,0,0,1.23350366406548,0.309706370895104,0.28769239232215,0.768482119587302,0,0.689491361473237,0,0,0,0.272906150057846,0,0.306083892370903,0.641858054152187,0.639337125799041,0.329851300186716,0.199463657621632,0,0,0,0,0,1.0429658368404,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0.267540828089713,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0.443458794925128,0.087834785693126,0.130979075497713,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0.17859945656816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0.245668634623536,0,0,0,0,0,0.336672227908132,0,0,0,0,0,0,0,0.213557388818567,0,0.300091096084402,0,0.257640540045629,0.37223371266318,0.168776332241266,0.0974370051611986,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.116193942869518,0.518305275076852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0.144781306667579,0.205476322550383,0.179060963239896,0,0,0.215627574859517,0.128343036279748,0.508189248444927,1.30139853857622,0.773288812777695,0.502548796003046,1.91381625495949,2.24702107184155,0,0.414415513436035,0,0,0,0,0.178428988797162,0,0,0,0,0,0.664225598535437,0,0.0868836144680828,0,0,0,0,0.213455115606889,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.27470839445503,0,0,0,0,0.096670718292122,0,0.15350367472613,0,0,0.145016693914229,0.170453254832202,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0.179872457583315,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0.355709216742071,0.159426272728822,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0.111443384277478,0,0,0,0,0,0.281338832821026,0,0,0,0,0,0,0.102268682502155,0,0.311039587661807,0,0,0,0.0986434056369336,0,0,0.969332746095218,1.39152147242777,1.99613798001194,0,0,0,0.1137934482855,0.254253650292766,0,0,0,0.173624994933292,0,0.361789315876224,1.52581736317083,1.10579259931225,0.295547618953547,0,0,0,0,0,0,0,0.108647371922008,0.31900115973192,0,0,0,0,0,0,0,0,0.189753732724185,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0.539209063845416,0.802577647298789,0.234264445725339,0.364909578431332,0,0,0,0,3.36680037793539,0.126373159256976,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0,0.343972064943233,0.0967563312890851,0,0,0,0,0.677942222341597,0,0.19871461170299,0.316553979779393,0,0,0,0.19980960958213,0.144090417154106,0,0.171594997861965,0,0,0,0,0,0,0,1.20084057741958,1.50595916781192,0,0,0,0.279282401272254,0.458320848023367,0,0,0,0,0.201550417460179,0,0,0,0,0,0,0,1.59045937961861,0.953423842781029,0.321506296930038,0.137539436597234,0,0.2249738915515,0.77380195455795,0.182248669974074,0,0,0.0524545881349981,0,0,0,2.1440859791201,0.662091970365432,0,0,0,0,0,0,0.170388021785422,0,0,0,1.68067843270016,1.05786081394152,0,0,0,0.314408610199332,0,0,0.197611631897944,0,0,0,0,0,0,0,1.77213635993397,7.19954962921583,0.500763722825999,1.14681839138014,1.22021956690538,0.0620964029413835,0,0,0.151649117541648,0,0,0,0.144921028610825,0.149254802886874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406870733204662,0,0.107410557042488,0,0,0.800055529326307,0,0.336749488765919,0,0,0,0.260994291965212,0,0,0,0.358177682162975,0,0,0.176689145945881,0,0,0,0,0,0.829550616910385,0,0.132864840313363,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0.157265941855896,0.109209638192014,0,0.212574920101683,0.247871528518004,0,0,0,0,0,0,0.321146125482298,1.41696576325585,1.43670473151436,2.87162909937057,3.52900374710405,0.345786262321089,1.61475645631851,0,0.196295437002051,0,0,0.115525666150338,0,0,0,0,0.20170506870352,0,0,0,0,0.472763092328763,0,0.826747186004736,0.253663240775627,3.82882366312754,0,0,0,0,0.535701835878287,0,0,0,0,0,0,1.35939465953663,0.328863867814245,0,0,0,0.628462359664008,0,0,0.215927591218621,0,0.0714765441766563,0,0,0,0,0,0,0,0,0.354996002191696,0.0852134047591577,0.423387050190929,0,0,0,0,0,0,0,0.205325613712494,1.1598144313382,0,0,0.198950775161368,0.356760272332706,0,0.549702583727146,0,0,0,0,0.245148321753905,0,1.57046773691956,1.48523200163543,1.6906229103336,0,0,0,0,0,0,0,0,0,2.86679166302903,0,0.407948941145488,4.79985759374415,0.5290268405154,0,0,0,0.252332849670158,0,0,0,0,0,0.250707539292375,1.28823786971007,0.535928260312357,0.829169439458779,1.13776295448085,0,0.476128862927481,0,0,0,0,0.202117188958219,0.217716747896961,0.684466602170562,0,0,0.332660356546013,0,0.106727345877715,0,0,0,0.122241444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|short_description=p29@RTN4 | |short_description=p29@RTN4 | ||
}} | }} |
Latest revision as of 16:44, 17 September 2015
Short description: | p29@RTN4 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_29_at_RTN4_5end |
Coexpression cluster: | C552_medial_temporal_occipital_parietal_duodenum_brain_spinal |
Association with transcript: | -139bp_to_AB073351_5end |
EntrezGene: | RTN4 |
HGNC: | 14085 |
UniProt: | Q3LIF4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data