FFCP PHASE1:Hg19::chr9:130912519..130912545,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr9:130912519..130912545,+ | |||
|coexpression_cluster_id=C484 | |||
|description=CAGE_peak_at_chr9:130912519..130912545,+ | |description=CAGE_peak_at_chr9:130912519..130912545,+ | ||
|id=chr9:130912519..130912545,+ | |id=chr9:130912519..130912545,+ | ||
|ontology_enrichment_celltype=CL:0002076!3.30e-20!43;CL:0000223!5.26e-15!59;CL:0000066!4.32e-12!254;CL:0002251!5.73e-09!21;CL:0002368!1.75e-07!13 | |ontology_enrichment_celltype=CL:0002076!3.30e-20!43;CL:0000223!5.26e-15!59;CL:0000066!4.32e-12!254;CL:0002251!5.73e-09!21;CL:0002368!1.75e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0002076;2.92e-13;42!CL:1000415;5.18e-10;2!CL:0000764;1.36e-09;2!CL:0000558;1.36e-09;2!CL:0002368;2.52e-08;13!CL:0002149;1.91e-07;6!CL:0002255;1.91e-07;6!CL:0002178;2.59e-07;3!CL:0002231;4.43e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,3.09e-18,42;CL:0000223,3.11e-14,58;CL:1000415,3.86e-10,2;CL:0000066,1.97e-09,253;CL:0000764,2.75e-09,2;CL:0000765,2.75e-09,2;CL:0000050,2.75e-09,2;CL:0000038,2.75e-09,2;CL:0000558,2.75e-09,2;CL:0000547,2.75e-09,2;CL:0000549,2.75e-09,2;CL:0000550,2.75e-09,2;CL:0000552,2.75e-09,2;CL:0002368,1.80e-08,13;CL:0002149,2.44e-07,6;CL:0002255,2.44e-07,6;CL:0002178,2.56e-07,3;CL:0002231,3.48e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000223;6.07e-08;58 | |||
|ontology_enrichment_disease=DOID:299!2.19e-09!25;DOID:305!9.84e-09!106;DOID:1749!1.34e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:299;2.39e-16;25!DOID:4929;1.36e-09;2!DOID:3001;1.91e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:299,2.97e-16,25;DOID:305,1.42e-12,106;DOID:4929,2.21e-09,2;DOID:0050687,3.68e-08,143;DOID:3001,2.44e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.80e-16!169;UBERON:0000925!2.80e-16!169;UBERON:0006595!2.80e-16!169;UBERON:0001007!4.56e-13!155;UBERON:0001555!4.56e-13!155;UBERON:0007026!4.56e-13!155;UBERON:0000077!7.05e-13!130;UBERON:0004921!3.32e-11!129;UBERON:0004185!3.32e-11!129;UBERON:0001004!4.28e-11!72;UBERON:0000161!4.58e-11!35;UBERON:0001041!8.69e-10!98;UBERON:0000166!3.63e-09!21;UBERON:0002294!5.32e-09!7;UBERON:0001173!5.32e-09!7;UBERON:0004912!5.32e-09!7;UBERON:0000065!5.58e-08!53;UBERON:0005911!1.57e-07!82;UBERON:0000178!1.92e-07!15;UBERON:0000179!1.92e-07!15;UBERON:0000463!1.92e-07!15;UBERON:0000165!3.39e-07!28;UBERON:0000930!3.39e-07!28;UBERON:0001044!4.16e-07!6;UBERON:0003293!4.16e-07!6;UBERON:0003294!4.16e-07!6;UBERON:0010047!4.16e-07!6;UBERON:0000167!4.16e-07!6;UBERON:0003408!5.17e-07!10;UBERON:0000464!5.31e-07!104 | |||
|ontology_enrichment_uberon_v019=UBERON:0002294;1.39e-10;7!UBERON:0001173;1.39e-10;7!UBERON:0001829;7.27e-10;2!UBERON:0001723;5.81e-07;3!UBERON:0001033;5.81e-07;3!UBERON:0002110;6.08e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001829,6.36e-10,2;UBERON:0002294,2.81e-08,9;UBERON:0001173,2.81e-08,9;UBERON:0004912,2.81e-08,9;UBERON:0004119,1.20e-07,160;UBERON:0000925,1.20e-07,160;UBERON:0006595,1.20e-07,160;UBERON:0002110,5.00e-07,3;UBERON:0006242,5.00e-07,3;UBERON:0001723,5.64e-07,3;UBERON:0001033,5.64e-07,3;UBERON:0010056,5.64e-07,3;UBERON:0000161,7.28e-07,36 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15148819429164,0,0,0.30120591877825,1.84877005083394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.580418477257168,0,0,0.251248665256743,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0.0654895377488563,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.488124115096339,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219500570817251,1.1240175325762,0.100528972411631,0.185176890317059,0,0,0,0,0,0.144366447761074,0,0.380508304469197,0,0,0,0,0,0,0.16798212819886,0.425325291727159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,1.80455823272956,31.3075362382048,0,0,0,0.902399225814824,0.924184045252977,0,0,0,0,0,0,0,0,0,0,3.3243040357149,0,1.09629938322967,1.0457418040996,0,0,0,0.206082023295445,0,0,0,2.60024098414608,0,0,0,0,0,0,0,0,0,1.81813406897076,1.72971060628596,0.255225424989168,3.0347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,2.17781969722645,0.0941438007767792,0,0,0.443430153536676,0.229723400206959,0,2.29391162142713,1.13929437434833,0.476463550915578,0.822724546172388,0.648473311192717,0.540031437238115,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66614393599564,1.4098700508785,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,0.828851746593443,0,0,0,0,0.359473404589307,12.8895245766439,0,0,0,0,0,0,0,0,0,0,1.2517279311405,0,0,0,0,0,0,0,0,0,0,0,0,0.278847488557207,0.923403102045565,0,0,0,0,0,0.183195186803725,0,0,0,0.166211681900156,0,0,0,0,0.158936578980379,0,14.6909527343233,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,1.19472429772959,2.27687636823834,0,1.04135843001079,0.293977192243133,0.609414446062818,0.34945333648406,0,0,0,0,0.872901148395775,0,4.06765333404958,0,0,0,1.75996244461323,4.56905275433742,0.640358984218058,8.99143243119586,0.288180834308212,0,0,2.16082196982225,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196854963029498,0,0,0,0,0,0,0,0,0,0.335434687599266,0.0788057072991982,0,0,0,0.575745591958336,0.714695326373367,0.662091970365432,0,0,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,0.106787412567695,0.157204305099666,0.414239055347196,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470531639396343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0,0,2.53574548030352,0,0,0,0,0,0.699397538597222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65085738669511,0.693153996902029,0,0,0,0,0,0,0,0.327543835020193,1.18284868973636,0,0,0,0,0,1.64477330057155,0,0,20.9530381328936,0,0,0,0,0.0887023701626388,0,0,0,0,0,0.333694205676207,0.156986185701028,0,0,0,0,0,0,0,0,0,0,0.414432328326074,0.3414369541879,0,0.860454717640555,0,0,0,32.9913890703432,0,0,1.78968690876468,7.95016892283468,0.731507549893617,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128915775947154,0,37.1392192299768,12.3513205100492,0.401206833445841,0,2.2936464170227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.83821167421766,0.23806443146374,0.193766729508018,0.0620747142958579,0,0,0,5.22520194952707,1.36893320434112,0.26940821205835,8.39149803094313,0,10.8266347252596,0,0,1.07790242527904,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15148819429164,0,0,0.30120591877825,1.84877005083394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.580418477257168,0,0,0.251248665256743,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0.0654895377488563,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.488124115096339,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219500570817251,1.1240175325762,0.100528972411631,0.185176890317059,0,0,0,0,0,0.144366447761074,0,0.380508304469197,0,0,0,0,0,0,0.16798212819886,0.425325291727159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,1.80455823272956,31.3075362382048,0,0,0,0.902399225814824,0.924184045252977,0,0,0,0,0,0,0,0,0,0,3.3243040357149,0,1.09629938322967,1.0457418040996,0,0,0,0.206082023295445,0,0,0,2.60024098414608,0,0,0,0,0,0,0,0,0,1.81813406897076,1.72971060628596,0.255225424989168,3.0347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,2.17781969722645,0.0941438007767792,0,0,0.443430153536676,0.229723400206959,0,2.29391162142713,1.13929437434833,0.476463550915578,0.822724546172388,0.648473311192717,0.540031437238115,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66614393599564,1.4098700508785,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,0.828851746593443,0,0,0,0,0.359473404589307,12.8895245766439,0,0,0,0,0,0,0,0,0,0,1.2517279311405,0,0,0,0,0,0,0,0,0,0,0,0,0.278847488557207,0.923403102045565,0,0,0,0,0,0.183195186803725,0,0,0,0.166211681900156,0,0,0,0,0.158936578980379,0,14.6909527343233,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,1.19472429772959,2.27687636823834,0,1.04135843001079,0.293977192243133,0.609414446062818,0.34945333648406,0,0,0,0,0.872901148395775,0,4.06765333404958,0,0,0,1.75996244461323,4.56905275433742,0.640358984218058,8.99143243119586,0.288180834308212,0,0,2.16082196982225,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196854963029498,0,0,0,0,0,0,0,0,0,0.335434687599266,0.0788057072991982,0,0,0,0.575745591958336,0.714695326373367,0.662091970365432,0,0,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,0.106787412567695,0.157204305099666,0.414239055347196,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470531639396343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0,0,2.53574548030352,0,0,0,0,0,0.699397538597222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65085738669511,0.693153996902029,0,0,0,0,0,0,0,0.327543835020193,1.18284868973636,0,0,0,0,0,1.64477330057155,0,0,20.9530381328936,0,0,0,0,0.0887023701626388,0,0,0,0,0,0.333694205676207,0.156986185701028,0,0,0,0,0,0,0,0,0,0,0.414432328326074,0.3414369541879,0,0.860454717640555,0,0,0,32.9913890703432,0,0,1.78968690876468,7.95016892283468,0.731507549893617,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128915775947154,0,37.1392192299768,12.3513205100492,0.401206833445841,0,2.2936464170227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.83821167421766,0.23806443146374,0.193766729508018,0.0620747142958579,0,0,0,5.22520194952707,1.36893320434112,0.26940821205835,8.39149803094313,0,10.8266347252596,0,0,1.07790242527904,0,0,0,0,0,0 | ||
|short_description=p@chr9:130912519..130912545,+ | |short_description=p@chr9:130912519..130912545,+ | ||
}} | }} |
Latest revision as of 23:07, 31 July 2015
Short description: | p@chr9:130912519..130912545, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr9:130912519..130912545, + |
Coexpression cluster: | C484_squamous_pharyngeal_bile_transitionalcell_Prostate_signet_trachea |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 3.09e-18 | 42 |
endodermal cell | 3.11e-14 | 58 |
epithelial cell of gall bladder | 3.86e-10 | 2 |
epithelial cell | 1.97e-09 | 253 |
erythroid lineage cell | 2.75e-09 | 2 |
erythroblast | 2.75e-09 | 2 |
megakaryocyte-erythroid progenitor cell | 2.75e-09 | 2 |
erythroid progenitor cell | 2.75e-09 | 2 |
reticulocyte | 2.75e-09 | 2 |
proerythroblast | 2.75e-09 | 2 |
basophilic erythroblast | 2.75e-09 | 2 |
polychromatophilic erythroblast | 2.75e-09 | 2 |
orthochromatic erythroblast | 2.75e-09 | 2 |
respiratory epithelial cell | 1.80e-08 | 13 |
epithelial cell of uterus | 2.44e-07 | 6 |
stromal cell of endometrium | 2.44e-07 | 6 |
epithelial cell of stomach | 2.56e-07 | 3 |
epithelial cell of prostate | 3.48e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
major salivary gland | 6.36e-10 | 2 |
biliary system | 2.81e-08 | 9 |
biliary tree | 2.81e-08 | 9 |
biliary bud | 2.81e-08 | 9 |
endoderm-derived structure | 1.20e-07 | 160 |
endoderm | 1.20e-07 | 160 |
presumptive endoderm | 1.20e-07 | 160 |
gallbladder | 5.00e-07 | 3 |
gall bladder primordium | 5.00e-07 | 3 |
tongue | 5.64e-07 | 3 |
gustatory system | 5.64e-07 | 3 |
future tongue | 5.64e-07 | 3 |
orifice | 7.28e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 2.97e-16 | 25 |
carcinoma | 1.42e-12 | 106 |
tubular adenocarcinoma | 2.21e-09 | 2 |
cell type cancer | 3.68e-08 | 143 |
female reproductive endometrioid cancer | 2.44e-07 | 6 |